mRNA_13468 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|170361
Unique Name	mRNA_13468
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|170361 vs. uniprot
Match: A0A836C9I6_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9I6_9STRA)

HSP 1 Score: 475 bits (1222), Expect = 5.460e-169
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 1

Query:    1 GKVCVVTGGSSGIGLATAQLLAKQGGAVVLAARGQDRLNKAVDIIKASGGEAFGVIADASKDEDNKQLVDAVLEKYHRLDVSFINAGIYRPATLTEVTEATVDELFATNVKGVAFALKYQLPAIEKSGGHGSIVINSSVAGRVVAEMPEFGGNGPFSASKAGADMLMRHAAIEASRHGTRVNSIAPGIVHTGAANMSQEVWDVLGTTMSLMARAGRPEEIAACVCFLLSDEASFVTGTVMVADGGVSIKG 750
            GKVCVVTGGSSGIGLATAQLLAKQGGAVVLAARGQDRLNKAVDIIKASGGEAFGVIADASKDEDNKQLVDAVLEKYHRLDVSFINAGIYRPATLTEVTEATVDELFATNVKGVAFALKYQLPAIEKSGGHGSIVINSSVAGRVVAEMPEFGGNGPFSASKAGADMLMRHAAIEASRHGTRVNSIAPGIVHTGAANMSQEVWDVLGTTMSLMARAGRPEEIAACVCFLLSDEASFVTGTVMVADGGVSIKG
Sbjct:    1 GKVCVVTGGSSGIGLATAQLLAKQGGAVVLAARGQDRLNKAVDIIKASGGEAFGVIADASKDEDNKQLVDAVLEKYHRLDVSFINAGIYRPATLTEVTEATVDELFATNVKGVAFALKYQLPAIEKSGGHGSIVINSSVAGRVVAEMPEFGGNGPFSASKAGADMLMRHAAIEASRHGTRVNSIAPGIVHTGAANMSQEVWDVLGTTMSLMARAGRPEEIAACVCFLLSDEASFVTGTVMVADGGVSIKG 250

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BLAST of jgi.p|Trimin1|170361 vs. uniprot
Match: A0A836CAF4_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAF4_9STRA)

HSP 1 Score: 313 bits (803), Expect = 3.700e-105
Identity = 166/249 (66.67%), Postives = 202/249 (81.12%), Query Frame = 1

Query:    1 GKVCVVTGGSSGIGLATAQLLAKQGGAVVLAARGQDRLNKAVDIIKASGGEAFGVIADASKDEDNKQLVDAVLEKYHRLDVSFINAGIYRPATLTEVTEATVDELFATNVKGVAFALKYQLPAIEKSGGHGSIVINSSVAGRVVAEMPEFGGNGPFSASKAGADMLMRHAAIEASRHGTRVNSIAPGIVHTGAANMSQEVWDVLGTTMSLMARAGRPEEIAACVCFLLSDEASFVTGTVMVADGGVSIK 747
            G+VCVVTGGSSGIGLATA+ LA++GG VVLAARG++RL KAVD IKASGGEAFGV+ADASK++DNK+LVDAVL+KYHRLDVSFINAGI+R A   +VT+  +DEL A NVK VA  LKYQLPAI KSGG G+IVINSS+AG  V    EF GNGP++A+KA ADMLMRHAA+EAS+ GT++NSIAPG+V T   ++  + ++  G   ++M R GRPEEIA    FLLSD+ASFV GTV+ ADGG ++K
Sbjct:    6 GRVCVVTGGSSGIGLATAEQLAREGGKVVLAARGKERLEKAVDGIKASGGEAFGVVADASKEDDNKRLVDAVLDKYHRLDVSFINAGIHRAAKAVDVTDEMLDELLAANVKSVALGLKYQLPAIAKSGGGGAIVINSSIAGSNVKTRKEFVGNGPYAATKAAADMLMRHAAVEASKQGTQINSIAPGVVKTNLLDLPDDAYEEFGKGANVMHRTGRPEEIAH---FLLSDDASFVMGTVLTADGGHALK 251

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BLAST of jgi.p|Trimin1|170361 vs. uniprot
Match: A0A835YRJ1_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRJ1_9STRA)

HSP 1 Score: 311 bits (798), Expect = 2.440e-104
Identity = 165/249 (66.27%), Postives = 197/249 (79.12%), Query Frame = 1

