mRNA_13498 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|172331 vs. uniprot
Match: A0A835YHV5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHV5_9STRA) HSP 1 Score: 378 bits (970), Expect = 1.920e-131 Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 1 Query: 1 MNSTTAFQTWRGDHEDVLEQPQHYHAAXXXXXXXXXXXXXXXXXXXXXXXXSTASAEPSIASPLTCIAVGDSLLFDISAGCYPVYQKDSLLNTDADFDYGAFRDVAARAAALSPDGSAQYTAFAFTFTTTGVHAFASSCGDGAVTVVTVMPADMACTTAAAFVPLTTAALVGLGVAKQDGGLTLTPDWPLIGGLLGGLAAAALAVVAALYYFRSRAWTTGIEAF 672 MNSTTAFQTWRGDHEDVLEQPQHYHAAXXXXXXXXXXXXXXXXXXXXXXXXSTASAEPSIASPLTCIAVGDSLLFDISAGCYPVYQKDSLLNTDADFDYGAFRDVAARAAALSPDGSAQYTAFAFTFTTTGVHAFASSCGDGAVTVVTVMPADMACTTAAAFVPLTTAALVGLGVAKQDGGLTLTPDWPLIGGLLGGLAAAALAVVAALYYFRSRAWTTGIEAF Sbjct: 1 MNSTTAFQTWRGDHEDVLEQPQHYHAAXXXXXXXXXXXXXXXXXXXXXXXXSTASAEPSIASPLTCIAVGDSLLFDISAGCYPVYQKDSLLNTDADFDYGAFRDVAARAAALSPDGSAQYTAFAFTFTTTGVHAFASSCGDGAVTVVTVMPADMACTTAAAFVPLTTAALVGLGVAKQDGGLTLTPDWPLIGGLLGGLAAAALAVVAALYYFRSRAWTTGIEAF 224
BLAST of jgi.p|Trimin1|172331 vs. uniprot
Match: D8LR26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR26_ECTSI) HSP 1 Score: 176 bits (447), Expect = 3.830e-47 Identity = 95/168 (56.55%), Postives = 118/168 (70.24%), Query Frame = 1 Query: 166 AEPSIASPLTCIAVGDSLLFDISAGCYPVYQKDSLLNTDADFDYGAFRDVAARAAALSPDGSAQYTAFAFTFTTTGVHAFASSCGDGAVTVVTVMPADMACTTAAAFVPLTTAALVGLGVAKQDGGLTLTPDWPLIGGLLGGLAAAALAVVAALYYFRSRAWTTGIEA 669 AEP++ SPL+C+ GDS+LFDIS+GCYPVY KDSLLN++ +FDYG FR VA A + SA Y F F F G + F+SSC G+V V+ VM D++CTT A FVPLT A L+ LGVAK +TLTPDW LI GLL G+A VV+A+YYFR++AWTTG A Sbjct: 3815 AEPAVESPLSCVRKGDSVLFDISSGCYPVYDKDSLLNSNLEFDYGEFRTVAELATS-----SATYDTFGFVFEDAGTYVFSSSCNPGSVIVLAVMGEDVSCTTEAHFVPLTAANLIKLGVAKNSDNITLTPDWALICGLLAGVAFMIFGVVSAVYYFRTKAWTTGQAA 3977
BLAST of jgi.p|Trimin1|172331 vs. uniprot
Match: A0A6H5KWQ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ4_9PHAE) HSP 1 Score: 173 bits (439), Expect = 4.400e-46 Identity = 96/168 (57.14%), Postives = 117/168 (69.64%), Query Frame = 1 Query: 166 AEPSIASPLTCIAVGDSLLFDISAGCYPVYQKDSLLNTDADFDYGAFRDVAARAAALSPDGSAQYTAFAFTFTTTGVHAFASSCGDGAVTVVTVMPADMACTTAAAFVPLTTAALVGLGVAKQDGGLTLTPDWPLIGGLLGGLAAAALAVVAALYYFRSRAWTTGIEA 669 AEP++ SPL+CI GDS+LFDIS+GCYPVY KDSLLN++ +FDYG FR VA A + SA Y F F F G + F+SSC +V V+ VM D++CTT A FVPLT A L+ LGVAK LTLTPDW LI GLL G+A VV+A+YYFR++AWTTG A Sbjct: 258 AEPAVESPLSCIRKGDSVLFDISSGCYPVYDKDSLLNSNLEFDYGEFRTVAELATS-----SATYDTFGFVFEDAGTYVFSSSCNLDSVIVLAVMGEDVSCTTDAHFVPLTAANLIKLGVAKNSDNLTLTPDWALICGLLAGVAFMIFGVVSAVYYFRTKAWTTGQAA 420
