mRNA_13460 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|150333
Unique NamemRNA_13460
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|150333 vs. uniprot
Match: A0A835YP95_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP95_9STRA)

HSP 1 Score: 144 bits (362), Expect = 1.130e-43
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 
Query:    1 RLEFTETYRKFLDHFEAKIQSHIEAVGGDDAEFQRQCRRALMDLPQGSERRFFIEALLATTEYQRFFVLMV 213
            RLEFTETYRKFLDHFEAKIQSHIEAVGGDDAEFQRQCRRALMDLPQGSERRFFIEALLATTEYQRFFVLMV
Sbjct:    1 RLEFTETYRKFLDHFEAKIQSHIEAVGGDDAEFQRQCRRALMDLPQGSERRFFIEALLATTEYQRFFVLMV 71
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BLAST of jgi.p|Trimin1|150333 vs. uniprot
Match: A0A6H5JKV0_9PHAE (ARL2_Bind_BART domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKV0_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 8.650e-18
Identity = 42/72 (58.33%), Postives = 51/72 (70.83%), Query Frame = 1 
Query:    1 RLEFTETYRKFLDHFEAKIQSHIEA-VGGDDAEFQRQCRRALMDLPQGSERRFFIEALLATTEYQRFFVLMV 213
            +LEFTE Y  FL HFE KI   IE   GG   +FQ++C+ AL+ L + S RRFFIE LLATT+Y RF+VLMV
Sbjct:   62 KLEFTEVYNLFLTHFEDKISGFIEEEAGGTVEQFQQECKEALLTLEEFSPRRFFIEILLATTDYDRFYVLMV 133
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BLAST of jgi.p|Trimin1|150333 vs. uniprot
Match: D8LHI3_ECTSI (ARL2_Bind_BART domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHI3_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 2.750e-16
Identity = 41/72 (56.94%), Postives = 48/72 (66.67%), Query Frame = 1 
Query:    1 RLEFTETYRKFLDHFEAKIQSHIEA-VGGDDAEFQRQCRRALMDLPQGSERRFFIEALLATTEYQRFFVLMV 213
            +LEFTE Y  FL HFE KI   IE   GG   +FQ++C  AL  L + S RRFFIE LLATT+Y RF+ LMV
Sbjct:   62 KLEFTEVYNLFLRHFENKISGFIEEEAGGTVEQFQQECEEALQTLEEFSPRRFFIEILLATTDYDRFYFLMV 133
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BLAST of jgi.p|Trimin1|150333 vs. uniprot
Match: A0A7S2SVE5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVE5_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.850e-13
Identity = 35/70 (50.00%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:    1 RLEFTETYRKFLDHFEAKIQSHIEAVGGDDAEFQRQCRRALMDLPQGSERRFFIEALLATTEYQRFFVLM 210
            RLE+ + YR++LD FE KI + IE  G    EFQ  C++ L +  + S +RFF+EALLATTEY  F  LM
Sbjct:   33 RLEYYDVYREYLDEFEKKIHTFIERTGHSVDEFQTACQKVLEEEGEFSPKRFFVEALLATTEYPIFLSLM 102
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BLAST of jgi.p|Trimin1|150333 vs. uniprot
Match: F0XZQ0_AURAN (ARL2_Bind_BART domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZQ0_AURAN)