Query:    4 KVCVVTGGSSGIGLATAQLLAKQGGAVVLAARGQDRLNKAVDIIKASGGEAFGVIADASKDEDNKQLVDAVLEKYHRLDVSFINAGIYRPATLTEVTEATVDELFATNVKGVAFALKYQLPAIEKSGGHGSIVINSSVAGRVVAEMPEFGGNGPFSASKAGADMLMRHAAIEASRHGTRVNSIAPGIVHTGAANMSQEVWDVLGTTMSLMARAGRPEEIAACVCFLLSDEASFVTGTVMVADGGVSIKG 750
            KV +VTG SSGIGLATAQ +A +G  VVLAARGQ++L+KAV  IKA+GGEA GV  DAS DEDNK+LVD  LE Y  ++VSFINAGIYR A   EVT+  +DEL+ TNVKGVA+ALKYQL AIEKSGG GS+VINSS AG  V   P F  NGP++++KA AD+LM++AAIEA  HGTRVNSIAPG+V TG  +  ++ +D +G T+ LM RAGRPEEIA CVCFL SD+ASFVTGTV+ ADGG S+KG
Sbjct:    7 KVAIVTGASSGIGLATAQQMAAEGAKVVLAARGQEKLDKAVASIKAAGGEAIGVTMDASVDEDNKRLVDKALETYGAVNVSFINAGIYRTAVAAEVTKTILDELYDTNVKGVAYALKYQLAAIEKSGGKGSVVINSSCAGGNVTAFPVFRSNGPYASTKAAADILMKYAAIEAIDHGTRVNSIAPGVVATGLGDFPEDAFDEMGKTVHLMPRAGRPEEIARCVCFLASDDASFVTGTVLYADGGFSLKG 255

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BLAST of jgi.p|Trimin1|170361 vs. uniprot
Match: A0A835YQ90_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ90_9STRA)

HSP 1 Score: 311 bits (796), Expect = 4.750e-104
Identity = 161/250 (64.40%), Postives = 196/250 (78.40%), Query Frame = 1

Query:    1 GKVCVVTGGSSGIGLATAQLLAKQGGAVVLAARGQDRLNKAVDIIKASGGEAFGVIADASKDEDNKQLVDAVLEKYHRLDVSFINAGIYRPATLTEVTEATVDELFATNVKGVAFALKYQLPAIEKSGGHGSIVINSSVAGRVVAEMPEFGGNGPFSASKAGADMLMRHAAIEASRHGTRVNSIAPGIVHTGAANMSQEVWDVLGTTMSLMARAGRPEEIAACVCFLLSDEASFVTGTVMVADGGVSIKG 750
            GKV ++TG SSGIGLA AQ +A +G  VVLAARGQDRL KAVD IKA+GGEA GV+ DAS DEDNK+LVD  LE Y  L++SFINAG++    ++EV  + +D+L+  NVKGVA+ALKYQLPAIEKSGG GS+VINSS AG  V   P F GNGP++++KA  D+LM++AAIEA  HGTRVNSIAPG ++T      +EV+D +G  + LM RAGRPEEIA CVCFL SD+ASFVTGTVM+ADGG S+KG
Sbjct:    5 GKVAIITGASSGIGLAAAQQMAAEGAKVVLAARGQDRLGKAVDSIKAAGGEAIGVVMDASIDEDNKRLVDTTLETYGSLNLSFINAGVHLAKPISEVDGSMLDKLYDVNVKGVAYALKYQLPAIEKSGGKGSVVINSSCAGSTVTAFPIFKGNGPYASTKAAVDILMKYAAIEAIDHGTRVNSIAPGAIYTSLVEAPEEVFDSIGKMVHLMPRAGRPEEIARCVCFLASDDASFVTGTVMIADGGASLKG 254

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BLAST of jgi.p|Trimin1|170361 vs. uniprot
Match: A0A835YKB8_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKB8_9STRA)

HSP 1 Score: 286 bits (731), Expect = 3.940e-94
Identity = 155/253 (61.26%), Postives = 189/253 (74.70%), Query Frame = 1

Query:    1 GKVCVVTGGSSGIGLATAQLLAKQGGAVVLAARGQDRLNKAVDIIKASG---GEAFGVIADASKDEDNKQLVDAVLEKYHRLDVSFINAGIYRPATLTEVTEATVDELFATNVKGVAFALKYQLPAIEKSGGHGSIVINSSVAGRVVAEMPEFGGNGPFSASKAGADMLMRHAAIEASRHGTRVNSIAPGIVHTGAANMSQEVWDVLGTTMSLMARAGRPEEIAACVCFLLSDEASFVTGTVMVADGGVSIKG 750
            GKV ++TG SSGIGLA AQ LA +G  VVLAARG++RL++AV+ IKAS      A GV+ DAS DEDNK+LVD  LE Y  L+VSFINAG++R   ++EV  + +D L+  NVKGVA+ALKYQLPAIEKSGG GS+VINSS  G  V   P F GNGP++++KA  D+LM++AAIEA  HGTRVNSIA G V T      +E ++ +G  + LM RAGRPEEIA CVCFL SDEASFVTGTV+ ADGG S+KG
Sbjct:    5 GKVAIITGASSGIGLAAAQQLAAEGAKVVLAARGKERLDEAVNNIKASRRMLAVAIGVVMDASVDEDNKRLVDTALETYGLLNVSFINAGVHRAKPISEVDASMLDTLYDVNVKGVAYALKYQLPAIEKSGGKGSVVINSSCLGSTVTAFPIFKGNGPYASTKAAVDILMKYAAIEAIDHGTRVNSIAAGAVFTNLVGAPEEAFEEMGKMVGLMPRAGRPEEIARCVCFLASDEASFVTGTVLTADGGSSLKG 257

