mRNA_13425 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|350782
Unique Name	mRNA_13425
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|350782 vs. uniprot
Match: A0A835YV54_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV54_9STRA)

HSP 1 Score: 337 bits (865), Expect = 1.540e-115
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 1

Query:   13 MRTGLGLALLTVAANVCPACSFQAWTRSGVGRAAVASSAKCRTRALLMSEAPASEAPAVPAAPASLDVKIAGMQETAGGFISHLEVHIFRTVTTHKIIIAKANLQDLSERTGKPVDVEQVLKHIVEFMVDKKMPLDNTEGMIDAGVFPVNYFTAGQLAQFHPELWDKLAETLASD 537
            MRTGLGLALLTVAANVCPACSFQAWTRSGVGRAAVASSAKCRTRALLMSEAPASEAPAVPAAPASLDVKIAGMQETAGGFISHLEVHIFRTVTTHKIIIAKANLQDLSERTGKPVDVEQVLKHIVEFMVDKKMPLDNTEGMIDAGVFPVNYFTAGQLAQFHPELWDKLAETLASD
Sbjct:    1 MRTGLGLALLTVAANVCPACSFQAWTRSGVGRAAVASSAKCRTRALLMSEAPASEAPAVPAAPASLDVKIAGMQETAGGFISHLEVHIFRTVTTHKIIIAKANLQDLSERTGKPVDVEQVLKHIVEFMVDKKMPLDNTEGMIDAGVFPVNYFTAGQLAQFHPELWDKLAETLASD 175

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BLAST of jgi.p|Trimin1|350782 vs. uniprot
Match: D7FYU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYU6_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 3.050e-22
Identity = 49/114 (42.98%), Postives = 76/114 (66.67%), Query Frame = 1

Query:  181 PAVPAAPASL--DVKIAGMQETAGGFISHLEVHIFRTVTTHKIIIAKANLQDLSERTGKPVDVEQVLKHIVEFMVDKKMPLDNTEGMIDAGVFPVNYFTAGQLAQFHPELWDKL 516
            PA  AAP      + +  +QET  G+IS ++V  F+  T H+I+++K  L   SE  GK V+V  ++ +++++M+DK + LDNTEGMI+A VFPVNYFT  QL+ FH ++ +K+
Sbjct:    8 PAAAAAPIKKKRSITVQFVQETPAGYISVVDVKNFKATTNHRIVMSKEQLAQYSELAGKKVEVGDLMGYVMKYMLDKGIKLDNTEGMIEASVFPVNYFTLKQLSYFHDDVEEKI 121

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BLAST of jgi.p|Trimin1|350782 vs. uniprot
Match: W7TI06_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TI06_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 6.090e-16
Identity = 53/143 (37.06%), Postives = 79/143 (55.24%), Query Frame = 1

Query:  115 VASSAKCRTRALLMSEAPASEAPAVPAAPAS--LDVKIAGMQETAGGFISHLEVHIFRTVTTHKIIIAKANLQDLSERTGKPVD---VEQVLKHIVEFMVDKKMPLDNTEGMIDAGVFPVNYFTAGQLAQFHPELWDKLAETL 528
            V  SA CR      +  PA+EA    AAP     ++ I  + E+ GG+++ +EV  F+ VT H +I +K   Q+     GK  D   +E   + + +F++ K +PL  TEGMIDAGVFP+NYF+  QLA F  +  + +A  L
Sbjct:   33 VRKSADCRVWMSSAAVPPATEASPAAAAPTRPRREINILQVIESNGGYMAKVEVKNFKDVTEHTVITSKELYQETCALAGKTPDELPIEDYYRGVFKFIIGKGLPLTRTEGMIDAGVFPINYFSVSQLAIFLDDTVEGVAAEL 175

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BLAST of jgi.p|Trimin1|350782 vs. uniprot
Match: A0A7S1K9Y0_9ALVE (Hypothetical protein n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1K9Y0_9ALVE)

HSP 1 Score: 80.5 bits (197), Expect = 2.800e-14
Identity = 40/104 (38.46%), Postives = 65/104 (62.50%), Query Frame = 1