BLAST of jgi.p|Trimin1|172331 vs. uniprot
Match: G4YVE1_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YVE1_PHYSP) HSP 1 Score: 145 bits (365), Expect = 3.730e-36 Identity = 81/168 (48.21%), Postives = 110/168 (65.48%), Query Frame = 1 Query: 154 STASAEPSIASPLTCIAVGDSLLFDIS-AGCYPVYQKDSLLNTDADFDYGAFRDVAARAAALSPDGSAQYTAFAFTFTTTGVHAFASSCGDGAVTVVTVMPADMACTTAAAFVPLTTAALVGLGVAKQDGGLTLTPDWPLIGGLLGGLAAAALAVVAALYYFRSRAWT 654 +TAS SIA+P+ C++VG+ LLFD+S AG YP+Y KDS+LNT+ FDYGAFR +A + A ++ +AFAF+FT G + F +S A T+V VM A +C T AA VPL L+ + ++ L L PDW LI GLLGGL +AV+A LYYFR+++WT Sbjct: 2597 TTASTPSSIANPMVCLSVGNGLLFDLSVAGAYPIYMKDSMLNTNPSFDYGAFRALATKVNA----NASTVSAFAFSFTEAGTYVFGNSLNAAAQTIVVVMKAGTSCPTEAAIVPLNEKNLITVSAKRRTDDLILAPDWALIVGLLGGLFGVVIAVIAGLYYFRAKSWT 2760
BLAST of jgi.p|Trimin1|172331 vs. uniprot
Match: W2R4U9_PHYPN (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2R4U9_PHYPN) HSP 1 Score: 141 bits (355), Expect = 8.180e-35 Identity = 79/168 (47.02%), Postives = 107/168 (63.69%), Query Frame = 1 Query: 154 STASAEPSIASPLTCIAVGDSLLFDISA-GCYPVYQKDSLLNTDADFDYGAFRDVAARAAALSPDGSAQYTAFAFTFTTTGVHAFASSCGDGAVTVVTVMPADMACTTAAAFVPLTTAALVGLGVAKQDGGLTLTPDWPLIGGLLGGLAAAALAVVAALYYFRSRAWT 654 ST+S SIA+P+ C++VGD LLFD+S G YP+Y KDS+LNT+ FDYGAFR +A + A S+ +AFAF+FT G + F +S A T+V VM A +C T A VPL L+ + ++ + L PDW LI GLLGGL +AV+ LYYFR+++WT Sbjct: 3612 STSSTSLSIANPMVCLSVGDGLLFDLSVPGSYPIYLKDSMLNTNPSFDYGAFRSLATKVNA----NSSTVSAFAFSFTEPGTYVFGNSLNSAAQTIVVVMKAGTSCPTEAPIVPLNEKNLITVSAKRRTDDIILAPDWGLIIGLLGGLFGVVIAVIGGLYYFRAKSWT 3775
BLAST of jgi.p|Trimin1|172331 vs. uniprot
Match: A0A6G0S9T2_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0S9T2_9STRA) HSP 1 Score: 138 bits (347), Expect = 9.570e-34 Identity = 77/161 (47.83%), Postives = 106/161 (65.84%), Query Frame = 1 Query: 175 SIASPLTCIAVGDSLLFDISA-GCYPVYQKDSLLNTDADFDYGAFRDVAARAAALSPDGSAQYTAFAFTFTTTGVHAFASSCGDGAVTVVTVMPADMACTTAAAFVPLTTAALVGLGVAKQDGGLTLTPDWPLIGGLLGGLAAAALAVVAALYYFRSRAWT 654 SIA+P+ C++ GD LLFD+S G YP+Y+KDS+LNT+ FDYGAFR +A + A ++ +AFAF+FT G + F +S GA T+V VM + +C T A VPL L+ + ++ L L+PDW LI GLLGGL LAV+A LYYFR+++WT Sbjct: 2239 SIANPMVCLSRGDGLLFDLSVPGSYPIYKKDSMLNTNPSFDYGAFRALATKVNA----NASTVSAFAFSFTDPGTYVFGNSLNAGAQTIVVVMKSGTSCPTEAPIVPLNEKNLITVSAKRRTDDLILSPDWALIVGLLGGLFGVVLAVIAGLYYFRAKSWT 2395