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BLAST of jgi.p|Trimin1|170361 vs. uniprot
Match: A0A835Z2Q8_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2Q8_9STRA)

HSP 1 Score: 255 bits (651), Expect = 3.770e-82
Identity = 143/250 (57.20%), Postives = 180/250 (72.00%), Query Frame = 1

Query:    1 GKVCVVTGGSSGIGLATAQLLAKQGGAVVLAARGQDRLNKAVDIIKASGGEAFGVIADASKDEDNKQLVDAVLEKYHRLDVSFINAGIYRPATLTEVTEATVDELFATNVKGVAFALKYQLPAIEKSGGHGSIVINSSVAGRVVAEMPEFGGNGPFSASKAGADMLMRHAAIEASRHGTRVNSIAPGIVHTGAANMSQEVWDVLGTTMSLMARAGRPEEIAACVCFLLSDEASFVTGTVMVADGGVSIKG 750
            G V VVTG SSGIGLATAQ +A +G  VV+AAR +DRL+KA     A+GG+A GV+ DAS DEDNK+LVD  L+ Y +++VSFINAG++R +   EVT   +DEL+ TNVKGVA+ALK+QL AIE+SGG+GS+VINSS AG  V   P      P    +A A M  R  AIEA  HGTRVNS+APG+V T   +   + ++ L  ++ LM R+GRPEEIA CVCFL SD+ASFVTG V++ADGG S+KG
Sbjct:    6 GTVAVVTGASSGIGLATAQQMAAEGAKVVMAARTKDRLDKA-----ANGGDAIGVVMDASLDEDNKRLVDEALKAYGQINVSFINAGVHRGSVAAEVTGTMLDELYDTNVKGVAYALKHQLAAIERSGGNGSVVINSSCAGSNVTAFPAADHAHP----RACARMQHRAQAIEAIDHGTRVNSVAPGVVRTNLVDRPADAYEALAASVHLMPRSGRPEEIARCVCFLASDDASFVTGAVLLADGGFSLKG 246

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BLAST of jgi.p|Trimin1|170361 vs. uniprot
Match: A0A835ZCI5_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCI5_9STRA)

HSP 1 Score: 245 bits (625), Expect = 4.860e-78
Identity = 136/251 (54.18%), Postives = 170/251 (67.73%), Query Frame = 1

Query:    1 GKVCVVTGGSSGIGLATAQLLAKQGGAVVLAARGQDRLNKAVDIIKASGGEAFGVIADASKDEDNKQLVDAVLEKYHRLDVSFINAGIYRPATLTEVTEATVDELFATNVKGVAFALKYQLPAIEKSGGHGSIVINSSVAGRVVAEMPEFGGNGPFSASKAGADMLMRHAAIEASRHGTRVNSIAPGIVHTG--AANMSQEVWDVLGTTMSLMARAGRPEEIAACVCFLLSDEASFVTGTVMVADGGVSIK 747
            G+V VVTG SSG+GLATA  LA +G  VV+ AR +D+L  A   IKA GG+   V AD SKD  NK++VDA L  Y +L ++F+NAG Y  A + +VTE   D++F  NVK VAF LK+ LPAIEKSGG GS++INSS         P F G G +SASKA ADM+M++AAIEAS+H TRVNSIAPGIV T      M+ E ++     +SL+ R G PEEIA  VCFL SDEA+F+TG+V   DGG  +K
Sbjct:    8 GRVAVVTGASSGMGLATAAQLAAEGAKVVMVARTKDKLEAAAADIKAKGGDVLAVAADVSKDAANKEIVDAALSAYGKLHIAFLNAGTYGGAPVDQVTEELFDKIFDVNVKSVAFGLKHVLPAIEKSGGGGSVIINSSGMALRATANPAFAGGGLYSASKAAADMVMKYAAIEASKHKTRVNSIAPGIVQTAIMGEGMTDESYNAFAAPVSLVGRVGTPEEIAPFVCFLASDEATFITGSVHEVDGGWGLK 258

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BLAST of jgi.p|Trimin1|170361 vs. uniprot
Match: A0A835ZEC4_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEC4_9STRA)

HSP 1 Score: 229 bits (584), Expect = 9.760e-72
Identity = 133/257 (51.75%), Postives = 165/257 (64.20%), Query Frame = 1

