mRNA_13428 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|350784
Unique Name	mRNA_13428
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|350784 vs. uniprot
Match: A0A835YLY6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLY6_9STRA)

HSP 1 Score: 513 bits (1320), Expect = 3.700e-183
Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 1

Query:    1 MLTGKALVRMVQPSVRSFIRNISHYNGGRKSITVVMPDSGLVFKHDIDDSADFKRLRKDFAIAGLYRLDDPEDPSCMRRKWEKVEDGGMYQAITPASVMFEDDEGRFKAQDKGLIHEGNEACLRLLQHRYNNLKMREEGLKLKDGPVDVGELDGFLFDDDTKTAVICEAKWLVRVLDKIDLYKTFGVSNGLPKATTVVAVLVGKYFLYDLRKQASNQGIIVVVSGGAGNWRIFGPRNLLLPLLLSXXXXXXXXXXXXXXXXXLPPTAQGHPSS 819
            MLTGKALVRMVQPSVRSFIRNISHYNGGRKSITVVMPDSGLVFKHDIDDSADFKRLRKDFAIAGLYRLDDPEDPSCMRRKWEKVEDGGMYQAITPASVMFEDDEGRFKAQDKGLIHEGNEACLRLLQHRYNNLKMREEGLKLKDGPVDVGELDGFLFDDDTKTAVICEAKWLVRVLDKIDLYKTFGVSNGLPKATTVVAVLVGKYFLYDLRKQASNQGIIVVVSGGAGNWRIFGPRNLLLPLLLSXXXXXXXXXXXXXXXXXLPPTAQGHPSS
Sbjct:    1 MLTGKALVRMVQPSVRSFIRNISHYNGGRKSITVVMPDSGLVFKHDIDDSADFKRLRKDFAIAGLYRLDDPEDPSCMRRKWEKVEDGGMYQAITPASVMFEDDEGRFKAQDKGLIHEGNEACLRLLQHRYNNLKMREEGLKLKDGPVDVGELDGFLFDDDTKTAVICEAKWLVRVLDKIDLYKTFGVSNGLPKATTVVAVLVGKYFLYDLRKQASNQGIIVVVSGGAGNWRIFGPRNLLLPLLLSXXXXXXXXXXXXXXXXXLPPTAQGHPSS 273

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BLAST of jgi.p|Trimin1|350784 vs. uniprot
Match: A0A835ZDI2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDI2_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.580e-35
Identity = 71/122 (58.20%), Postives = 87/122 (71.31%), Query Frame = 1

Query:  352 GNEACLRLLQHRYNNLKMREEGLKLKDGPVDVGELDGFLFDDDTKTAVICEAKWLVR------VLDKIDLYKTFGVSNGLPKATTVVAVLVGKYFLYDLRKQASNQGIIVVVSGGAGNWRIF 699
            GNEACL L Q RY+ L++ +EG+KL DG + VGELDG LFDDDT TA+ICE K  VR      V DK++LY  FGV+NGL  AT ++  LVGK F   LR++A  +GIIV+V  GAGNWRIF
Sbjct:   54 GNEACLHLQQQRYSQLRILQEGVKLMDGAIVVGELDGLLFDDDTNTAIICEVKPYVRLEDILEVEDKVELYDKFGVANGLLGATKIMVALVGKGFPQHLRERAFKRGIIVLVLNGAGNWRIF 175

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|350784 vs. uniprot

BLAST of jgi.p|Trimin1|350784 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835YLY6_9STRA	3.700e-183	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835ZDI2_9STRA	1.580e-35	58.20	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_72	contig	Contig_72:214816..220308 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|350784\|estExt_Genemark1.C_Ctg_720017
Hectar predicted targeting category	mitochondrion
TranscriptId	351106
Track	FilteredModels1
ProteinId	350784

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350784	gene_13428	Tribonema minus UTEX_B_3156	gene	Contig_72 214816..220308 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350784	Trimin1\|350784\|estExt_Genemark1.C_Ctg_720017	Tribonema minus UTEX_B_3156	polypeptide	Contig_72 214816..220308 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_13428_1	exon_13428_1	Tribonema minus UTEX_B_3156	exon	Contig_72 214816..214897 +
exon_13428_2	exon_13428_2	Tribonema minus UTEX_B_3156	exon	Contig_72 215047..215315 +
exon_13428_3	exon_13428_3	Tribonema minus UTEX_B_3156	exon	Contig_72 215588..215758 +
exon_13428_4	exon_13428_4	Tribonema minus UTEX_B_3156	exon	Contig_72 216324..216501 +
exon_13428_5	exon_13428_5	Tribonema minus UTEX_B_3156	exon	Contig_72 220187..220308 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_13428	CDS_13428	Tribonema minus UTEX_B_3156	CDS	Contig_72 214816..214897 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_72:214816..220308+
coding sequence from alignment at Contig_72:214816..220308+