Query:  214 VKIAGMQETAGGFISHLEVHIFRTVTT-HKIIIAKANLQDLSERTGKPVDVEQVLKHIVEFMVDKKMPLDNTEGMIDAGVFPVNYFTAGQLAQFHPELWDKLAE 522
            +K+  + E  GG++S + +      TT H + +      D+  +  + VD E ++K+I +FM+D+KM +DNTEGMID+ VFPVNYF+A Q+   H +  D+LA+
Sbjct:  146 IKVEYVDEWNGGWMSDVVIDYGGGKTTKHTVTVGFFLYNDVVTKANREVDPETLVKYIFKFMLDRKMSMDNTEGMIDSSVFPVNYFSAAQVEYVHEDFRDRLAD 249

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BLAST of jgi.p|Trimin1|350782 vs. uniprot
Match: A0A0G4H3W5_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H3W5_VITBC)

HSP 1 Score: 80.5 bits (197), Expect = 1.580e-13
Identity = 40/104 (38.46%), Postives = 65/104 (62.50%), Query Frame = 1

Query:  214 VKIAGMQETAGGFISHLEVHIFRTVTT-HKIIIAKANLQDLSERTGKPVDVEQVLKHIVEFMVDKKMPLDNTEGMIDAGVFPVNYFTAGQLAQFHPELWDKLAE 522
            +K+  + E  GG++S + +      TT H + +      D+  +  + VD E ++K+I +FM+D+KM +DNTEGMID+ VFPVNYF+A Q+   H +  D+LA+
Sbjct:  465 IKVEYVDEWNGGWMSDVVIDYGGGKTTKHTVTVGFFLYNDVVTKANREVDPETLVKYIFKFMLDRKMSMDNTEGMIDSSVFPVNYFSAAQVEYVHEDFRDRLAD 568

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|350782 vs. uniprot

BLAST of jgi.p|Trimin1|350782 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5


Match Name	E-value	Identity	Description
A0A835YV54_9STRA	1.540e-115	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
D7FYU6_ECTSI	3.050e-22	42.98	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
W7TI06_9STRA	6.090e-16	37.06	Uncharacterized protein n=2 Tax=Monodopsidaceae Ta...	[more]
A0A7S1K9Y0_9ALVE	2.800e-14	38.46	Hypothetical protein n=1 Tax=Vitrella brassicaform...	[more]
A0A0G4H3W5_VITBC	1.580e-13	38.46	Uncharacterized protein n=1 Tax=Vitrella brassicaf...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_72	contig	Contig_72:201993..205884 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|350782\|estExt_Genemark1.C_Ctg_720015
Hectar predicted targeting category	signal peptide
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-19_002530.1
TranscriptId	351104
Track	FilteredModels1
ProteinId	350782

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350782	gene_13425	Tribonema minus UTEX_B_3156	gene	Contig_72 201993..205884 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350782	Trimin1\|350782\|estExt_Genemark1.C_Ctg_720015	Tribonema minus UTEX_B_3156	polypeptide	Contig_72 202005..205630 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_13425_1	exon_13425_1	Tribonema minus UTEX_B_3156	exon	Contig_72 201993..202073 +
exon_13425_2	exon_13425_2	Tribonema minus UTEX_B_3156	exon	Contig_72 202727..202864 +
exon_13425_3	exon_13425_3	Tribonema minus UTEX_B_3156	exon	Contig_72 203655..203749 +
exon_13425_4	exon_13425_4	Tribonema minus UTEX_B_3156	exon	Contig_72 204349..204465 +
exon_13425_5	exon_13425_5	Tribonema minus UTEX_B_3156	exon	Contig_72 205522..205884 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_13425	UTR5_13425	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_72 201993..202004 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_13425	CDS_13425	Tribonema minus UTEX_B_3156	CDS	Contig_72 202005..202073 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_13425	UTR3_13425	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_72 205631..205884 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_72:201993..205884+
coding sequence from alignment at Contig_72:201993..205884+