Query:    1 GKVCVVTGGSSGIGLATAQLLAKQGGAVVLAARGQDRLNKAVDIIKASGGEAFGVIADASKDEDNKQLVDAVLEKYHRLDVSFINAGIYRPATLTE-----VTEATVDELFATNVKGVAFALKYQLPAIEKSGGHGSIVINSSVAGRVVAEMPEFGGNGPFSASKAGADMLMRHAAIEASRHGTRVNSIAPGIVHTGAANMSQEVWDVLGTTMS----LMARAGRPEEIAACVCFLLSDEASFVTGTVMVADGGVSI 744
            GKV +VTG S+GIGLAT   L ++G  VVL +R QD+L+ AV  IKA  G+   + AD SK+  NK +VD  + KY RLDV+F NAG +  A   E     VT   VD +  TN K V F  KY LPAIEKSGGHGSIV+NSS AG   +      G  P++ASKA  DML+++AA+EA+ H TRV S+APG V T    +  ++ D   T M+    LM RAGRPEE+A  VCFLLSD+ASFVTG+V   DGG SI
Sbjct:    8 GKVAIVTGASTGIGLATTAQLVREGAKVVLVSRSQDKLDAAVAEIKAKDGQVTTLAADVSKEATNKAMVDLAMSKYGRLDVAFFNAGTFAGAPFAEASLGHVTNEMVDTVMDTNFKSVVFGFKYALPAIEKSGGHGSIVVNSSAAGSTASAKSVCAGIAPYAASKAAVDMLVKYAAVEAAPHNTRVTSVAPGTVLTPIFQLFGDMKDSEVTDMAKAIQLMQRAGRPEEVARFVCFLLSDDASFVTGSVHSVDGGASI 264

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BLAST of jgi.p|Trimin1|170361 vs. uniprot
Match: A0A835YUN2_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUN2_9STRA)

HSP 1 Score: 220 bits (561), Expect = 2.430e-68
Identity = 125/251 (49.80%), Postives = 165/251 (65.74%), Query Frame = 1

Query:    1 GKVCVVTGGSSGIGLATAQLLAKQGGAVVLAARGQDRLNKAVDIIKASGGEAFGVIADASKDEDNKQLVDAVLEKYHRLDVSFINAGIYRPATLTEVTEATVDELFATNVKGVAFALKYQLPAIEKSGGHGSIVINSSVAGRVVAEMPEFGGNGPFSASKAGADMLMRHAAIEASRHGTRVNSIAPGIVHTG--AANMSQEVWDVLGTTMSLMARAGRPEEIAACVCFLLSDEASFVTGTVMVADGGVSIK 747
            G+V +VTG SSG+GLATA+ LA +G  VV+ AR QD+L  A   IKA+GG         S D  N+++V A L  Y +L V+F+NAG Y  A + +VTE   +++F  NVK VAF LK+ LPAIE+SGG GS+V+NSS  G      P F G G ++ SKA ADM+MR+AAIEAS+H TRVNS+APGIV T      M+++ +      +SL+ RAG   E++A VCFL SDEA F+TG+V   DGG  +K
Sbjct:    9 GRVALVTGASSGMGLATARQLAAEGAQVVMVARTQDKLEAAAADIKAAGGXXXXXXXXVSTDAANEEMVKAALSTYGKLHVAFLNAGTYGGAPVDQVTEELFNKIFDANVKSVAFGLKHVLPAIERSGGGGSVVVNSSCMGLRAPANPTFTGAGLYAGSKAAADMIMRYAAIEASKHKTRVNSVAPGIVRTELMGEGMTEQGYHDFAAPVSLVGRAGTSNEVSALVCFLASDEARFITGSVHEIDGGWRLK 259

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BLAST of jgi.p|Trimin1|170361 vs. uniprot
Match: A0A836CPZ3_9STRA (Short-chain dehydrogenase/reductase SDR n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPZ3_9STRA)

HSP 1 Score: 210 bits (534), Expect = 1.890e-64
Identity = 123/253 (48.62%), Postives = 155/253 (61.26%), Query Frame = 1

