mRNA_13400 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353045
Unique NamemRNA_13400
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|353045 vs. uniprot
Match: A0A836CKH1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKH1_9STRA)

HSP 1 Score: 638 bits (1645), Expect = 1.550e-231
Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 1
Query:    1 MCFSTLGNVQLVDRQLPEQQQREHGLLQTEQRQQPVEQDTQALAMCAVFKDQNPDIRTWVEYHYRMGFDAFYILDDGSKEPATAELADYIAAGVVHYDLVSRRKLPHPMQKHAYGKCLAEWGSRHTWMAFLDVDEFIVVNDPRNVTLLQLLTTYQQFGGVGLNWIMFGSSGHTERPPDGVSQYTACTPPSFFHNKHIKSVVNIKHTSGRGTSPHHFSYANGYWAVNTDGQKIDGPFNEPPTYGRAHINHYFTKSLAEFQEKIERGAGNGSHKTMQLFHDVNEAATETCPSLQWPPPRSLPAAT 909
            MCFSTLGNVQLVDRQLPEQQQREHGLLQTEQRQQPVEQDTQALAMCAVFKDQNPDIRTWVEYHYRMGFDAFYILDDGSKEPATAELADYIAAGVVHYDLVSRRKLPHPMQKHAYGKCLAEWGSRHTWMAFLDVDEFIVVNDPRNVTLLQLLTTYQQFGGVGLNWIMFGSSGHTERPPDGVSQYTACTPPSFFHNKHIKSVVNIKHTSGRGTSPHHFSYANGYWAVNTDGQKIDGPFNEPPTYGRAHINHYFTKSLAEFQEKIERGAGNGSHKTMQLFHDVNEAATETCPSLQWPPPRSLPAAT
Sbjct:    1 MCFSTLGNVQLVDRQLPEQQQREHGLLQTEQRQQPVEQDTQALAMCAVFKDQNPDIRTWVEYHYRMGFDAFYILDDGSKEPATAELADYIAAGVVHYDLVSRRKLPHPMQKHAYGKCLAEWGSRHTWMAFLDVDEFIVVNDPRNVTLLQLLTTYQQFGGVGLNWIMFGSSGHTERPPDGVSQYTACTPPSFFHNKHIKSVVNIKHTSGRGTSPHHFSYANGYWAVNTDGQKIDGPFNEPPTYGRAHINHYFTKSLAEFQEKIERGAGNGSHKTMQLFHDVNEAATETCPSLQWPPPRSLPAAT 303          
BLAST of jgi.p|Trimin1|353045 vs. uniprot
Match: A0A835Y7V7_9CHLO (Glycosyltransferase family 92 protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835Y7V7_9CHLO)

HSP 1 Score: 191 bits (484), Expect = 2.430e-55
Identity = 100/252 (39.68%), Postives = 144/252 (57.14%), Query Frame = 1
Query:  133 MCAVFKDQNP-DIRTWVEYHYRMGFDAFYILDDGSKEPATAELADYIAAGVVH-YDLVSRRKLPHPMQKHAYG----KCLAEWGSRHTWMAFLDVDEFIVVNDPRNVTLLQLLTTYQQFGGVGLNWIMFGSSGHTERPPDG-VSQYTACTPPSFFHNKHIKSVVNIKHTSGRGTSPHHFSYANGYWAVNTDGQKIDGPFNEPPTYGRAHINHYFTKSLAEFQEKIERGAGNGS-HKTMQLFHDVNEAATETC 864
            MCA  +D+ P ++  WV YH  +G   F + D  S +P    L  Y+  G+V  +   S  +      + ++G    +C+     RHTWMAF+D DE+I V      +L  +L+ Y+ FG +GLNW+MFGSSGH +RP  G +  YT C P +   N H+KS+VN++  +G   SPHHF+ +     VN      +GPF++PP++ R  + HYFT+SL EF+ K  RG  +G   K+M  FH  NEAATETC
Sbjct:    1 MCATIRDEVPSNLVEWVRYHALLGVGRFMLFDHNSSQPVFTSLEPYVRGGLVDVFFHASHHRTGGGFAESSHGFAHEQCIRIGKMRHTWMAFIDADEYIFVRGDDCPSLPSILSEYESFGALGLNWVMFGSSGHVKRPAAGNLMSYTKCLPYNHDVNTHVKSIVNLRFVAGLNWSPHHFTLSQHKEQVNELKVPFEGPFSKPPSHVRIMLYHYFTRSLEEFERKSSRGDASGMVGKSMSNFHFYNEAATETC 252          