HSP 1 Score: 65.9 bits (159), Expect = 6.800e-11
Identity = 31/68 (45.59%), Postives = 43/68 (63.24%), Query Frame = 1 
Query:   10 FTETYRKFLDHFEAKIQSHIEAVGGDDAEFQRQCRRALMDLPQGSERRFFIEALLATTEYQRFFVLMV 213
            F +TY+ +L+HFE +++ HI A G    +F    R AL +       RFF+EALLATTEY+ F VLM+
Sbjct: 1200 FYDTYKVYLEHFERRVEQHIVAAGATVGDFMAVAREALENASDFDPNRFFLEALLATTEYETFIVLMM 1267
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150333 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835YP95_9STRA1.130e-43100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A6H5JKV0_9PHAE8.650e-1858.33ARL2_Bind_BART domain-containing protein n=1 Tax=E... [more]
D8LHI3_ECTSI2.750e-1656.94ARL2_Bind_BART domain-containing protein n=1 Tax=E... [more]
A0A7S2SVE5_9STRA1.850e-1350.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F0XZQ0_AURAN6.800e-1145.59ARL2_Bind_BART domain-containing protein n=1 Tax=A... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_72contigContig_72:493614..493826 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|150333|gw1.72.82.1
Descriptionfunction. Source PGD
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2C07X@1|root,2SBZW@2759|Eukaryota
Evalue4.51e-17
Seed ortholog2880.D8LHI3
Hectar predicted targeting categoryother localisation
TranscriptId150655
TrackFilteredModels1
ProteinId150333
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150333gene_13460Tribonema minus UTEX_B_3156 geneContig_72 493614..493826 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13460_1exon_13460_1Tribonema minus UTEX_B_3156 exonContig_72 493614..493826 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13460CDS_13460Tribonema minus UTEX_B_3156 CDSContig_72 493614..493826 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150333Trimin1|150333|gw1.72.82.1Tribonema minus UTEX_B_3156 polypeptideContig_72 493614..493826 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13460 ID=mRNA_13460|Name=jgi.p|Trimin1|150333|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=213bp|location=Sequence derived from alignment at Contig_72:493614..493826+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGGCTCGAATTCACGGAGACGTACCGCAAGTTTCTGGACCACTTTGAGGC
CAAGATCCAGTCGCACATCGAGGCCGTGGGCGGCGACGACGCTGAGTTCC
AGCGGCAGTGCCGACGAGCGCTGATGGACCTGCCGCAGGGGTCTGAGCGG
CGCTTTTTCATCGAGGCGCTGCTGGCGACCACAGAGTACCAGCGCTTCTT
CGTGCTCATGGTG
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protein sequence of jgi.p|Trimin1|150333

>Trimin1|150333|gw1.72.82.1 ID=Trimin1|150333|gw1.72.82.1|Name=jgi.p|Trimin1|150333|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=71bp
RLEFTETYRKFLDHFEAKIQSHIEAVGGDDAEFQRQCRRALMDLPQGSER
RFFIEALLATTEYQRFFVLMV
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mRNA from alignment at Contig_72:493614..493826+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13460 ID=mRNA_13460|Name=jgi.p|Trimin1|150333|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=213bp|location=Sequence derived from alignment at Contig_72:493614..493826+ (Tribonema minus UTEX_B_3156 )
AGGCTCGAATTCACGGAGACGTACCGCAAGTTTCTGGACCACTTTGAGGC
CAAGATCCAGTCGCACATCGAGGCCGTGGGCGGCGACGACGCTGAGTTCC
AGCGGCAGTGCCGACGAGCGCTGATGGACCTGCCGCAGGGGTCTGAGCGG
CGCTTTTTCATCGAGGCGCTGCTGGCGACCACAGAGTACCAGCGCTTCTT
CGTGCTCATGGTG
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Coding sequence (CDS) from alignment at Contig_72:493614..493826+

>mRNA_13460 ID=mRNA_13460|Name=jgi.p|Trimin1|150333|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=213bp|location=Sequence derived from alignment at Contig_72:493614..493826+ (Tribonema minus UTEX_B_3156 )
AGGCTCGAATTCACGGAGACGTACCGCAAGTTTCTGGACCACTTTGAGGC
CAAGATCCAGTCGCACATCGAGGCCGTGGGCGGCGACGACGCTGAGTTCC
AGCGGCAGTGCCGACGAGCGCTGATGGACCTGCCGCAGGGGTCTGAGCGG
CGCTTTTTCATCGAGGCGCTGCTGGCGACCACAGAGTACCAGCGCTTCTT
CGTGCTCATGGTG
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