spliced messenger RNA

>mRNA_13425 ID=mRNA_13425|Name=jgi.p|Trimin1|350782|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=794bp|location=Sequence derived from alignment at Contig_72:201993..205884+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCAGCGGGAACGATGAGGACAGGACTCGGGCTCGCGCTTCTCACGGTGGC
AGCCAATGTGTGCCCAGCGTGCTCCTTTCAGGCATGGACACGCTCTGGCG
TGGGGCGCGCAGCTGTTGCATCCTCGGCGAAGTGCAGAACCAGAGCGCTG
CTGATGTCGGAGGCGCCAGCATCGGAAGCTCCAGCAGTGCCTGCAGCGCC
AGCCAGTCTGGATGTGAAGATTGCAGGCATGCAGGAGACAGCAGGGGGGT
TCATTTCGCACCTGGAAGTGCACATATTCAGGACCGTGACAACACACAAG
ATCATCATTGCAAAGGCTAACCTCCAGGACCTGTCGGAGCGTACTGGCAA
GCCAGTGGATGTGGAGCAAGTGCTCAAGCACATTGTGGAGTTTATGGTGG
ACAAGAAAATGCCCCTGGACAACACTGAAGGCATGATTGATGCCGGCGTG
TTCCCTGTCAACTACTTCACCGCGGGGCAACTTGCACAGTTCCACCCAGA
GCTGTGGGACAAGCTGGCGGAGACACTGGCCTCAGACTAAGCCCTGAATC
CAGCTCTTGCGGTCGGCAGCGCAAATATTTGATCCAGGCCCAGCCAGTCA
TTTTTGCTGCTGAGCCTCTACATCGCCTCTTTTTTGCCAATTGGGATACA
CATCATTCATAGAGCTGGACAGCCTCAAGGGCAGCAAGCAGCGAACGCGC
ACACTGCGCATTGAAAGCGGGCAGTGTGTAGGATTTTGTCACGAGGCGAA
TGATTTGACGTCAGAGATGCCTTGATAAAACTATTCTTTTGTGC

protein sequence of jgi.p|Trimin1|350782

>Trimin1|350782|estExt_Genemark1.C_Ctg_720015 ID=Trimin1|350782|estExt_Genemark1.C_Ctg_720015|Name=jgi.p|Trimin1|350782|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=176bp
MRTGLGLALLTVAANVCPACSFQAWTRSGVGRAAVASSAKCRTRALLMSE
APASEAPAVPAAPASLDVKIAGMQETAGGFISHLEVHIFRTVTTHKIIIA
KANLQDLSERTGKPVDVEQVLKHIVEFMVDKKMPLDNTEGMIDAGVFPVN
YFTAGQLAQFHPELWDKLAETLASD*