BLAST of jgi.p|Trimin1|353045 vs. uniprot
Match: A0A5J4YD35_9CHLO (Glycosyltransferase family 92 protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YD35_9CHLO)

HSP 1 Score: 191 bits (485), Expect = 3.460e-55
Identity = 95/259 (36.68%), Postives = 143/259 (55.21%), Query Frame = 1
Query:  118 TQALAMCAVFKDQNPDIRTWVEYHYRMGFDAFYILDDGSKEPATAELADYIAAGVVHYDLVSRRK---LPHPMQKHAYGKCLAEWGSRHTWMAFLDVDEFIVVNDPRNVTLLQLLTTYQQFGGVGLNWIMFGSSGHTERPPDG-VSQYTACTPPSFFHNKHIKSVVNIKHTSGRGTSPHHFSYANGYWAVNTDGQKIDGPFNEPPTYGRAHINHYFTKSLAEFQEKIERGAGNGSHKTMQLFHDVNEAATETC-PSLQW 879
            +Q  A+C   KDQ+ DI  W+EYH ++G    Y+ DD S  P   +L  YI +G+V Y  + +     +  P Q + Y +C+  + S H ++AF+DVDEF+ + D +   +  LL  Y+++GG+ +NW+ FGSSGH  RP  G ++ +  C P     N HIK++ N  +       PHHFSY  G  AVN     ++G         R  + HY TKSL E+Q KI+RG+   + KTM+ F +V + A E C  ++QW
Sbjct:   52 SQYFAICVSAKDQHEDISEWIEYHEQLGAGKIYLYDDSSSPPMLGQLKSYIQSGLVEYHFIGQSNHSSIARP-QLYVYDQCITRYRSLHQFIAFIDVDEFLFLRDLKVADMPALLHDYEEYGGLAVNWVQFGSSGHVHRPRGGTLANFWKCVPLQHPENLHIKTIANTLYVDRAAGDPHHFSYLQGKVAVNEKYMPVEGSRTVTNEISRVALYHYVTKSLDEYQSKIDRGSAMKNFKTMEFFDNVEKEAVEECREAMQW 309          
BLAST of jgi.p|Trimin1|353045 vs. uniprot
Match: E1Z8A1_CHLVA (Glycosyltransferase family 92 protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z8A1_CHLVA)

HSP 1 Score: 185 bits (469), Expect = 1.510e-52
Identity = 96/261 (36.78%), Postives = 145/261 (55.56%), Query Frame = 1
Query:  127 LAMCAVFKDQNPDIRTWVEYHYRMGFDAFYILDDGSKEPATAELADYIAAGVVHY--------------DLVSRRKLPHPMQKHAYGKCLAEWGSRHTWMAFLDVDEFIVVNDPRNVTLLQLLTTYQQFGGVGLNWIMFGSSGHTERPPDGVSQYTACTPPSFFHNKHIKSVVNIKHTSGRGTSPHHFSYANGYWAVNTDGQKIDGPFNEPPTYGRAHINHYFTKSLAEFQEKIERGAGNGSHKTMQLF-HDVNEAATETC 864
            LA+C   ++Q+ ++  W++YH R+G    Y++DD S+ P    LA YI  G+V +              D        H  Q   Y  CL ++G+RH WMAF+D+DEF V  D  +  L  LL  ++++GGVG+NW  FGSSGH +R  + ++ YT C   +   ++HIKSVV  + T+ R   PHH ++A GY+AV T G +++G F + PTY R  ++HY  KS  +F+EK+ RG   G     + F   +   A +TC
Sbjct:   49 LAICLAARNQHAELPEWLDYHRRLGVSHVYVMDDASQPPLGEVLAPYIEEGLVTHRYLEDYAAIQQELKDTTCHDPQAHHRQMMMYALCLRDYGARHQWMAFIDIDEFFVFTDGTD-DLPALLRGFEEYGGVGVNWRFFGSSGHKKRQANTLTAYTQCYAGNEEVHRHIKSVVQPRFTA-RMEGPHHGAFAPGYFAVTTSGSRVEGAFAKKPTYKRLALHHYVVKSREDFEEKMARGNVMGEESRQESFWQQIESQAVKTC 307          
