mRNA_13508 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|338454
Unique NamemRNA_13508
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|338454 vs. uniprot
Match: A0A836C722_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C722_9STRA)

HSP 1 Score: 971 bits (2511), Expect = 0.000e+0
Identity = 594/594 (100.00%), Postives = 594/594 (100.00%), Query Frame = 1 
Query:    1 MEFAGQQHGSFHQLGAQVAGSNSNTSRSHTPHGDGDYSLLDEDRFSLFSSFFSPYSAAAPAAALASPWAREFLNIGNCGSTCSEGAYTSPPASSRSSSVGDLNDAATNMAEMMHKLDLCATAHRSPLNYGPCQHSDVPGGSASFFSEGAYATQPSSAQQRTSYAPVTRHHPQPQHLHSVGPQHAGSFRAATAADPHYNPHVTQPTRHLQQQQQQAYFRDGGDYLSPGKPDGHGGRYRPEAAAAAAADARTAELAAELRHRDYLAHAPITGHHHLSGAGVAXXXXXXXXLHARXXXXXXXXAADASDARRACEGAVVREAALILRDAGARSLRAVELANALRARLGTDALARARELHGGLLSLLERHPRVFRVDRIPKSDCVTLVAMPAPEDYGLFSAAXXXXXXXXXXPRRVEHMAGLRAEAXXXXXQVHARRRSFAEPLQEPQQPMQXXXXXXXXXQYLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALVTLTSDRFVPTQSWPVSPREDWPYVACVTDVLRAAGGSTTISKLRGLLRARLSSAATIKSVPLKAMLVAYAPPFALCGNRVALLPPSAAALRGSGGALR 1782
            MEFAGQQHGSFHQLGAQVAGSNSNTSRSHTPHGDGDYSLLDEDRFSLFSSFFSPYSAAAPAAALASPWAREFLNIGNCGSTCSEGAYTSPPASSRSSSVGDLNDAATNMAEMMHKLDLCATAHRSPLNYGPCQHSDVPGGSASFFSEGAYATQPSSAQQRTSYAPVTRHHPQPQHLHSVGPQHAGSFRAATAADPHYNPHVTQPTRHLQQQQQQAYFRDGGDYLSPGKPDGHGGRYRPEAAAAAAADARTAELAAELRHRDYLAHAPITGHHHLSGAGVAXXXXXXXXLHARXXXXXXXXAADASDARRACEGAVVREAALILRDAGARSLRAVELANALRARLGTDALARARELHGGLLSLLERHPRVFRVDRIPKSDCVTLVAMPAPEDYGLFSAAXXXXXXXXXXPRRVEHMAGLRAEAXXXXXQVHARRRSFAEPLQEPQQPMQXXXXXXXXXQYLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALVTLTSDRFVPTQSWPVSPREDWPYVACVTDVLRAAGGSTTISKLRGLLRARLSSAATIKSVPLKAMLVAYAPPFALCGNRVALLPPSAAALRGSGGALR
Sbjct:    1 MEFAGQQHGSFHQLGAQVAGSNSNTSRSHTPHGDGDYSLLDEDRFSLFSSFFSPYSAAAPAAALASPWAREFLNIGNCGSTCSEGAYTSPPASSRSSSVGDLNDAATNMAEMMHKLDLCATAHRSPLNYGPCQHSDVPGGSASFFSEGAYATQPSSAQQRTSYAPVTRHHPQPQHLHSVGPQHAGSFRAATAADPHYNPHVTQPTRHLQQQQQQAYFRDGGDYLSPGKPDGHGGRYRPEAAAAAAADARTAELAAELRHRDYLAHAPITGHHHLSGAGVAXXXXXXXXLHARXXXXXXXXAADASDARRACEGAVVREAALILRDAGARSLRAVELANALRARLGTDALARARELHGGLLSLLERHPRVFRVDRIPKSDCVTLVAMPAPEDYGLFSAAXXXXXXXXXXPRRVEHMAGLRAEAXXXXXQVHARRRSFAEPLQEPQQPMQXXXXXXXXXQYLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALVTLTSDRFVPTQSWPVSPREDWPYVACVTDVLRAAGGSTTISKLRGLLRARLSSAATIKSVPLKAMLVAYAPPFALCGNRVALLPPSAAALRGSGGALR 594
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BLAST of jgi.p|Trimin1|338454 vs. uniprot
Match: A0A7S2D0S3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D0S3_9STRA)

HSP 1 Score: 120 bits (301), Expect = 2.670e-25
Identity = 105/268 (39.18%), Postives = 121/268 (45.15%), Query Frame = 1 