spliced messenger RNA

>mRNA_13428 ID=mRNA_13428|Name=jgi.p|Trimin1|350784|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=822bp|location=Sequence derived from alignment at Contig_72:214816..220308+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGACGGGGAAGGCGCTGGTGAGGATGGTCCAGCCATCCGTCCGCTC
CTTTATCCGTAACATCAGCCACTACAACGGAGGGCGCAAGTCCATTACGG
TCGTCATGCCAGACAGTGGCTTGGTGTTCAAGCATGACATTGATGACTCC
GCCGACTTCAAGCGACTCCGCAAGGATTTCGCCATCGCAGGCCTCTACAG
GCTTGATGATCCGGAAGATCCCTCTTGCATGCGGAGGAAGTGGGAGAAGG
TGGAAGATGGGGGTATGTATCAAGCCATCACGCCTGCGAGTGTCATGTTT
GAGGATGACGAGGGCCGCTTCAAGGCCCAAGACAAGGGCCTTATACATGA
GGGCAATGAGGCCTGCCTGCGCCTGCTGCAGCATCGCTACAACAATCTTA
AGATGCGAGAGGAAGGGTTGAAGCTGAAGGACGGACCCGTTGATGTGGGG
GAACTCGATGGCTTCTTGTTCGATGACGACACCAAGACTGCGGTCATTTG
TGAAGCGAAGTGGCTTGTCAGGGTCCTGGACAAGATTGATCTGTATAAGA
CGTTCGGTGTCTCAAATGGCCTGCCGAAGGCCACTACCGTGGTGGCGGTT
TTGGTCGGCAAGTACTTCCTATATGACCTTCGCAAGCAGGCGTCTAACCA
GGGCATCATTGTGGTGGTGTCAGGCGGCGCTGGCAACTGGCGCATCTTCG
GTCCGAGGAACCTGCTGCTGCCACTGCTGCTGTCGGCGCTGCTGCTGCTG
CTGCTGCTGGCGCTGCTGCTGCCGGCGCTGCTGCTGCTGCCACCAACTGC
ACAAGGGCACCCCAGCTCCTAG

protein sequence of jgi.p|Trimin1|350784

>Trimin1|350784|estExt_Genemark1.C_Ctg_720017 ID=Trimin1|350784|estExt_Genemark1.C_Ctg_720017|Name=jgi.p|Trimin1|350784|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=274bp
MLTGKALVRMVQPSVRSFIRNISHYNGGRKSITVVMPDSGLVFKHDIDDS
ADFKRLRKDFAIAGLYRLDDPEDPSCMRRKWEKVEDGGMYQAITPASVMF
EDDEGRFKAQDKGLIHEGNEACLRLLQHRYNNLKMREEGLKLKDGPVDVG
ELDGFLFDDDTKTAVICEAKWLVRVLDKIDLYKTFGVSNGLPKATTVVAV
LVGKYFLYDLRKQASNQGIIVVVSGGAGNWRIFGPRNLLLPLLLSALLLL
LLLALLLPALLLLPPTAQGHPSS*