BLAST of jgi.p|Trimin1|172331 vs. uniprot
Match: A0A6G0M0R9_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0M0R9_9STRA) HSP 1 Score: 138 bits (347), Expect = 9.620e-34 Identity = 77/161 (47.83%), Postives = 106/161 (65.84%), Query Frame = 1 Query: 175 SIASPLTCIAVGDSLLFDISA-GCYPVYQKDSLLNTDADFDYGAFRDVAARAAALSPDGSAQYTAFAFTFTTTGVHAFASSCGDGAVTVVTVMPADMACTTAAAFVPLTTAALVGLGVAKQDGGLTLTPDWPLIGGLLGGLAAAALAVVAALYYFRSRAWT 654 SIA+P+ C++ GD LLFD+S G YP+Y+KDS+LNT+ FDYGAFR +A + A ++ +AFAF+FT G + F +S GA T+V VM + +C T A VPL L+ + ++ L L+PDW LI GLLGGL LAV+A LYYFR+++WT Sbjct: 3649 SIANPMVCLSRGDGLLFDLSVPGSYPIYKKDSMLNTNPSFDYGAFRALATKVNA----NASTVSAFAFSFTDPGTYVFGNSLNAGAQTIVVVMKSGTSCPTEAPIVPLNEKNLITVSAKRRTDDLILSPDWALIVGLLGGLFGVVLAVIAGLYYFRAKSWT 3805
BLAST of jgi.p|Trimin1|172331 vs. uniprot
Match: D0MZ33_PHYIT (Ephrin_rec_like domain-containing protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MZ33_PHYIT) HSP 1 Score: 136 bits (343), Expect = 3.280e-33 Identity = 78/168 (46.43%), Postives = 106/168 (63.10%), Query Frame = 1 Query: 154 STASAEPSIASPLTCIAVGDSLLFDISAG-CYPVYQKDSLLNTDADFDYGAFRDVAARAAALSPDGSAQYTAFAFTFTTTGVHAFASSCGDGAVTVVTVMPADMACTTAAAFVPLTTAALVGLGVAKQDGGLTLTPDWPLIGGLLGGLAAAALAVVAALYYFRSRAWT 654 +TAS SIA+P+ C++VG+ LLFD+S YPVY KDS+LNT+ FDYGAFR +AA+ A S+ +AFAF+FT G + F +S A T+V VM +C T A VPL L+ + ++ + L PDW LI GLLGGL +AV+ LYYFR+++WT Sbjct: 2461 TTASTSLSIANPMVCLSVGNGLLFDLSVPRSYPVYLKDSMLNTNPSFDYGAFRSLAAKVNA----NSSTVSAFAFSFTEPGTYVFGNSLNSAAQTIVVVMKTGTSCPTEAPIVPLNEKNLITVSAKRRTDDIILAPDWGLIIGLLGGLFGVVIAVIGGLYYFRAKSWT 2624
BLAST of jgi.p|Trimin1|172331 vs. uniprot
Match: A0A329SQQ8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SQQ8_9STRA) HSP 1 Score: 135 bits (339), Expect = 1.130e-32 Identity = 76/168 (45.24%), Postives = 104/168 (61.90%), Query Frame = 1 Query: 154 STASAEPSIASPLTCIAVGDSLLFDISAG-CYPVYQKDSLLNTDADFDYGAFRDVAARAAALSPDGSAQYTAFAFTFTTTGVHAFASSCGDGAVTVVTVMPADMACTTAAAFVPLTTAALVGLGVAKQDGGLTLTPDWPLIGGLLGGLAAAALAVVAALYYFRSRAWT 654 +TAS SIA+P+ C++VG LLFD+S YP+Y KDS+LNT+ FDYGAFR +A + A ++ +AFAF+FT G + F +S A T+V VM +C T A VPL LV + ++ + L PDW LI GLLGGL +AV+ LYYFR+++WT Sbjct: 2728 TTASTSSSIANPMVCLSVGGGLLFDLSVPRSYPIYMKDSMLNTNPSFDYGAFRSLATKVNA----NTSTVSAFAFSFTEPGTYVFGNSLNSAAQTIVVVMKTGTSCPTEAPIVPLNEKNLVTVSAKRRTDDIILAPDWGLIMGLLGGLFGVVIAVIGGLYYFRAKSWT 2891