Query:  934 EGAVVREAALILRDAGARSLRAVELANALRARLGTDALARARELHGGLLSLLERHPRVFRVDRIPKSDCVTLVAMPAPEDYGLFSAAXXXXXXXXXXPRRVEHMAGLRAEAXXXXXQVHARRRSFAEPLQEPQQPMQXXXXXXXXXQYLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALVTLTSDRFVPTQSWPVSPREDWPYVACVTDVLRAAGGSTTISKLRGLLRARLSSAATIKSVPLKAMLVAYAPPFALCGNRVALL 1737
            E AVV     IL  A  ++LRAVELAN LR R G   L R RELHGGLL+LLE++P  F V RIPKSDCV LV     E   L+  A        XX              XXX    H    S       P              Q  R                                 L  LTS+ FVPTQ W   PR D PYV  VTD LRA GGS T SKLR L++ +L+ A T+KSV L+  L AY   F++ G RVAL+
Sbjct:  241 EAAVVALTREILTKAANKNLRAVELANTLRGRHGPQILTRVRELHGGLLTLLEKYPSDFEVQRIPKSDCVRLVTK---EPVHLYPCADEEGRTTQXXXXXXXXXXXXXXXXXXXRPPTHGPP-SLNTSTTRPHASSLADEPLATLGQLSRLSLETTDVRGTLDGPHTESSGCPI---------LELLTSETFVPTQKWCRDPRYDGPYVKLVTDQLRAQGGSVTFSKLRSLMKKQLNEARTVKSVSLRCFLEAYNDCFSMSGRRVALI 495
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BLAST of jgi.p|Trimin1|338454 vs. uniprot
Match: A0A4D9CUF1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUF1_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 4.600e-15
Identity = 49/84 (58.33%), Postives = 60/84 (71.43%), Query Frame = 1 
Query: 1483 LVTLTSDRFVPTQSWPVSPREDWPYVACVTDVLRAAGGSTTISKLRGLLRARLSSAATIKSVPLKAMLVAYAPPFALCGNRVAL 1734
            L  LT++ FVPTQ+WP+ P  D  YV  V + LRA GG+TT+SKLRGLL+ +L S  TIKSVPLKA L AY+  FAL  N V+L
Sbjct: 1635 LQILTNNHFVPTQAWPLEPLRDAGYVTVVAEELRAVGGTTTVSKLRGLLKHKLGSKETIKSVPLKAFLQAYSSVFALHRNHVSL 1718
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BLAST of jgi.p|Trimin1|338454 vs. uniprot
Match: A0A7S3HPA9_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HPA9_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 2.070e-14
Identity = 51/80 (63.75%), Postives = 60/80 (75.00%), Query Frame = 1 
Query:  934 EGAVVREAALILRDAGARSLRAVELANALRARLGTDALARARELHGGLLSLLERHPRVFRVDRIPKSDCVTLVAMPAPED 1173
            EGAV+R    IL  A  RSL+AVELAN LRAR+GT++LAR RE  GGLLSLLE+H   FRVDRIPK+D VTL++    ED
Sbjct:  579 EGAVLRSCREILAGAADRSLKAVELANTLRARVGTESLARVREQWGGLLSLLEKHGAHFRVDRIPKNDKVTLISNDGDED 658
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BLAST of jgi.p|Trimin1|338454 vs. uniprot
Match: W7TU76_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TU76_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.990e-14
Identity = 48/70 (68.57%), Postives = 55/70 (78.57%), Query Frame = 1 
Query:  943 VVREAALILRDAGARSLRAVELANALRARLGTDALARARELHGGLLSLLERHPRVFRVDRIPKSDCVTLV 1152
            VVR    ILR+A   +L+AVELAN LRARLGT  LA+ RE +GGLL LLERHP  FRVDRIPK+DCVTL+