Query:    1 GKVCVVTGGSSGIGLATAQLLAKQGGAVVLAARGQDRLNKAVDIIKASGGEAFGVIADASKDEDNKQLVDAVLEKYHRLDVSFINAGIYRPATLTEVTEATVDELFATNVKGVAFALKYQLPAIEKSGGHGSIVINSSVAGRVVAEMPEFGGNGPFSASKAGADMLMRHAAIEASRHGTRVNSIAPGIVHTG-----AANMSQEVWDVLGTTMSLMARAGRPEEIAACVCFLLSDEASFVTGTVMVADGGVSI 744
            GKV +VTG S+GIGLAT   L  +G  VVL +R QD+L+ AV  IKA  G+   + AD S++  +K +VD  + KY RLD+                T   VD +FATN K   F  KY LPAIEKSGG GSIV+NSSVAG V +  P   GN  ++ASKA  DML+++AA+EA+ H TR+NSIAPG V T      A  +     D L   + LM RA  PEE+A   CFLLSD+ASFVTG+V + DGG S+
Sbjct:    8 GKVAIVTGASTGIGLATTVQLVHEGAKVVLVSRSQDKLDAAVAEIKAKDGQVTTLAADVSQEATSKAMVDLAMSKYGRLDI----------------TNEMVDTVFATNFKSAVFGFKYALPAIEKSGGQGSIVVNSSVAGSVASASPLASGNNAYAASKAAVDMLVKYAAVEAALHNTRINSIAPGTVRTPIFQVFAPGIQDNDIDELAKGIQLMQRAASPEEVARFTCFLLSDDASFVTGSVHLVDGGASL 244

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|170361 vs. uniprot

BLAST of jgi.p|Trimin1|170361 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A836C9I6_9STRA	5.460e-169	100.00	Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr...	[more]
A0A836CAF4_9STRA	3.700e-105	66.67	Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr...	[more]
A0A835YRJ1_9STRA	2.440e-104	66.27	Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr...	[more]
A0A835YQ90_9STRA	4.750e-104	64.40	Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr...	[more]
A0A835YKB8_9STRA	3.940e-94	61.26	Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr...	[more]
A0A835Z2Q8_9STRA	3.770e-82	57.20	Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr...	[more]
A0A835ZCI5_9STRA	4.860e-78	54.18	Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr...	[more]
A0A835ZEC4_9STRA	9.760e-72	51.75	Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr...	[more]
A0A835YUN2_9STRA	2.430e-68	49.80	Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr...	[more]
A0A836CPZ3_9STRA	1.890e-64	48.62	Short-chain dehydrogenase/reductase SDR n=2 Tax=Tr...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_72	contig	Contig_72:606646..611426 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|170361\|e_gw1.72.42.1
Description	oxidation-reduction process
COG category	IQ
Max annot lvl	2759\|Eukaryota
EggNOG OGs	COG1028@1\|root,KOG0725@2759\|Eukaryota
Evalue	4.41e-62
Seed ortholog	2880.D8LQS3
Hectar predicted targeting category	other localisation
TranscriptId	170683
Track	FilteredModels1
ProteinId	170361

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|170361	gene_13468	Tribonema minus UTEX_B_3156	gene	Contig_72 606646..611426 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_13468_1	exon_13468_1	Tribonema minus UTEX_B_3156	exon	Contig_72 606646..606783 +
exon_13468_2	exon_13468_2	Tribonema minus UTEX_B_3156	exon	Contig_72 609637..609786 +
exon_13468_3	exon_13468_3	Tribonema minus UTEX_B_3156	exon	Contig_72 610375..610596 +
exon_13468_4	exon_13468_4	Tribonema minus UTEX_B_3156	exon	Contig_72 611184..611426 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_13468	CDS_13468	Tribonema minus UTEX_B_3156	CDS	Contig_72 606646..606783 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|170361	Trimin1\|170361\|e_gw1.72.42.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_72 606646..611426 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_72:606646..611426+
coding sequence from alignment at Contig_72:606646..611426+

spliced messenger RNA

>mRNA_13468 ID=mRNA_13468|Name=jgi.p|Trimin1|170361|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=753bp|location=Sequence derived from alignment at Contig_72:606646..611426+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGGAAGGTGTGCGTGGTGACAGGCGGATCGTCTGGCATCGGTCTGGCCAC
AGCGCAATTGCTGGCGAAGCAAGGCGGTGCAGTGGTCCTGGCTGCGCGAG
GACAAGACCGTCTAAACAAAGCTGTCGACATCATCAAGGCCAGCGGCGGT
GAAGCGTTTGGGGTCATCGCAGACGCCTCAAAAGACGAGGACAACAAGCA
GCTGGTGGATGCGGTCCTTGAGAAGTACCACAGATTGGACGTCAGCTTCA
TCAATGCCGGCATTTACAGGCCAGCTACATTAACTGAGGTCACCGAGGCC
ACGGTTGATGAGCTGTTTGCCACCAATGTCAAGGGCGTAGCTTTTGCGCT
GAAATATCAGCTGCCGGCCATTGAGAAATCGGGCGGGCATGGGTCAATTG
TAATCAACAGCAGTGTTGCTGGACGTGTGGTGGCTGAAATGCCGGAATTC
GGCGGCAATGGCCCCTTCTCCGCGAGTAAGGCTGGTGCCGACATGCTCAT
GCGCCATGCGGCCATTGAGGCCAGCAGGCACGGCACACGCGTCAACAGCA
TCGCCCCCGGCATCGTGCACACGGGCGCGGCAAACATGTCACAAGAGGTG
TGGGACGTGCTGGGCACAACCATGTCGCTGATGGCGCGCGCAGGCCGCCC
CGAGGAGATTGCCGCGTGCGTCTGCTTCCTGCTGAGCGATGAGGCCTCTT
TTGTGACGGGCACCGTCATGGTAGCAGATGGCGGAGTCAGCATCAAAGGC
TAG