BLAST of jgi.p|Trimin1|353045 vs. uniprot
Match: A0A2V0PM01_9CHLO (Glycosyltransferase family 92 protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PM01_9CHLO)

HSP 1 Score: 186 bits (472), Expect = 1.360e-51
Identity = 96/254 (37.80%), Postives = 137/254 (53.94%), Query Frame = 1
Query:  130 AMCAVFKDQN-PDIRTWVEYHYRMGFDAFYILDDGSKEPATAELADYIAAGVVHYDLVSRRKLPHPM-----QKHAYGKCLAEWGSRHTWMAFLDVDEFIVV-NDPRNVTLLQLLTTYQQFGGVGLNWIMFGSSGHTERPPDGVS-QYTACTPPSFFHNKHIKSVVNIKHTSGRGTSPHHFSY-ANGYWAVNTDGQKIDGPFNEPPTYGRAHINHYFTKSLAEFQEKIERGAGNGSHKTMQLFHDVNEAATETC 864
            A+C+V K+QN  D+R W+EYH  +G    YI D+ S EP    + DY+ +G+V Y     R     +     Q  AY  C   + +RH W+AF+D DEFI++ N+ R   + + LT Y Q+GG+ +NW++FGSSGH  RP  GV   Y AC P     N H+K + N +H    G  PH   Y       VN  G ++ GP  E P++ +  + HY TKS  EF+ K+ RG+  G+ K M  F  + + A  TC
Sbjct:  162 AVCSVIKNQNGADLREWIEYHRYIGTRKIYIYDNNSTEPLADHIRDYLHSGLVEYTYFVGRHRYRDLFRTTSQWWAYNDCATRFATRHRWLAFIDGDEFIMLRNESRTDNIEEFLTDYDQYGGLAVNWMIFGSSGHLVRPHGGVLVNYRACLPSDQVENTHVKIIANTRHLLTAGDDPHSVFYRTRDKHTVNEMGARVKGPKTEAPSHRKIALYHYLTKSRGEFEAKVRRGSAAGNFKNMGFFQAIEDLANATC 415          
BLAST of jgi.p|Trimin1|353045 vs. uniprot
Match: A0A835Y659_9CHLO (Glycosyltransferase family 92 protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835Y659_9CHLO)

HSP 1 Score: 179 bits (453), Expect = 4.080e-51
Identity = 95/254 (37.40%), Postives = 139/254 (54.72%), Query Frame = 1
Query:  133 MCAVFKDQNP-DIRTWVEYHYRMGFDAFYILDDGSKEPATAELADYIAAGVVH-YDLVSRRKLPHPMQKHAYG----KCLAEWGSRHTWMAFLDVDEFIVVNDPRNVTLLQLLTTYQQFGGVGLNWIMFGSSGHTERPPDG-VSQYTACTPPSFFHNKHIKSVVNIKHTSGRGTSPHHFSYANGYWAVNTDGQKIDGPFNEPPTYGRAHINHYFTKSLAEFQEKIERGAGNG-SHKTMQLFHDVNEAATETCPS 870
            MCA  +D+ P ++  WV YH  +G   F + D  S +P    L  Y+  G+V  +   S  +      + ++G    +C+     RHTWMAF+D DE+I V      +L  +L+ Y+ FG +GLNW+MFGSSGH +RP  G +  YT C P +   N H+KS+VN++  +G   SPHHF+ +     VN      +GPF++PP++ R  + HYFT+SL EF+ K  RG  +G  H T +       AA   CPS
Sbjct:    1 MCATIRDEVPSNLVEWVRYHALLGVGRFMLFDHNSSQPVFTSLEPYVRGGLVDVFFHASHHRTGGGFAESSHGFAHEQCIRIGKMRHTWMAFIDADEYIFVRGDDCPSLPSILSEYESFGALGLNWVMFGSSGHVKRPAAGNLMSYTKCLPYNHDVNTHVKSIVNLRFVAGLNWSPHHFTLSQHKEQVNELKVPFEGPFSKPPSHVRIMLYHYFTRSLEEFERKSSRGDASGMKHVTRRSVSGPAAAAAAACPS 254          
BLAST of jgi.p|Trimin1|353045 vs. uniprot