Sbjct:  591 VVRATGEILRNAANYALKAVELANTLRARLGTKVLAKVRERYGGLLFLLERHPSFFRVDRIPKNDCVTLL 660
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BLAST of jgi.p|Trimin1|338454 vs. uniprot
Match: A0A7S4DGC6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DGC6_HETAK)

HSP 1 Score: 76.3 bits (186), Expect = 2.190e-12
Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = 1 
Query: 1492 LTSDRFVPTQSWPVSPREDWPYVACVTDVLRAA-GGSTTISKLRGLLRARLSSAATIKSVPLKAMLVAYAPPFALCGNRV 1728
            LTS++ VPT++W  +   D PYV  V ++L  A G S T+SKLRGLLRARL S  T+KSVPLKA+L AY   FA+  +RV
Sbjct:   78 LTSEKRVPTKAWVANFERDLPYVRAVQELLLGARGASLTVSKLRGLLRARLRSPQTVKSVPLKALLAAYPNLFAVRSHRV 157
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BLAST of jgi.p|Trimin1|338454 vs. uniprot
Match: A0A7S4EE30_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EE30_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 4.280e-12
Identity = 86/278 (30.94%), Postives = 112/278 (40.29%), Query Frame = 1 
Query:  901 AADASDARRACEGAVVREAALILRDAGARSLRAVELANALRARLGTDALARARELHGGLLSLLERHPRVFRVDRIPKSDCVTLVAMPAPEDYGLFSAAXXXXXXXXXXPRRVEHMAGLRAEAXXXXXQVHARRRSFAEPLQEPQQPMQXXXXXXXXXQYLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALVTLTSDRFVPTQSWPVSPREDWPYVACVTDVLRAAGGS-TTISKLRGLLRARLSSAATIKSVPLKAMLVAYAPPFALCGNRVA 1731
            AA    A R  E AVVRE   IL  A   +L AV+L+NALRARLG  AL+R R  HGGLL+ LE+     RV R+PK D VTL    AP +                 P+ VE    +  +      Q     R      Q+P              Q L                                  L  L ++ + PT  WP     D   V  V + LRA     +T+ K+R  LR   +  +++KSVPL+A+L AY   F + G  VA
Sbjct:  218 AAPVERATREDEAAVVREVVNILASASENALTAVDLSNALRARLGVGALSRVRASHGGLLTFLEKSAGRVRVVRVPKHDVVTL----APVESTPVMPGALRAEAAVFSPQFVEPAVPVVDDGKPAPKQCIGPAR------QKPMGASSLFPAPPLFPQQLSQGCQRQ---------------------------LARLAAEDYAPTMPWPRDAVHDQGIVRTVLECLRAQSPRPSTLHKIRAYLRRVYALQSSVKSVPLRALLTAYPQLFVIDGTSVA 458
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BLAST of jgi.p|Trimin1|338454 vs. uniprot
Match: A0A7R9Y9G7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y9G7_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 6.040e-11
Identity = 50/101 (49.50%), Postives = 61/101 (60.40%), Query Frame = 1 
Query:  901 AADASDARRACEGAVVREAALILRDAGARSLRAVELANALRARLGTDALARARELHGGLLSLLERHPRVFRVDRIPKSDCVTLV----AMPAPEDYGLFSA 1191
            AA   D R + +  V   A  IL+ A    L+AVELAN +R+RLGTD L+  R+  GGLLSLLE  P +F V RIPKSD VTL     A PAP+  G  S+
Sbjct:   54 AAPQVDERCSLQEQVTMTAENILQSAAGCQLKAVELANTIRSRLGTDTLSAIRKQFGGLLSLLESQPDIFIVRRIPKSDIVTLRNPLRAKPAPQQQGQASS 154