BLAST of jgi.p|Trimin1|172331 vs. uniprot
Match: H3HB02_PHYRM (TNFR-Cys domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HB02_PHYRM) HSP 1 Score: 134 bits (338), Expect = 1.520e-32 Identity = 78/168 (46.43%), Postives = 104/168 (61.90%), Query Frame = 1 Query: 154 STASAEPSIASPLTCIAVGDSLLFDISAG-CYPVYQKDSLLNTDADFDYGAFRDVAARAAALSPDGSAQYTAFAFTFTTTGVHAFASSCGDGAVTVVTVMPADMACTTAAAFVPLTTAALVGLGVAKQDGGLTLTPDWPLIGGLLGGLAAAALAVVAALYYFRSRAWT 654 +T SA SIA+P+ C+ VG LLFD+S YP+Y KDS+LNT+ FDYGAFR +A +A ++ +AFAF+FT G + F +S A T+V VM A +C T AA VPL L+ + ++ L PDW LI GLLGGL +AV+A LYYFR ++WT Sbjct: 1453 TTDSASSSIANPMVCLPVGSGLLFDLSVPRSYPIYLKDSMLNTNPSFDYGAFRALATKA----NTNASTVSAFAFSFTEPGTYVFGNSLNAAAQTIVVVMKAGTSCPTEAAIVPLNEKNLITVSAKRRTDDFILAPDWSLIVGLLGGLFGVVVAVIAGLYYFRVKSWT 1616 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|172331 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13498 ID=mRNA_13498|Name=jgi.p|Trimin1|172331|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=675bp|location=Sequence derived from alignment at Contig_91:257693..258367- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGAACAGCACCACCGCCTTTCAGACATGGCGTGGCGATCACGAAGACGTback to top protein sequence of jgi.p|Trimin1|172331 >Trimin1|172331|e_gw1.91.4.1 ID=Trimin1|172331|e_gw1.91.4.1|Name=jgi.p|Trimin1|172331|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=225bp MNSTTAFQTWRGDHEDVLEQPQHYHAAGAAQPPPQQQQQPQQQQRQQQRRback to top mRNA from alignment at Contig_91:257693..258367- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_13498 ID=mRNA_13498|Name=jgi.p|Trimin1|172331|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=675bp|location=Sequence derived from alignment at Contig_91:257693..258367- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_91:257693..258367- >mRNA_13498 ID=mRNA_13498|Name=jgi.p|Trimin1|172331|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=675bp|location=Sequence derived from alignment at Contig_91:257693..258367- (Tribonema minus UTEX_B_3156 )back to top |