Match: A0A059LNK4_9CHLO (Glycosyltransferase family 92 protein n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LNK4_9CHLO)

HSP 1 Score: 180 bits (457), Expect = 1.070e-50
Identity = 101/262 (38.55%), Postives = 137/262 (52.29%), Query Frame = 1
Query:  112 QDTQALAMCAVFKDQNPDIRTWVEYHYRMGFDAFYILDDGSKEPATAELADYIAAGVVHYDLVSRRKLPHP-------MQKHAYGKCLAEWGSRHTWMAFLDVDEFIVVNDPRNVT--LLQLLTTYQQFGGVGLNWIMFGSSGHTERPPDG-VSQYTACTPPSFFHNKHIKSVVNIKHTSGRGTSPHHFSYANGYWAVNTDGQKIDGPFNEPPTYGRAHINHYFTKSLAEFQEKIERGAGNGSHKTMQLFHDVNEAATETCP 867
            +D   +A C   KD++ D+R W++YH  +G   FY+ +  + E +   L D I  GVV Y       LPH        MQ   Y  CL     RH WMAF+DVDEF+V   P N T  L  +L  Y    G+ +NW + GS GH  RP +G ++ Y +CTP SF  N H+KS+VN +  +   T PHHF Y  G  A  T    +DGP      Y +  + HY  KS  E++ K+ RG+  G++K M  F  V+ AATE CP
Sbjct:   80 EDGSYVAACVAVKDRSDDLREWIDYHRALGVGHFYVFETDTAEASDWALEDLIQEGVVDYYY-----LPHVTPTTVPMMQIRIYRLCLQHTRHRHAWMAFVDVDEFLV---PTNATQGLKGVLEEYADVPGLVVNWRLMGSGGHEGRPAEGTLAAYQSCTPVSFHDNLHVKSIVNTRLVANTSTDPHHFEYLGGATAFTTARDPVDGPAAPAVHYEKLALFHYALKSREEYELKMLRGSAMGNYKGMDFFDRVDAAATEQCP 333          
BLAST of jgi.p|Trimin1|353045 vs. uniprot
Match: A0A7J7PLB3_9CHLO (Glycosyltransferase family 92 protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PLB3_9CHLO)

HSP 1 Score: 179 bits (454), Expect = 2.180e-50
Identity = 94/274 (34.31%), Postives = 145/274 (52.92%), Query Frame = 1
Query:   70 HGLLQTEQRQQPVEQDTQALAMCAVFKDQNPDIRTWVEYHYRMGFDAFYILDDGSKEPATAELADYIAAGVVHYDLVS-----RRKLPHPMQKHAYGKCLAEWGSRHTWMAFLDVDEFIVVNDPRNV-TLLQLLTTYQQFGGVGLNWIMFGSSGHTERPPDGVS-QYTACTPPSFFHNKHIKSVVNIKHTSGRGTSPHHFSYAN--GYWAVNTDGQKIDGPFNEPPTYGRAHINHYFTKSLAEFQEKIERGAGNGSHKTMQLFHDVNEAATETC 864
            HG+L+   R+ P +     +A+CA+ K+Q+ D+R W+EYH  +G    Y+ D+ S  P   ++ D + +G V Y   +     R       Q  AY  C+  +  RH W+AF+D DEFIV+        +   +  Y Q+GG+ LNW++FGSSGH +RP  GV   Y  C P     N+H+K + N  H    G +PH   Y +   +  VN  G  + GP   PP++ +  + HY TKS  E+ +K+ RG+  G++K+ + F  +N  ATE C
Sbjct:   26 HGILKIPDRKDPKQYPDGFVAICAIVKNQHQDLREWLEYHKWLGVSKVYVYDNNSTVPLLPDIIDMVQSGYVEYSYFTGTPRYRDLFRTSSQWWAYNDCVTRFKHRHRWLAFVDADEFIVLQGAAGADNINDFMRGYDQYGGLALNWVVFGSSGHKQRPQGGVLVNYRQCLPLQQEQNQHVKVIANTAHLMTIGDNPHRVYYNDMKRFGTVNELGAPVPGP-KSPPSHTKVALYHYLTKSEDEYMQKMRRGSAAGNYKSPEFFTAINGLATERC 298          
BLAST of jgi.p|Trimin1|353045 vs. uniprot