protein sequence of jgi.p|Trimin1|170361

>Trimin1|170361|e_gw1.72.42.1 ID=Trimin1|170361|e_gw1.72.42.1|Name=jgi.p|Trimin1|170361|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=251bp
GKVCVVTGGSSGIGLATAQLLAKQGGAVVLAARGQDRLNKAVDIIKASGG
EAFGVIADASKDEDNKQLVDAVLEKYHRLDVSFINAGIYRPATLTEVTEA
TVDELFATNVKGVAFALKYQLPAIEKSGGHGSIVINSSVAGRVVAEMPEF
GGNGPFSASKAGADMLMRHAAIEASRHGTRVNSIAPGIVHTGAANMSQEV
WDVLGTTMSLMARAGRPEEIAACVCFLLSDEASFVTGTVMVADGGVSIKG
*

mRNA from alignment at Contig_72:606646..611426+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_13468 ID=mRNA_13468|Name=jgi.p|Trimin1|170361|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4781bp|location=Sequence derived from alignment at Contig_72:606646..611426+ (Tribonema minus UTEX_B_3156 )
GGGAAGGTGTGCGTGGTGACAGGCGGATCGTCTGGCATCGGTCTGGCCAC
AGCGCAATTGCTGGCGAAGCAAGGCGGTGCAGTGGTCCTGGCTGCGCGAG
GACAAGACCGTCTAAACAAAGCTGTCGACATCATCAAGGTACCAGACGAC
TTCGAACATGAAGCACCAGTTGTGACGCAATACCTAGTAAACCATGCTTG
ACAAATCGCAAGCAATATATCTGAGATTGCGACGCCAGAATATGTACTAA
TGGCGTCGAACAAGTAACGCGGCAACGCATTGTGCGCGCTGCTAGTGTAA
TGCGACCAGAAGGGGCTTCTCTGTTGATGTCCATCTGCATGGCCTGAGTG
CTGCAGTACAGCCGCTGTACTTTGCAGTGGCAGCGGCCTTCCTACTCTTC
TACCCTGATGGAGTGAATGCGACGCCCGGCAGTATGCCGGCCTACGGCCA
CAGCACAGCGGAACCGCCAGCCCCGCACTGCGCTTTCCTGGATGACCTCA
ACGTGCTGCAAGCTGCCTACTTCGACGATGCAGCGGCCGCTGGGGTGGCA
GAGGTGATCCGCCGGCTGGCGGCAGGGGGCCTACGCGTTCGACCAGACAA
GTCGCTGGCCATCGCCATGCGCGGCACAGTGTTTGATGAAGCGGCCAGAG
CACGCCTGCGCGCCCTTGACATACCGTTTGTGGACACCACCATGCCAGAA
TCCAGTCAGGGCTTTACGTCGGTCGGGGTACCGGTAGGGCACCCAGCCTA
TGTGCACGCTGCCATGAGCAAGCATCTTGTCGACGCAGGGACATGGCGAT
TGTCGTGGCAGCTAGCTGGAATGGCGCGGCATCACCTACAGGCAGCACAG
TTCATTCTACGCAGGTCACTGACGAAGCGCATGGGCTTCTTAGCTCGGGT
CGTTGACACGGCTTTGAGTGAGACATGGTTGCACGCGTTTGACGGGTTCT
GTGCATGGACGCTCGAACGCATGCTGCATCTGCACGGCTGCTCTACCGCG
GCAGCCATGAAGTCACACCTGCTGGCCGCCTGCACTGCTGGTGACAATGA
GGAAGCCAGCAGTGGCAGCGTGCTGGTATTGCCGCGCTTGGGCCCGCCAG
AACTCACGGACATCGCAGTGCCACTGCGGGCGTCACGGTTGCCGGAGCGA
CGAGGCGGTCTGGGCATGCCGCTTTTGGGGCTACTGGCACCAGCCGCATA
CACGGCCCAGGCATGCACAACACTGAGGCCGGCAATAATTCATGCCACTG
TGGCAGCAGGGGCCCTGAGGCTCGGCACTGACGAACACGGCGCAGTCACC
TGGTTCGCGCAGCACTCATGCGCAATACGCGAGGACCAGGGACTGCCGCC
AATCATCGAGGCCGTGCGACGCTCTACGCGAGCGCTGACAGCTGATGGCG
GCGAAAAATCACGCACAGCTGTGGCCGAGCAGCTCCCAGCATCGTTGCTA
CGGTGGGCAGCAGATACGACGGCCGCAGCGTCGACGCTCCCCACTGCGGT
GCAAGCGATCTACGCCGCAACTGCCGTCACGGAGACAGTGACCACTGAGC
CAGCCCCACACACCCACGGCATTGTGCCTGGCGCCGAGGCGGCCGCTGCG
GCGGCGACCGTACCTGGCCCTCAAGCCGCTGCCGCGGCTGCCCCTTCCAC
GCCCGCTAAAACACAAACTAGCGCGGAAGAAAGCAGCTGCAGCGGCGGGC
AGGAGGACGACGACGACGACTGGGAGGCCTATGCTGATGAGATCTGCAGG
AAGGTAGTGCCCCGCCGCCGGCGCGGTCACTTCACGCACGGACTACAAGC
CGGCCTTTCAAATGTTCTTCGACGTCAATACGAGGATTGCCTGGTGGAGG
ACCTAGAGGCTGCCTCGGCTGGTGCCGTGGGCAAGCCGACGCTGCACCTA
TTGGTGACTCGCGCGACACCAGCCGCCGCCGCCAACAGGCTAGCGCACGG
GTCCTGGCGCAGCTGCGCAGCCAGCGTGCGTCCGGGGCAATGGCGTGGAT