mRNA from alignment at Contig_72:201993..205884+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_13425 ID=mRNA_13425|Name=jgi.p|Trimin1|350782|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3892bp|location=Sequence derived from alignment at Contig_72:201993..205884+ (Tribonema minus UTEX_B_3156 )
GCAGCGGGAACGATGAGGACAGGACTCGGGCTCGCGCTTCTCACGGTGGC
AGCCAATGTGTGCCCAGCGTGCTCCTTTCAGGTGCATGCAACTTGCAGAA
GAGGTCCAAACGACGCTAGATCTTTGAGCACCACTTCTTTGGTTGAACAT
GCATTCATTGGCAGGCGATCTAACGGGTTGCTCTGCATCAGAGCAGGTAG
ACGTGCACTTCATATAATCGCCGTTCTTGTCAAGTGCCCGCCGCACCTTT
CAACACTTGTTGTCCGAGCTAGCGGTGTATGTGCAATTGAATGATGGATC
CTGTAAGTTGGCTTGCATGCATCTCTGGAGATGTCGTTTGACATAAGACG
TAATGATTCATTCGTGATAGGATACTTTGCTCAGCAACAGCAGGCGCATC
AGCAGCACCACTTCACGACTTAGCGCCGGTGTCTGTCACGATGTCACGAT
CAACTGTACAAAACTGCACCCTTAATCAGCATGTCAACTGTCGCATGGCC
GGGCAGTGCCTGAGGCGCCTGATGATTTTGTACTCAGATCTTCTTGGAGT
TATAGTTGGCAACACCCTGTTTCTCTTTCGCACCATTATTCGAATGACAC
ATCGCCGAGGAACCCGGCATATTTCACCGTTGGTGGCGCAGCTTGAGTGT
TTGCAACACACTGCAGACCACATCATTTCTTCGTGACATTGTCACGATGC
ATGATTTGCGCATCATTATTGAATTCTCGAATAGGCATGGACACGCTCTG
GCGTGGGGCGCGCAGCTGTTGCATCCTCGGCGAAGTGCAGAACCAGAGCG
CTGCTGATGTCGGAGGCGCCAGCATCGGAAGCTCCAGCAGTGCCTGCAGC
GCCAGCCAGTCTGGATGTGAAGGTTAGGAAGACTCAATGTGACTTAGACT
TTGGTGGGGTGATTGGCACATCTTGCATGATCACATACCCGCAGTCTCTC
TGATTGCTATGCATAACTGTGAAGTTCATTCTCAAACCCGCTTCAGATCA
ATGATGCTGATTGGCAGAGTTTGCAGGGTTGTCTCGTGAGTTTTGTCACT
GCTTTGAAAGGCCGTAACATTTGATGCTGATAAGCTTCAGCCATAGATGC
CATGACTGCACCTGAATACGGCTAGTGCAGGTCTAGCAATGTGCGAAAGC
CGCCGGTGCAGTTACGCTGCCATCAAATGGATATGTGGGGCAGCATTGTG
ACTGTACATCTTGCACAACAGCAGAAATGCCAAGGCCAGACAAAACCAAG
CAACGTAGTGAACGCAGTGCGATTCAAGACTATCACTTTGAAGACTCAGC
AGTCCCGAGTTTTATACCGACATGCTTGAAGAAGTCAGCTGTCTTTTGGT
TTCCCTGCCAGCACCGTTCTAGACAGCATGTGTCTGTTTGGGTAGCAGTC
CTTTCAGCCACCATAGTCAAATCGAAAATTGTTTGTGATGCATAGCTCTC
GGTTATCTGCCAAACAACATGTCTACGCCACGCAGCTTTTGGAATTCCTG
CTGCGGTGCAAGTATGCGTTTCTGGCATCCTTCATACAATTCAACAATTA
CATGTACAGTAGTAGAGTACACCTTGTGGGGGTGTAGTTTGCATGTACAT
CAAAATCCAAGATGCATCATATGCTTGTCGTCTTGTGGTTTGTATGGTGT
GCTTGCGCACAGATTGCAGGCATGCAGGAGACAGCAGGGGGGTTCATTTC
GCACCTGGAAGTGCACATATTCAGGACCGTGACAACACACAAGATCATCA
TTGCAAAGTGAGTGTGCAAGGGTGTGCAATGCGACTCAAGCCATTGTCCG
CACAAAATGTCAGTGCGTCTCATGGAATCGAATAGTATATATACACCGCC
TTCCTTATTACCACAGCTGTGTGCGCTGCGGCTTGCCTTTCATTCTTAGT
CATATGTTGACTATGGAGTACAATCAGCCCGTGGTCTGCGCATTGAGCCT
CACACCCGTTGTGCTGCTGCTGGGCACCATGCGAGTATTATGAACAAGGG
CCACTATGACCACCGTAAATGAACACCAGCATATGCAGCAATACGACAGC
CCTCAAAACTCCATGCTGTTTGTAGTCAAACCAACGTTTCAGTTAGTGGC
TCAAGAAGTCAGGGCACAATGGGCATGATCTGTAGTCAAAGAGGTTCACT
CACCTAGTCGTACCACGCTGAGGCCTTCCTGCTGAATTGGCAGGCTTTGA
ACAGCGTACCCTCCGGGTTGATACATGTATATACTTCTACATGGCAACAG
TGCACGTGGAGATTCCTGCATCAAGGCCTGCTTGATTCCTAGCATCTGCA
CTGTCGATTATGGCTCATATTGCTGGCAAAAACCTGGTATGTATGTCGTA
CCACAGGGCTAACCTCCAGGACCTGTCGGAGCGTACTGGCAAGCCAGTGG
ATGTGGAGCAAGTGCTCAAGCACATTGTGGAGTTTATGGTGGACAAGAAA
ATGCCCCTGGACAACACTGAAGGGTAAGTAAGCACCATATCACATTGCTG
GCCTGCAGTTGCAGAATACCCTAGAGGGTATCGACGTGTGGCGTTCGCCT
TTGTCTATCGATGACGAACATCAGAATATCGGTCCAGCAACAGTTTTGAG
CTGCATTGCGCACCAGCAGAGATGGCTCTCCTGTGGTAATGCCATGCCTG
TGACAGACCACTAAAAAGCTTGTCTGCTGGGCTAGTCTAGTCACTTGCCG
ACAATGCTTCTGTCTTTTCGTTGGCCCTTCATGCACGGGTATTTGGCAGC
TGATGGACCATGACGCAAAGTTGGGTCTCTGCTGCACTGCCCTAGGCAAT
ATCAACATCATAACCTGATCATAAAGCTGCATGACGACAAGCCACTCGCA
AGTAATCCAGGACTGCTTCCTGGAATGCACGCTTTCCATGCTTAGGGTTA
TTCTCATGTTTTCTTCAAGGGTCATGCTGCTGGTCAAGTACTGCCATGCC
GCTGCTACAGTTTGGCAGGTCGGCGCATCATGTAATTGCAATAATCATTA
ATCTTGTACAACGGTCAGTGAGCTTGCCTGTAGCCGTGATCGCCAAGTAC
TGAACCGAACCGAGTTTGCGGTCACCCTTCAGTCCCAACTCCAATCAATA
TGATACGGCGCAGTTCAACTGTCAAAATTGCGGCAACTATGATGCAGAAA
GCACAAGTAACTTACACGACCGTCCACCGTGCTGTAACCACACAACGTTG
ATGTCCTGCATCTGTCTTTTGTTACTCTGTGAATTGCGCATACATGATGT
TGGTTGCTTGGGCATTGCACTTGTGGTCATAATCTTTATTCATGCATCAC
CGAATTGCATTGACGGACCCATAAACAGGCATTGCATCCTCTACTGTACC
TCTATGCAGGTCAATACATGCATTATGATGATCATCATGCTTTGCGCGTG
TTCAATTGTAAGTTTAGATTTCAGTACTCGGGTTTGTTGCAAGCTGCACA
CTATGCCCAAGTTTATTGTGTCTACAGTTGCTTGACATGCTAGCTTATCA
ATGCCTTGCCACACGTTCCTATCCTGCAGCATGATTGATGCCGGCGTGTT
CCCTGTCAACTACTTCACCGCGGGGCAACTTGCACAGTTCCACCCAGAGC
TGTGGGACAAGCTGGCGGAGACACTGGCCTCAGACTAAGCCCTGAATCCA
GCTCTTGCGGTCGGCAGCGCAAATATTTGATCCAGGCCCAGCCAGTCATT
TTTGCTGCTGAGCCTCTACATCGCCTCTTTTTTGCCAATTGGGATACACA
TCATTCATAGAGCTGGACAGCCTCAAGGGCAGCAAGCAGCGAACGCGCAC
ACTGCGCATTGAAAGCGGGCAGTGTGTAGGATTTTGTCACGAGGCGAATG
ATTTGACGTCAGAGATGCCTTGATAAAACTATTCTTTTGTGC