Match: A0A383WJP7_TETOB (Glycosyltransferase family 92 protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WJP7_TETOB)

HSP 1 Score: 184 bits (467), Expect = 2.250e-50
Identity = 97/274 (35.40%), Postives = 145/274 (52.92%), Query Frame = 1
Query:   70 HGLLQTEQRQQPVEQDTQALAMCAVFKDQNPDIRTWVEYHYRMGFDAFYILDDGSKEPATAELADYIAAGVVHYDLVS-----RRKLPHPMQKHAYGKCLAEWGSRHTWMAFLDVDEFIVVNDPRNVTLLQ-LLTTYQQFGGVGLNWIMFGSSGHTERPPDGVS-QYTACTPPSFFHNKHIKSVVNIKHTSGRGTSPHHFSYAN--GYWAVNTDGQKIDGPFNEPPTYGRAHINHYFTKSLAEFQEKIERGAGNGSHKTMQLFHDVNEAATETC 864
            HG+L+   R+ P +     +A+CA+ K+Q+ D+R W+EYH  +G    Y+ D+ S  P   ++ D + AG V Y   +     R       Q  AY  C+  +  RH W+AF+D DEFIV++D      +   +  Y Q+GG+ LNW++FGSSGH +RP  GV   Y  C P     N+H+K + N  H    G  PH   Y +   Y  VN  G  + GP   PP++ +  + HY TKS  E+ +K+ RG+  G++K  + F  +N  ATE C
Sbjct:  212 HGILKIPDRKDPKQYPDGYVAICAIVKNQHQDLREWLEYHKWIGVGKVYVYDNNSTVPLLPDIIDMVQAGFVEYSYFTGMPRYRDLFRTSSQWWAYNDCVTRFRHRHRWLAFIDADEFIVLHDAAGTNNINDFMRGYDQYGGLALNWVVFGSSGHKQRPHGGVLVNYRQCLPLQQEQNQHVKVIANTAHLMTVGDDPHRVYYHDMKRYSTVNELGVPVPGP-KSPPSHSKVALYHYLTKSEGEYMQKMRRGSAAGNYKAPEFFTAINGLATERC 484          
BLAST of jgi.p|Trimin1|353045 vs. uniprot
Match: A0A059LLJ4_9CHLO (Glycosyltransferase family 92 protein n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LLJ4_9CHLO)

HSP 1 Score: 180 bits (456), Expect = 2.930e-50
Identity = 97/258 (37.60%), Postives = 136/258 (52.71%), Query Frame = 1
Query:  109 EQDTQALAMCAVFKDQNPDIRTWVEYHYRMGFDAFYILDDGSKEPATAELADYIAAGVVHYDL---VSRRKLPHPMQKHAYGKCLAEWGSRHTWMAFLDVDEFIVVND--PRNVTLLQLLTTYQQFGGVGLNWIMFGSSGHTERP-PDGVSQYTACTPPSFFHNKHIKSVVNIKHTSGRGTSPHHFSYANGYWAVNTDGQKIDGPFNEPPTYGRAHINHYFTKSLAEFQEKIERGAGNGSHKTMQLFHDVNEAATETC 864
            E D   + +C+  KDQ+ D+R W+ YH  +G + FY+ D GS  P    L D+I +G+VHY        R   H  Q   Y +CL      H WMAF+DVDEF+V+ D  P   TLL+    ++  G + LNW++FGSSG  ++P  + ++ Y  C P     N H+KSVV     +   T PHHF Y   Y A +  G+ + GP +      R  ++HY  KS  EF  K+ RG+G G+ KTM  FH V+   T  C
Sbjct:  105 ESDAAFVTICSAVKDQHADVREWIVYHRAIGVERFYLHDTGSVPPMDTVLPDFIESGLVHYRYDAATPHRAGTHGPQITVYERCLESGRVAHPWMAFIDVDEFVVLRDATPDFPTLLR---EFEDAGALVLNWVVFGSSGLEKKPRTNTLASYWQCAPDGHPENLHVKSVVRPARVNDTRTDPHHFKYRAPYVAKSAGGETVAGPKSSRQATARVALHHYAIKSREEFGAKMARGSGMGNQKTMAFFHYVDNYTTANC 359          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353045 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CKH1_9STRA1.550e-231100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Y7V7_9CHLO2.430e-5539.68Glycosyltransferase family 92 protein n=1 Tax=Edap... [more]