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BLAST of jgi.p|Trimin1|338454 vs. uniprot
Match: A0A812VV75_SYMMI (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VV75_SYMMI)

HSP 1 Score: 67.0 bits (162), Expect = 2.160e-8
Identity = 38/74 (51.35%), Postives = 50/74 (67.57%), Query Frame = 1 
Query:  934 EGAVVREAALILRDAGARSLRAVELANALRARLGTDALARARELHGGLLSLLERHPRVFRVDRIPKSDCVTLVA 1155
            E A+ R A  IL +   + L++VELANALR R+G DAL R + L+GGLL LLE +   F V RIPK+D V L++
Sbjct:   34 EEAIYRNAQAILSETANKCLKSVELANALRDRIGKDALQRTKNLYGGLLVLLELYKETFVVHRIPKNDMVELIS 107
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BLAST of jgi.p|Trimin1|338454 vs. uniprot
Match: A0A7S3JMV8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JMV8_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 4.120e-8
Identity = 39/75 (52.00%), Postives = 48/75 (64.00%), Query Frame = 1 
Query:  943 VVREAALILRDAGARSLRAVELANALRARLGTDALARARELHGGLLSLLERHPRVFRVDRIPKSDCVTLVAMPAP 1167
            V+R    IL  A   +L+AV+LANALR R+G  AL R R+  GGLLSLLE+H  + RV R+PK D V LV    P
Sbjct:  185 VIRHTREILEAASEHALKAVDLANALRNRVGVAALGRIRQTQGGLLSLLEQHKDIVRVQRVPKHDVVYLVTKKPP 259
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|338454 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A836C722_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2D0S3_9STRA2.670e-2539.18Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A4D9CUF1_9STRA4.600e-1558.33Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S3HPA9_9STRA2.070e-1463.75Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
W7TU76_9STRA2.990e-1468.57Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S4DGC6_HETAK2.190e-1255.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4EE30_9STRA4.280e-1230.94Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7R9Y9G7_9STRA6.040e-1149.50Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A812VV75_SYMMI2.160e-851.35Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A7S3JMV8_9STRA4.120e-852.00Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_91contigContig_91:386172..387956 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|338454|MIX47217_16_47
Hectar predicted targeting categoryother localisation
TranscriptId338776
TrackFilteredModels1
ProteinId338454