mRNA from alignment at Contig_72:214816..220308+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_13428 ID=mRNA_13428|Name=jgi.p|Trimin1|350784|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5493bp|location=Sequence derived from alignment at Contig_72:214816..220308+ (Tribonema minus UTEX_B_3156 )
ATGCTGACGGGGAAGGCGCTGGTGAGGATGGTCCAGCCATCCGTCCGCTC
CTTTATCCGTAACATCAGCCACTACAACGGAGGTGTGAACCCCGTTATGC
AGGATCTTTCGTCATTGTGTCTGAGCTAGCAGCATCCTGGCTACCATGGT
GAGCGCAATATTATCGATAAGTTCAAGAATCTGGACCTGTCTCTTTTGCC
TATCTGCTTCTCTCCGTGCTGCGTCTCTCAGGGCGCAAGTCCATTACGGT
CGTCATGCCAGACAGTGGCTTGGTGTTCAAGCATGACATTGATGACTCCG
CCGACTTCAAGCGACTCCGCAAGGATTTCGCCATCGCAGGCCTCTACAGG
CTTGATGATCCGGAAGATCCCTCTTGCATGCGGAGGAAGTGGGAGAAGGT
GGAAGATGGGGGTATGTATCAAGCCATCACGCCTGCGAGTGTCATGTTTG
AGGATGACGAGGGCCGCTTCAAGGCCCAAGACAAGGGCCTTATACATGAG
GTGAGCGTGGCTGAACACTGTTGTTGTTGTGAGGTGTATTTTTTGTAAGA
TGCAGCAGCAAGTCATTCAACCTGATGAGTCACTTGCCCGCATGTGTTTG
TGCTGCATTGTGGTGCTGCACTCTTTTCGGTCAGCGTTGCAATCCAGCTG
CTGCAGACAGCAGAGGGCATTCATTCAACTGAGCAGTAAACTGATATGTG
TATATTGGTCAATCATGCCATGATGCCCGCTTACATTGCCTGGCTGTATC
ACACTGTTCGCACCCCGGTCAGGGCAATGAGGCCTGCCTGCGCCTGCTGC
AGCATCGCTACAACAATCTTAAGATGCGAGAGGAAGGGTTGAAGCTGAAG
GACGGACCCGTTGATGTGGGGGAACTCGATGGCTTCTTGTTCGATGACGA
CACCAAGACTGCGGTCATTTGTGAAGCGAAGTGGCTTGTCAGGGTAAGTG
ACCCCCATGTGCCATTACCATTGTTGTCAGGCTCTGATTGTTGCTTGTCT
ACAATCACTTCGTCTGACATGTTTGTATGTTTGAGCATACGGTGGCATGC
CCAAGCTTGTGAAAGCGATGTCGGTGTGACAGCATAGTATTGAAGTCTGG
ACTGCCAGTCGCTGACCACGTTTTCACCATGAAGGATTGTGTGCAAATGT
TTGCAAGGTGTAATCGCACAACATCTCCTTGCCACTGTGTGCAAGTAGAC
GGGGACATAGGACTCGCCGGTACATGGTCAGAGCAGTGCGCTGGTGTCTA
TAAACTACATTTGCTGGCGGATGATTTGTGATGTCATTATCCCGCAGCAA
TCACTTCCCGCAGCAATGAGCCTTTCTGTCTTTGAGCGCACACCTCTACC
CTTTTATGAATCTCATTGCCTGTGTAGCACTTGCCGAGGATGCCTTGATC
CTTTCAGTACTGCAGTCCTCACTGTGCGGCACGTCGTTCATCTGACAACA
CATTCTGCTTGCTGGCAATCGTCTCTTTTGATACTTGCAGACTGCCCATG
TGCTGCAGGTCCTGGACAAGATTGATCTGTATAAGACGTTCGGTGTCTCA
AATGGCCTGCCGAAGGCCACTACCGTGGTGGCGGTTTTGGTCGGCAAGTA
CTTCCTATATGACCTTCGCAAGCAGGCGTCTAACCAGGGCATCATTGTGG
TGGTGTCAGGCGGCGCTGGCAACTGGCGCATCTTCGGTAATAACCTTGCA
ATTGCATGATGTGTTGTGTGCAATGCAGCAAGCATATGTGCGGCAGCGTT
GTGTGGCACGCGCTCTTCCTGCAGTGTGCTGATCAAGAAGCGTGCCCACC
CTACAGTATGCTTGATTTGCAGTGCACTGTTACTTTTGCTTTCGCCTGTA
CTTTAGTGTCAGCACACACTGAGGTAAACTTTGTTGAGGTGTCGGCTTTT
GACACCACAATGCAAGTGCTGCTTTGACAGCAGCTAGCCCCTGTTTGTGC
ACAAAGAACTGTTCGGCTATCACATATTGTGTTCATCCCGACGCTGCATT
TGCACATTGATTTGGTACAAGCAGATGACAAGGCTACCAAGACTGGGCGC
GTCACTATCAGCGCACCAGGACCATGAACACATTGACGACCTGTGAGGTG
AGACGCAACAATATCGAAACGTATCAGCTTTCTTGCTTGCATTTGTACTT
TCAGCCATGCAGGATCTATTAGAAGCAGTCTGTGCGAGGGCTAAGATGTC
GGCAATTTGTGGTACATCACCTCTGCGTTCCCATATCACAAACCATTCTC
GTCTCCATGCTTTTCCCATGCAGAGCACGCCTGAGATATGGACCCAAATG
TGCAGCATGATTGGCGTCAAGCTTTACACTGACTGCATGTCCACCACTGC
TTGTTGTGATGCAGATTTGCTGCCACGAAGGACAGCGACGCGCAAACCAA
CAGCAACAAGCGCAAGAGCGGCAGGCCCACCGACGAATGCGACCGAATGA
ACTTGATTGGCCGCAATCATTGGCGATGGCTTCTGTGTCTCAAGTGCCGC
TCATGTACTTAAGAGCCTTTGCGGAGCCTCTCAGTGTGGTCTGGCATGGC
CCCCTTCTTCAGGGATCTGCTGGCCTGCATTGATGTCGCATGAGTTTGTG