Coding sequence (CDS) from alignment at Contig_72:201993..205884+

>mRNA_13425 ID=mRNA_13425|Name=jgi.p|Trimin1|350782|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=528bp|location=Sequence derived from alignment at Contig_72:201993..205884+ (Tribonema minus UTEX_B_3156 )
ATGAGGACAGGACTCGGGCTCGCGCTTCTCACGGTGGCAGCCAATGTGTG
CCCAGCGTGCTCCTTTCAGGCATGGACACGCTCTGGCGTGGGGCGCGCAG
CTGTTGCATCCTCGGCGAAGTGCAGAACCAGAGCGCTGCTGATGTCGGAG
GCGCCAGCATCGGAAGCTCCAGCAGTGCCTGCAGCGCCAGCCAGTCTGGA
TGTGAAGATTGCAGGCATGCAGGAGACAGCAGGGGGGTTCATTTCGCACC
TGGAAGTGCACATATTCAGGACCGTGACAACACACAAGATCATCATTGCA
AAGGCTAACCTCCAGGACCTGTCGGAGCGTACTGGCAAGCCAGTGGATGT
GGAGCAAGTGCTCAAGCACATTGTGGAGTTTATGGTGGACAAGAAAATGC
CCCTGGACAACACTGAAGGCATGATTGATGCCGGCGTGTTCCCTGTCAAC
TACTTCACCGCGGGGCAACTTGCACAGTTCCACCCAGAGCTGTGGGACAA
GCTGGCGGAGACACTGGCCTCAGACTAA