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|338454gene_13508Tribonema minus UTEX_B_3156 geneContig_91 386172..387956 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13508_1exon_13508_1Tribonema minus UTEX_B_3156 exonContig_91 386172..387956 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13508CDS_13508Tribonema minus UTEX_B_3156 CDSContig_91 386172..387956 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|338454Trimin1|338454|MIX47217_16_47Tribonema minus UTEX_B_3156 polypeptideContig_91 386172..387956 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13508 ID=mRNA_13508|Name=jgi.p|Trimin1|338454|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1785bp|location=Sequence derived from alignment at Contig_91:386172..387956- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTTCGCGGGCCAGCAGCATGGGTCCTTCCATCAGCTTGGAGCCCA
AGTCGCTGGCAGCAACAGCAACACCTCCCGCTCACACACACCCCATGGCG
ACGGGGACTACAGCTTGCTAGATGAGGACCGTTTCTCATTGTTCTCCAGC
TTCTTCAGCCCCTACTCTGCAGCAGCTCCTGCTGCGGCTTTGGCTTCCCC
CTGGGCTCGCGAGTTCCTCAACATCGGTAACTGCGGGAGCACGTGCAGCG
AGGGCGCTTATACCAGTCCCCCGGCCAGCAGCCGCTCCAGCTCAGTGGGA
GATCTCAATGACGCGGCCACCAACATGGCGGAGATGATGCACAAGCTTGA
CCTGTGTGCCACCGCGCATCGCAGCCCTCTCAACTACGGCCCTTGCCAGC
ACTCCGATGTCCCAGGCGGCAGTGCCTCATTTTTTTCCGAAGGCGCTTAT
GCTACTCAGCCGTCCTCCGCGCAGCAGCGCACGTCCTACGCTCCAGTGAC
TCGACACCACCCCCAGCCGCAACATCTTCACTCGGTCGGCCCGCAGCACG
CAGGCAGCTTCCGCGCCGCGACTGCCGCCGATCCTCATTACAACCCCCAC
GTCACCCAGCCCACGCGCCACCTCCAGCAGCAGCAGCAGCAGGCCTATTT
CAGAGACGGCGGCGACTACCTCTCTCCCGGGAAGCCGGATGGACACGGGG
GCAGGTACCGTCCCGAAGCAGCGGCGGCGGCGGCGGCGGATGCGCGCACG
GCGGAGCTGGCGGCGGAGCTGCGCCACCGCGACTACCTTGCGCACGCGCC
CATCACTGGCCACCATCACCTCAGCGGCGCCGGCGTTGCTGCAGCAGCGC
AGCAGCAGCAGCCGCTGCACGCGCGCGCCGCCGCCGCCGCTGCTGCCGTC
GCGGCGGACGCCTCCGACGCGCGGCGCGCCTGCGAGGGCGCCGTCGTCCG
CGAGGCAGCGCTCATCCTGCGCGACGCGGGCGCGCGCTCGCTGCGCGCCG
TTGAGCTCGCCAACGCGCTGCGCGCGCGCCTCGGCACGGACGCCCTCGCG
CGCGCGCGCGAGCTGCACGGCGGCCTCCTGTCCCTGCTGGAGCGTCACCC
GCGCGTCTTCCGCGTGGACCGCATCCCCAAGAGCGACTGCGTGACGCTCG
TCGCGATGCCGGCCCCCGAGGACTACGGCCTGTTCTCTGCTGCCGCCGCG
GCGGCGGCGGCGGCAGCAGCGGCGCCGCGCCGCGTGGAGCACATGGCGGG
CCTGCGTGCGGAGGCTGCGGCGGCAGCGGCGCAGGTGCACGCGCGCAGGC
GCTCATTTGCCGAGCCGCTGCAAGAGCCGCAGCAGCCCATGCAGCAGGCG
CCGCCGCAGGAGCATCCCGCGCAGTACCTGCGGCAGCAGCAGCAGCAGCA
GCAGCAGCTGGCGGCGCCTGCCGGCGGCAGCAGCAGCGGCGGCAGCAGCA
GCAGCGCCCTGCCGCCGCCGCCGAGCTCTGCGCTCGTGACGCTGACCAGC
GACCGCTTCGTGCCGACGCAGTCGTGGCCCGTGTCGCCGCGCGAGGACTG
GCCGTACGTCGCGTGCGTCACCGACGTGCTGCGCGCCGCGGGCGGCTCCA
CGACCATCTCCAAGCTGCGCGGCCTGCTGCGCGCGCGCCTCAGCAGCGCC
GCCACCATCAAGAGCGTCCCCCTCAAGGCCATGCTCGTGGCATACGCGCC
GCCGTTTGCGCTGTGCGGCAACCGCGTCGCGCTGCTGCCGCCCTCTGCCG
CTGCTCTGCGCGGCAGCGGCGGCGCCCTGCGGTGA
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protein sequence of jgi.p|Trimin1|338454

