mRNA_13497 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|145767
Unique NamemRNA_13497
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|145767 vs. uniprot
Match: A0A835YHE9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHE9_9STRA)

HSP 1 Score: 262 bits (669), Expect = 1.290e-88
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 1 
Query:    1 PPQGAVLELMPRAALPPQALSRLDFGEHLLAVLGLGASRMRVEVARSLPPPPPDSGNAFRNSYLWDADARALYVHARRLGGSGDFGLVLVHAAAHLLSDAAPAHLHDDARPEFTRAFHGALATLARELFKR 393
            PPQGAVLELMPRAALPPQALSRLDFGEHLLAVLGLGASRMRVEVARSLPPPPPDSGNAFRNSYLWDADARALYVHARRLGGSGDFGLVLVHAAAHLLSDAAPAHLHDDARPEFTRAFHGALATLARELFKR
Sbjct:    1 PPQGAVLELMPRAALPPQALSRLDFGEHLLAVLGLGASRMRVEVARSLPPPPPDSGNAFRNSYLWDADARALYVHARRLGGSGDFGLVLVHAAAHLLSDAAPAHLHDDARPEFTRAFHGALATLARELFKR 131
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BLAST of jgi.p|Trimin1|145767 vs. uniprot
Match: D8LR26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR26_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 1.140e-32
Identity = 74/139 (53.24%), Postives = 96/139 (69.06%), Query Frame = 1 
Query:    4 PQGAVLELMPRAALPPQALSRLDFGEHLLAVLGLGASRMRVEVARSLPP---PPPDSG-------NAFRNSYLWDADARALYVHARRLGGSGDFGLVLVHAAAHLLSDAAPAHLHDDARPEFTRAFHGALATLARELFK 390
            P+G  L+++PR  LP QA++RL+FGEHLL+VLGL A  +R++VA++LPP   P   SG       NAFRNSYLW+A    L +H RRL  SGDFGLVLVHAAAH+  D  P+ + +D  P FT+ FH +L  L +ELFK
Sbjct: 6496 PEGNDLQVIPRDKLPVQAVARLEFGEHLLSVLGL-ADTVRLQVAKNLPPTDVPSQGSGTGGRLNANAFRNSYLWEASTGVLNLHVRRLSSSGDFGLVLVHAAAHIHVD--PSDMTNDLDPRFTQHFHRSLKVLTQELFK 6631
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BLAST of jgi.p|Trimin1|145767 vs. uniprot
Match: A0A6H5KWQ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ4_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.830e-31
Identity = 71/139 (51.08%), Postives = 94/139 (67.63%), Query Frame = 1 
Query:    4 PQGAVLELMPRAALPPQALSRLDFGEHLLAVLGLGASRMRVEVARSLPPPPPDS----------GNAFRNSYLWDADARALYVHARRLGGSGDFGLVLVHAAAHLLSDAAPAHLHDDARPEFTRAFHGALATLARELFK 390
            P+G  L+++PR  LP QAL+RL+FGEHLL+VLGL A  ++++VA++LPP    S           NAFRNSYLW+A    L +H RRL  SGDFGLVLVHAAAH+  D  P+ + +D  P FT+ FH +L  L +ELF+
Sbjct: 2811 PEGNDLQVIPRDKLPVQALARLEFGEHLLSVLGL-ADTVKLQVAKNLPPTDVLSQGSGTGGRLNANAFRNSYLWEASTGVLNLHVRRLSSSGDFGLVLVHAAAHIHVD--PSDMSNDLDPRFTQHFHRSLKVLTQELFR 2946
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BLAST of jgi.p|Trimin1|145767 vs. uniprot
Match: A0A286XRX3_CAVPO (Uncharacterized protein n=1 Tax=Cavia porcellus TaxID=10141 RepID=A0A286XRX3_CAVPO)

HSP 1 Score: 56.6 bits (135), Expect = 1.090e-6
Identity = 35/102 (34.31%), Postives = 53/102 (51.96%), Query Frame = 1 
Query:   82 HLLAVLGLGASRMRVEVARSLPPPPPDSGNAFRNSYLWDADARALYVHARRLGGSGDFGLVLVHAAAHLLSDAAPAHLHDDARPEFTRAFHGALATLARELF 387
            HLL +  L    + +++A  LP     SGNAFR+S+L+ +    L++    L   G F L+L+H  AH+    A   LH D+ P F R+F+  L    R+ F
Sbjct: 1407 HLL-ITQLHVPEITLQIASHLPAAEA-SGNAFRDSFLYQSAENTLFIDRECLTSVGSFVLLLIHCLAHI----AAGDLHHDSNPTFLRSFYEGLKAYFRDTF 1502
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BLAST of jgi.p|Trimin1|145767 vs. uniprot
Match: UPI0014191132 (uncharacterized protein LOC117060321 n=1 Tax=Lacerta agilis TaxID=80427 RepID=UPI0014191132)