CATGCACCGTGGTCTGCTCTGCTGGCGACGTACCCTCCCTCTGCTTCACT
GCTGTCCCAGCTTGACAGAATTGTCTTCTAATCCAAAATTCCCTTTAACG
TGCTGCTGGTCTATGCTTACCATATACCATCAGCCATGTTCTGATTCCAG
AGATCAATATTTTAGGGTTTTGTTCTCGATAGATGAGCAAATGCATATCT
GATCCAGCTATTTGATCCAGCTACTGTAACAGCAGTTGCAGTAATTGAGC
GGCCGGAATATGTTGCAGCAACAACATGCACAGCACGGTTTGAACTGGTC
CCGACGTTGTCGTCGCAATTCACAAATGGCACACTTGTGTGATGCCCCAA
CCACCTCAGCACTGGCCTTTCAGCTGAATGCCTGCATATGTGGATGTACC
CACCACATATTTTGTACGCACCTGAGCCATAAATGTGGACCACGCGCACA
TTCTCAAAGAGTTCTAACACCTGCTGCACATGATTGCCCATGCCGATTGG
TGCATTTTCGCCCCTGTGCGGAAGTGGCTACGGAATCAGCCAAGCATGGT
GACAACATGGCATGAAAAGAAATTCAACAACAGTTGCTGTGCATCTTAAA
CCTGCACGGCATAAGACGCTGTGTGTCACACAGGTGTGAAACAACCATAT
TCATACCACCAACACAATGTCACTTTTGACAACTAAAACAAGAGGAAAAC
AGTCGCATACGTTGTTCCATGGGATTTGAAGAAGAGCAAAGAACTTGCTA
GCATCACAACTACCTTACTAATGAGCTACAACAATAGTATCAACAGCACC
ATACATTTGTAACAATGCACAGCATGATGCACTTGCAATCACATATCCCA
TGGATGCACAAAAACAGCAGCAATTGAAGCATATTCCAGGCTGAGCATAC
ACACTCAACAACCAGATGTGTCAGAAGTAGAGTAGCTGATCATCGTTTTT
GTTAAACTACCCTAGAAAATCTAAAAACAACAACAGTGGGGAGCATCAGA
GGCCATGGGAGCGCCTCGCACATTGGCAAGTCTGACTCATAATTCTACTT
CAGAATCGTTTGCCTTTTGAACACCTCTGGGGTTGATCGTCGCAGGACGG
CCACGATGAAGTCCTTAAGGAACATGTAGCGTGGGTCTGTCTTCTTGCTC
GTTGGCTTGCACATGTTGATGTGATTTGCATTCAGCCCATGGGATACAAC
CCTCCATAAGATGCAGACGTCTCACTGACCACAATCTGCGCCACAAACCA
TCCCTGCAGGTGATGAGGATCCACAAAGTGGAAGAATCTAAGTTGTTTTG
TACAGTAGAACGGTATAAAGCAGCTGCTGACTTCATGTTCAACGGTGACC
GTCAATGTGAACGGGGCTGCAAGTACAGTTGCCACCATCAAAAGCGGAAG
GCCCTGGGCTAGTTGATGTTCACTTTGAAGGCGGCGTAGCTTGCTGAAGG
TTCAGATTCCCCGGGGGGGGTGGTGCCAGCTTGCGCTGCAGTCATGATGT
GCAACGCTGCAAGTATGCCAGCAAGAAAGCCAATTAACTGTCACGATCGC
GATGTATGCTGATGAGCCCGCATACGGTGACGAAAGTCGATCGTTGATGT
TGACCACAGATGTATGGCATATGCGCAGCAATTTTTTGTCACAACACCCA
TAACGCTTTGATAGTCCTATAGGGACCGCAGAGCCAAGAGGCACGAAGCC
ACTGCTGACCTTGTCAGTGCAAAAACGCATGAATTGCTCGGTGCGGTCTG
CGGTCAACATGAAGCGCACTATTGTAAACAAAGTAGCGGTAGATTTGTCT
TTCTTGAACCTTCAAGTTCTGAGTAGATTTGATTTGCAGTTGCGAACATT
GATCAATGGCGGTCTTGGCTACGACTTGAATGGACCTATTTATCCTGCAG
TCAAGGCCCTATCTCTACATGCTGACAATCAAGGCAACAGCAAAATTGAT
GCAGGTAATACAAGAGGATATGTGCATGTTGAGATTGGGTCCTGTTGGGC
ACTGACACGGCTGTTCATCTTTGCCTCGTGATTGTCAATGATCACTTCTT
GTAGCAGCACATGCACTTATAGAAGCCGCGAGCCTTGCATCTGCTTGGGT
CCCTTGGTAGTCCGGCTCTGGCACGGCAGCGAGATATTTACGCTCCCAAA
GCCCAAAGCTTGTTCATACACGATGAGGTAGTGCTAGCAGCTGCAAGTGC
GGTGCAGCCAGCCGCGGGCAGCAAAGCTGATGCCCCAACCAGTGGGGTAC
CGAAATTGCCAGACTGCAGAAATTGCCAATCTGCAGAGCTGGCGACGCCA
TGGGCTTCAGCGCGTTCCAGCACACATCTCTTGCAGGCGGCACTCGAGAG
GAGTGGTTGTAGCAACCGTGGGAGCCATCAGGCCCCACAATAGGGGATGC
CCTCACAGGTGGGTCCTGCAAAGCTGCTGCTGCTGGCGACTCACAGGGCT
TAACGCCCTCCAGTCCCCAACTGCATCTGATACAATGATTGCATAAGCAA
AACTCCAGAGGTGGTTGCGGCAGTCATGGGCGCCACCATGATGATGAGGC
CTGCATATGGTGCATCTGTACGCACTGCACAGGTGTGAGGATTACAAAGC
TGCTGCTACTGGCGCTGCTACTGTTGCTGCTGCTGCTGCTGCTGCTGCTG
GTGATTCCGCATGCGCACTGCAGCCTCCAACTCTATTCTCAGCATGCAGG
CAACACTCCACAAGAGGGGATGTGGCAAATCTGTACGCCATCAGGCCCCA
GGATAGTGCCTTTGCATGGAGGTCCGAGGAACCTGCTGCTGCCACTGCTG
CTGTCGGCGCTGCTGCTGCTGCTGCTGCTGGCGCTGCTGCTGCCGGCGCT
GCTGCTGCTGCCACCAACTGCACAAGGGCACCCCAGCTCCTAG