>Trimin1|338454|MIX47217_16_47 ID=Trimin1|338454|MIX47217_16_47|Name=jgi.p|Trimin1|338454|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=595bp
MEFAGQQHGSFHQLGAQVAGSNSNTSRSHTPHGDGDYSLLDEDRFSLFSS
FFSPYSAAAPAAALASPWAREFLNIGNCGSTCSEGAYTSPPASSRSSSVG
DLNDAATNMAEMMHKLDLCATAHRSPLNYGPCQHSDVPGGSASFFSEGAY
ATQPSSAQQRTSYAPVTRHHPQPQHLHSVGPQHAGSFRAATAADPHYNPH
VTQPTRHLQQQQQQAYFRDGGDYLSPGKPDGHGGRYRPEAAAAAAADART
AELAAELRHRDYLAHAPITGHHHLSGAGVAAAAQQQQPLHARAAAAAAAV
AADASDARRACEGAVVREAALILRDAGARSLRAVELANALRARLGTDALA
RARELHGGLLSLLERHPRVFRVDRIPKSDCVTLVAMPAPEDYGLFSAAAA
AAAAAAAAPRRVEHMAGLRAEAAAAAAQVHARRRSFAEPLQEPQQPMQQA
PPQEHPAQYLRQQQQQQQQLAAPAGGSSSGGSSSSALPPPPSSALVTLTS
DRFVPTQSWPVSPREDWPYVACVTDVLRAAGGSTTISKLRGLLRARLSSA
ATIKSVPLKAMLVAYAPPFALCGNRVALLPPSAAALRGSGGALR*
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mRNA from alignment at Contig_91:386172..387956-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13508 ID=mRNA_13508|Name=jgi.p|Trimin1|338454|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1785bp|location=Sequence derived from alignment at Contig_91:386172..387956- (Tribonema minus UTEX_B_3156 )
ATGGAGTTCGCGGGCCAGCAGCATGGGTCCTTCCATCAGCTTGGAGCCCA
AGTCGCTGGCAGCAACAGCAACACCTCCCGCTCACACACACCCCATGGCG
ACGGGGACTACAGCTTGCTAGATGAGGACCGTTTCTCATTGTTCTCCAGC
TTCTTCAGCCCCTACTCTGCAGCAGCTCCTGCTGCGGCTTTGGCTTCCCC
CTGGGCTCGCGAGTTCCTCAACATCGGTAACTGCGGGAGCACGTGCAGCG
AGGGCGCTTATACCAGTCCCCCGGCCAGCAGCCGCTCCAGCTCAGTGGGA
GATCTCAATGACGCGGCCACCAACATGGCGGAGATGATGCACAAGCTTGA
CCTGTGTGCCACCGCGCATCGCAGCCCTCTCAACTACGGCCCTTGCCAGC
ACTCCGATGTCCCAGGCGGCAGTGCCTCATTTTTTTCCGAAGGCGCTTAT
GCTACTCAGCCGTCCTCCGCGCAGCAGCGCACGTCCTACGCTCCAGTGAC
TCGACACCACCCCCAGCCGCAACATCTTCACTCGGTCGGCCCGCAGCACG
CAGGCAGCTTCCGCGCCGCGACTGCCGCCGATCCTCATTACAACCCCCAC
GTCACCCAGCCCACGCGCCACCTCCAGCAGCAGCAGCAGCAGGCCTATTT
CAGAGACGGCGGCGACTACCTCTCTCCCGGGAAGCCGGATGGACACGGGG
GCAGGTACCGTCCCGAAGCAGCGGCGGCGGCGGCGGCGGATGCGCGCACG
GCGGAGCTGGCGGCGGAGCTGCGCCACCGCGACTACCTTGCGCACGCGCC
CATCACTGGCCACCATCACCTCAGCGGCGCCGGCGTTGCTGCAGCAGCGC
AGCAGCAGCAGCCGCTGCACGCGCGCGCCGCCGCCGCCGCTGCTGCCGTC
GCGGCGGACGCCTCCGACGCGCGGCGCGCCTGCGAGGGCGCCGTCGTCCG
CGAGGCAGCGCTCATCCTGCGCGACGCGGGCGCGCGCTCGCTGCGCGCCG
TTGAGCTCGCCAACGCGCTGCGCGCGCGCCTCGGCACGGACGCCCTCGCG
CGCGCGCGCGAGCTGCACGGCGGCCTCCTGTCCCTGCTGGAGCGTCACCC
GCGCGTCTTCCGCGTGGACCGCATCCCCAAGAGCGACTGCGTGACGCTCG
TCGCGATGCCGGCCCCCGAGGACTACGGCCTGTTCTCTGCTGCCGCCGCG
GCGGCGGCGGCGGCAGCAGCGGCGCCGCGCCGCGTGGAGCACATGGCGGG
CCTGCGTGCGGAGGCTGCGGCGGCAGCGGCGCAGGTGCACGCGCGCAGGC
GCTCATTTGCCGAGCCGCTGCAAGAGCCGCAGCAGCCCATGCAGCAGGCG
CCGCCGCAGGAGCATCCCGCGCAGTACCTGCGGCAGCAGCAGCAGCAGCA
GCAGCAGCTGGCGGCGCCTGCCGGCGGCAGCAGCAGCGGCGGCAGCAGCA