HSP 1 Score: 52.4 bits (124), Expect = 2.890e-5
Identity = 33/95 (34.74%), Postives = 49/95 (51.58%), Query Frame = 1 
Query:  103 LGASRMRVEVARSLPPPPPDSGNAFRNSYLWDADARALYVHARRLGGSGDFGLVLVHAAAHLLSDAAPAHLHDDARPEFTRAFHGALATLARELF 387
            +GA  + + +A S+P      GNAFRNS+ + A    L++    L   G F L+LVH  AH+ ++     L  D+ P F R F+ AL     E+F
Sbjct:  198 IGAPEIDLCIASSIPSSN-TLGNAFRNSFHYQASGNKLFILRECLSCVGSFILLLVHCLAHIAAE----DLSQDSSPAFRRLFYQALKACLGEMF 287
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|145767 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835YHE9_9STRA1.290e-88100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D8LR26_ECTSI1.140e-3253.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWQ4_9PHAE1.830e-3151.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A286XRX3_CAVPO1.090e-634.31Uncharacterized protein n=1 Tax=Cavia porcellus Ta... [more]
UPI00141911322.890e-534.74uncharacterized protein LOC117060321 n=1 Tax=Lacer... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_91contigContig_91:237644..238036 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|145767|gw1.91.73.1
BRITEko00000,ko00001,ko03036,ko04812
KEGG Pathwayko04260,ko04261,ko05416,map04260,map04261,map05416
KEGG koko:K16726,ko:K17751
Descriptionactin binding
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5022@1|root,KOG1217@1|root,KOG3529@1|root,KOG0161@2759|Eukaryota,KOG1217@2759|Eukaryota,KOG3529@2759|Eukaryota
Evalue1.87e-33
Seed ortholog2880.D8LR26
Hectar predicted targeting categoryother localisation
TranscriptId146089
TrackFilteredModels1
ProteinId145767
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|145767gene_13497Tribonema minus UTEX_B_3156 geneContig_91 237644..238036 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13497_1exon_13497_1Tribonema minus UTEX_B_3156 exonContig_91 237644..238036 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13497CDS_13497Tribonema minus UTEX_B_3156 CDSContig_91 237644..238036 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|145767Trimin1|145767|gw1.91.73.1Tribonema minus UTEX_B_3156 polypeptideContig_91 237644..238036 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13497 ID=mRNA_13497|Name=jgi.p|Trimin1|145767|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=393bp|location=Sequence derived from alignment at Contig_91:237644..238036- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCGCCGCAGGGCGCGGTGCTGGAGCTCATGCCGCGCGCCGCGCTGCCGCC
GCAGGCGCTGTCGCGGCTCGACTTCGGCGAGCACCTGCTGGCGGTGCTGG
GCCTCGGCGCCTCGCGCATGCGCGTGGAGGTCGCGCGCTCGCTGCCGCCG
CCGCCGCCGGACTCCGGCAACGCGTTCCGCAACTCGTACCTGTGGGACGC
GGACGCGCGCGCGCTGTACGTGCACGCGCGCCGCCTCGGCGGCAGCGGCG
ACTTTGGGCTTGTCCTTGTGCACGCCGCCGCGCACCTGCTGTCGGACGCG
GCGCCGGCGCACCTGCACGACGACGCGCGCCCCGAGTTCACGCGCGCGTT
CCACGGCGCGCTGGCGACGCTCGCGCGCGAGCTGTTCAAGCGC
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protein sequence of jgi.p|Trimin1|145767

>Trimin1|145767|gw1.91.73.1 ID=Trimin1|145767|gw1.91.73.1|Name=jgi.p|Trimin1|145767|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=131bp
PPQGAVLELMPRAALPPQALSRLDFGEHLLAVLGLGASRMRVEVARSLPP
PPPDSGNAFRNSYLWDADARALYVHARRLGGSGDFGLVLVHAAAHLLSDA
APAHLHDDARPEFTRAFHGALATLARELFKR
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mRNA from alignment at Contig_91:237644..238036-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13497 ID=mRNA_13497|Name=jgi.p|Trimin1|145767|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=393bp|location=Sequence derived from alignment at Contig_91:237644..238036- (Tribonema minus UTEX_B_3156 )
CCGCCGCAGGGCGCGGTGCTGGAGCTCATGCCGCGCGCCGCGCTGCCGCC
GCAGGCGCTGTCGCGGCTCGACTTCGGCGAGCACCTGCTGGCGGTGCTGG
GCCTCGGCGCCTCGCGCATGCGCGTGGAGGTCGCGCGCTCGCTGCCGCCG
CCGCCGCCGGACTCCGGCAACGCGTTCCGCAACTCGTACCTGTGGGACGC
GGACGCGCGCGCGCTGTACGTGCACGCGCGCCGCCTCGGCGGCAGCGGCG
ACTTTGGGCTTGTCCTTGTGCACGCCGCCGCGCACCTGCTGTCGGACGCG
GCGCCGGCGCACCTGCACGACGACGCGCGCCCCGAGTTCACGCGCGCGTT
CCACGGCGCGCTGGCGACGCTCGCGCGCGAGCTGTTCAAGCGC
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Coding sequence (CDS) from alignment at Contig_91:237644..238036-

>mRNA_13497 ID=mRNA_13497|Name=jgi.p|Trimin1|145767|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=393bp|location=Sequence derived from alignment at Contig_91:237644..238036- (Tribonema minus UTEX_B_3156 )
CCGCCGCAGGGCGCGGTGCTGGAGCTCATGCCGCGCGCCGCGCTGCCGCC
GCAGGCGCTGTCGCGGCTCGACTTCGGCGAGCACCTGCTGGCGGTGCTGG
GCCTCGGCGCCTCGCGCATGCGCGTGGAGGTCGCGCGCTCGCTGCCGCCG
CCGCCGCCGGACTCCGGCAACGCGTTCCGCAACTCGTACCTGTGGGACGC
GGACGCGCGCGCGCTGTACGTGCACGCGCGCCGCCTCGGCGGCAGCGGCG
ACTTTGGGCTTGTCCTTGTGCACGCCGCCGCGCACCTGCTGTCGGACGCG
GCGCCGGCGCACCTGCACGACGACGCGCGCCCCGAGTTCACGCGCGCGTT
CCACGGCGCGCTGGCGACGCTCGCGCGCGAGCTGTTCAAGCGC
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