Coding sequence (CDS) from alignment at Contig_72:214816..220308+

>mRNA_13428 ID=mRNA_13428|Name=jgi.p|Trimin1|350784|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=822bp|location=Sequence derived from alignment at Contig_72:214816..220308+ (Tribonema minus UTEX_B_3156 )
ATGCTGACGGGGAAGGCGCTGGTGAGGATGGTCCAGCCATCCGTCCGCTC
CTTTATCCGTAACATCAGCCACTACAACGGAGGGCGCAAGTCCATTACGG
TCGTCATGCCAGACAGTGGCTTGGTGTTCAAGCATGACATTGATGACTCC
GCCGACTTCAAGCGACTCCGCAAGGATTTCGCCATCGCAGGCCTCTACAG
GCTTGATGATCCGGAAGATCCCTCTTGCATGCGGAGGAAGTGGGAGAAGG
TGGAAGATGGGGGTATGTATCAAGCCATCACGCCTGCGAGTGTCATGTTT
GAGGATGACGAGGGCCGCTTCAAGGCCCAAGACAAGGGCCTTATACATGA
GGGCAATGAGGCCTGCCTGCGCCTGCTGCAGCATCGCTACAACAATCTTA
AGATGCGAGAGGAAGGGTTGAAGCTGAAGGACGGACCCGTTGATGTGGGG
GAACTCGATGGCTTCTTGTTCGATGACGACACCAAGACTGCGGTCATTTG
TGAAGCGAAGTGGCTTGTCAGGGTCCTGGACAAGATTGATCTGTATAAGA
CGTTCGGTGTCTCAAATGGCCTGCCGAAGGCCACTACCGTGGTGGCGGTT
TTGGTCGGCAAGTACTTCCTATATGACCTTCGCAAGCAGGCGTCTAACCA
GGGCATCATTGTGGTGGTGTCAGGCGGCGCTGGCAACTGGCGCATCTTCG
GTCCGAGGAACCTGCTGCTGCCACTGCTGCTGTCGGCGCTGCTGCTGCTG
CTGCTGCTGGCGCTGCTGCTGCCGGCGCTGCTGCTGCTGCCACCAACTGC
ACAAGGGCACCCCAGCTCCTAG