GCAGCGCCCTGCCGCCGCCGCCGAGCTCTGCGCTCGTGACGCTGACCAGC
GACCGCTTCGTGCCGACGCAGTCGTGGCCCGTGTCGCCGCGCGAGGACTG
GCCGTACGTCGCGTGCGTCACCGACGTGCTGCGCGCCGCGGGCGGCTCCA
CGACCATCTCCAAGCTGCGCGGCCTGCTGCGCGCGCGCCTCAGCAGCGCC
GCCACCATCAAGAGCGTCCCCCTCAAGGCCATGCTCGTGGCATACGCGCC
GCCGTTTGCGCTGTGCGGCAACCGCGTCGCGCTGCTGCCGCCCTCTGCCG
CTGCTCTGCGCGGCAGCGGCGGCGCCCTGCGGTGA
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Coding sequence (CDS) from alignment at Contig_91:386172..387956-

>mRNA_13508 ID=mRNA_13508|Name=jgi.p|Trimin1|338454|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1785bp|location=Sequence derived from alignment at Contig_91:386172..387956- (Tribonema minus UTEX_B_3156 )
ATGGAGTTCGCGGGCCAGCAGCATGGGTCCTTCCATCAGCTTGGAGCCCA
AGTCGCTGGCAGCAACAGCAACACCTCCCGCTCACACACACCCCATGGCG
ACGGGGACTACAGCTTGCTAGATGAGGACCGTTTCTCATTGTTCTCCAGC
TTCTTCAGCCCCTACTCTGCAGCAGCTCCTGCTGCGGCTTTGGCTTCCCC
CTGGGCTCGCGAGTTCCTCAACATCGGTAACTGCGGGAGCACGTGCAGCG
AGGGCGCTTATACCAGTCCCCCGGCCAGCAGCCGCTCCAGCTCAGTGGGA
GATCTCAATGACGCGGCCACCAACATGGCGGAGATGATGCACAAGCTTGA
CCTGTGTGCCACCGCGCATCGCAGCCCTCTCAACTACGGCCCTTGCCAGC
ACTCCGATGTCCCAGGCGGCAGTGCCTCATTTTTTTCCGAAGGCGCTTAT
GCTACTCAGCCGTCCTCCGCGCAGCAGCGCACGTCCTACGCTCCAGTGAC
TCGACACCACCCCCAGCCGCAACATCTTCACTCGGTCGGCCCGCAGCACG
CAGGCAGCTTCCGCGCCGCGACTGCCGCCGATCCTCATTACAACCCCCAC
GTCACCCAGCCCACGCGCCACCTCCAGCAGCAGCAGCAGCAGGCCTATTT
CAGAGACGGCGGCGACTACCTCTCTCCCGGGAAGCCGGATGGACACGGGG
GCAGGTACCGTCCCGAAGCAGCGGCGGCGGCGGCGGCGGATGCGCGCACG
GCGGAGCTGGCGGCGGAGCTGCGCCACCGCGACTACCTTGCGCACGCGCC
CATCACTGGCCACCATCACCTCAGCGGCGCCGGCGTTGCTGCAGCAGCGC
AGCAGCAGCAGCCGCTGCACGCGCGCGCCGCCGCCGCCGCTGCTGCCGTC
GCGGCGGACGCCTCCGACGCGCGGCGCGCCTGCGAGGGCGCCGTCGTCCG
CGAGGCAGCGCTCATCCTGCGCGACGCGGGCGCGCGCTCGCTGCGCGCCG
TTGAGCTCGCCAACGCGCTGCGCGCGCGCCTCGGCACGGACGCCCTCGCG
CGCGCGCGCGAGCTGCACGGCGGCCTCCTGTCCCTGCTGGAGCGTCACCC
GCGCGTCTTCCGCGTGGACCGCATCCCCAAGAGCGACTGCGTGACGCTCG
TCGCGATGCCGGCCCCCGAGGACTACGGCCTGTTCTCTGCTGCCGCCGCG
GCGGCGGCGGCGGCAGCAGCGGCGCCGCGCCGCGTGGAGCACATGGCGGG
CCTGCGTGCGGAGGCTGCGGCGGCAGCGGCGCAGGTGCACGCGCGCAGGC
GCTCATTTGCCGAGCCGCTGCAAGAGCCGCAGCAGCCCATGCAGCAGGCG
CCGCCGCAGGAGCATCCCGCGCAGTACCTGCGGCAGCAGCAGCAGCAGCA
GCAGCAGCTGGCGGCGCCTGCCGGCGGCAGCAGCAGCGGCGGCAGCAGCA
GCAGCGCCCTGCCGCCGCCGCCGAGCTCTGCGCTCGTGACGCTGACCAGC
GACCGCTTCGTGCCGACGCAGTCGTGGCCCGTGTCGCCGCGCGAGGACTG
GCCGTACGTCGCGTGCGTCACCGACGTGCTGCGCGCCGCGGGCGGCTCCA
CGACCATCTCCAAGCTGCGCGGCCTGCTGCGCGCGCGCCTCAGCAGCGCC
GCCACCATCAAGAGCGTCCCCCTCAAGGCCATGCTCGTGGCATACGCGCC
GCCGTTTGCGCTGTGCGGCAACCGCGTCGCGCTGCTGCCGCCCTCTGCCG
CTGCTCTGCGCGGCAGCGGCGGCGCCCTGCGGTGA
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