GAGCGTGCCACCCACTGCCAATGACCGCCCGGGTGCGGCGCCCATGTCCA
GTATGGCAGCAGCCACGATGATTTTGATTGCGATCTTCATAGACGGGTGG
GGCATACAGGGCGAGGTGTGCCCATGGCGGTGCAGTGATGTGAGCCCCAC
CTCCACGCATGCGATCAGCTGCCCCAGCCAGCACATACGGGGGCACAACG
CGACACACACTGCCCAAAAGCGGTGCCTGCAGCGCATCTTGAGACAGCAC
CATGTCTCTATTGTCCGCAATGAGGACGCTAGCGTCTTCAAGGTACCGGG
GTATCGGGCGGACACAGTCATTGACCCAGGGTGTCTGCACTTTAGCAGTG
CATACCGTAACAAGGGAATAGTGCTAGACACAAGTGTGCGCGCGCCCACA
GCGAGCTCGTACCTGACAGGCAGAACAAATGCCTCGAACACGGACGGCTA
TGCTGCTGGGGTGGGGGAGGACGCGAAGGTCAAGCACCACACCGGCACCT
TGACGTCATCTTGGGCTTTTGTGCCATTCGTGCAGGAGTCGTACGGACGG
CTGGGCAAGCAGACAAGCCTTTTTGTTAAGGAGTTGGCAATGCACTCAGC
ACTGTGCTCAGGGGGGGGGAAGGCAGATGTGTTACGCAAGGCCGGGTTAG
CTAAGCGTCAGATCCTCATTGAGCTGAGCATATCGCTGGCGCGGGAGTTG
GCGGAGCGCGTCATGGCGTACACACGTGGAGCGCGAATGCTGGGCTGTGT
TGCGGCGCCGGTATCCAAGCTCCTAGGGCACAGCGCAGACTAGGCTGCTG
CGTTGACGCAAGCTTTTCGATTGCATAGGCAACCCGGCCTCCCTTGAGCC
TTTATAAATGCAAGTCCATACGTACAGCAACAGCACGCATAGTGTCTATA
CAGTACTTGAGATTTGAGGTCACGAGTAAACATCAGTGCAGGCATATGTG
CCGTTTCACCTGTTCTGATGCATGCACGCCTTGCTGGGCAGGCCAGCGGC
GGTGAAGCGTTTGGGGTCATCGCAGACGCCTCAAAAGACGAGGACAACAA
GCAGCTGGTGGATGCGGTCCTTGAGAAGTACCACAGATTGGACGTCAGCT
TCATCAATGCCGGCATTTACAGGCCAGCTACATTAACTGAGGTGTGCGCC
ATGGCACACCCAGCACAGCCGTACATACTCTGTGGAAGCATGGCAGTGTG
CCAACTGAAACACCGTTGTAATTCGGAGTACTGTACTTCACAGTTGATTT
TCAGTGACAAAGCATACAAGGTCACCAACTTTAAAACCAGCATACCTTAC
CTTGCTCTTGCAGGATACGGATCTCTTGCTAAATGCAAGTCCATATGAGT
GCATAGCACTACTGGCATCCTTTTGCTCATGCTGTCAAGTACGCTACAAG
CCTCAAAGCTCAGACTCCGCACAGAGTGAAAGGCACAAACTGCCAGCAGT
GCTGACACTGCAACAAATGAGGCATTGAGCGGCTGCAGATGTGATGATAC
CAGCTTTCGCGAAGGTGCAGGCCGAACTGCACTGAACCTTGCACCCTTTA
TACTGACAAAAATGAGGCATCTTGACCTGCTGCTACATATGTGGTGCTTT
ACTGTCAGCTAACCCCACTAGTCATCTGCGCACCTTCTACCCTCGGCTTG
GCAACTTGCAAACATGAATTCCTCAGGATCACAAATATTGTGGGTGAGCG
CTGCTACTGCCTGCTGCTGAGCGCTGCAGGTCACCGAGGCCACGGTTGAT
GAGCTGTTTGCCACCAATGTCAAGGGCGTAGCTTTTGCGCTGAAATATCA
GCTGCCGGCCATTGAGAAATCGGGCGGGCATGGGTCAATTGTAATCAACA
GCAGTGTTGCTGGACGTGTGGTGGCTGAAATGCCGGAATTCGGCGGCAAT
GGCCCCTTCTCCGCGAGTAAGGCTGGTGCCGACATGCTCATGCGCCATGC
GGTGAGTAGCTGAAGCTTGGTGCTGCATGCAGCTGCCGCTGTCATTCATG
TTGCCTTTGGAAGTAGCTGGTCTGTTCACGAGAAGCATAGGCATTCCTCA
TTCCGGTTTGTCTGTCTTTGCTTGTCACCAAGTTTATACAGCCCTGAGGC
ATGGCGAAAAATCTGGTTGCTCGCACGTCTAGCATAATTTGTGCCTGCCA
GTAAATAGCCTTCGAGCCTAGTAGAATGAAGAACATCACTGCCATTCCGG
CCACGATGGAGCTATCACGCCCGTGTGCATTCCATCTGAACCAGGAACTC
TACCATAGACTGAGACATTGCTCAAGTTTACGGACTTTATTGTGACCGCA
GGTGTCTACTCAAGGCCAAGCAGTGCGATGCCGGGTGTTGGGGCAAACGT
TGTGCGCATTTCGCTTGGCCACCTTTGCACATGTTTAAGCATCAGTCCTG
GCGTCATGTCGTAGCGCAGAGTGGAAACCTAGTCCAGCATGGGATGCGGT
GAGCATTAACATAATGCCAGTGACACAAGAGCCCCACACAAATGAGTTTG
CCATCTGTGACATGATCTACTGCTGACGCCCCGCACAGGCCATTGAGGCC
AGCAGGCACGGCACACGCGTCAACAGCATCGCCCCCGGCATCGTGCACAC
GGGCGCGGCAAACATGTCACAAGAGGTGTGGGACGTGCTGGGCACAACCA
TGTCGCTGATGGCGCGCGCAGGCCGCCCCGAGGAGATTGCCGCGTGCGTC
TGCTTCCTGCTGAGCGATGAGGCCTCTTTTGTGACGGGCACCGTCATGGT
AGCAGATGGCGGAGTCAGCATCAAAGGCTAG

Coding sequence (CDS) from alignment at Contig_72:606646..611426+

>mRNA_13468 ID=mRNA_13468|Name=jgi.p|Trimin1|170361|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=753bp|location=Sequence derived from alignment at Contig_72:606646..611426+ (Tribonema minus UTEX_B_3156 )
GGGAAGGTGTGCGTGGTGACAGGCGGATCGTCTGGCATCGGTCTGGCCAC
AGCGCAATTGCTGGCGAAGCAAGGCGGTGCAGTGGTCCTGGCTGCGCGAG
GACAAGACCGTCTAAACAAAGCTGTCGACATCATCAAGGCCAGCGGCGGT
GAAGCGTTTGGGGTCATCGCAGACGCCTCAAAAGACGAGGACAACAAGCA
GCTGGTGGATGCGGTCCTTGAGAAGTACCACAGATTGGACGTCAGCTTCA
TCAATGCCGGCATTTACAGGCCAGCTACATTAACTGAGGTCACCGAGGCC
ACGGTTGATGAGCTGTTTGCCACCAATGTCAAGGGCGTAGCTTTTGCGCT
GAAATATCAGCTGCCGGCCATTGAGAAATCGGGCGGGCATGGGTCAATTG
TAATCAACAGCAGTGTTGCTGGACGTGTGGTGGCTGAAATGCCGGAATTC
GGCGGCAATGGCCCCTTCTCCGCGAGTAAGGCTGGTGCCGACATGCTCAT
GCGCCATGCGGCCATTGAGGCCAGCAGGCACGGCACACGCGTCAACAGCA
TCGCCCCCGGCATCGTGCACACGGGCGCGGCAAACATGTCACAAGAGGTG
TGGGACGTGCTGGGCACAACCATGTCGCTGATGGCGCGCGCAGGCCGCCC
CGAGGAGATTGCCGCGTGCGTCTGCTTCCTGCTGAGCGATGAGGCCTCTT
TTGTGACGGGCACCGTCATGGTAGCAGATGGCGGAGTCAGCATCAAAGGC
TAG