A0A5J4YD35_9CHLO3.460e-5536.68Glycosyltransferase family 92 protein n=1 Tax=Treb... [more]
E1Z8A1_CHLVA1.510e-5236.78Glycosyltransferase family 92 protein n=1 Tax=Chlo... [more]
A0A2V0PM01_9CHLO1.360e-5137.80Glycosyltransferase family 92 protein n=1 Tax=Raph... [more]
A0A835Y659_9CHLO4.080e-5137.40Glycosyltransferase family 92 protein n=1 Tax=Edap... [more]
A0A059LNK4_9CHLO1.070e-5038.55Glycosyltransferase family 92 protein n=1 Tax=Heli... [more]
A0A7J7PLB3_9CHLO2.180e-5034.31Glycosyltransferase family 92 protein n=1 Tax=Scen... [more]
A0A383WJP7_TETOB2.250e-5035.40Glycosyltransferase family 92 protein n=1 Tax=Tetr... [more]
A0A059LLJ4_9CHLO2.930e-5037.60Glycosyltransferase family 92 protein n=1 Tax=Heli... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_141contigContig_141:319687..321203 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353045|estExt_Genemark1.C_Ctg_1410053
DescriptionGlycosyl transferase family 2
COG categoryO
Max annot lvl33090|Viridiplantae
EggNOG OGsCOG2802@1|root,KOG4159@2759|Eukaryota,389UX@33090|Viridiplantae
Evalue5.26e-66
Seed ortholog248742.XP_005645894.1
Hectar predicted targeting categoryother localisation
TranscriptId353367
TrackFilteredModels1
ProteinId353045
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353045gene_13400Tribonema minus UTEX_B_3156 geneContig_141 319687..321203 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13400_1exon_13400_1Tribonema minus UTEX_B_3156 exonContig_141 319687..319728 +
exon_13400_2exon_13400_2Tribonema minus UTEX_B_3156 exonContig_141 320307..321203 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13400CDS_13400Tribonema minus UTEX_B_3156 CDSContig_141 319687..319728 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_13400UTR3_13400Tribonema minus UTEX_B_3156 three_prime_UTRContig_141 321177..321203 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353045Trimin1|353045|estExt_Genemark1.C_Ctg_1410053Tribonema minus UTEX_B_3156 polypeptideContig_141 319687..321176 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13400 ID=mRNA_13400|Name=jgi.p|Trimin1|353045|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=939bp|location=Sequence derived from alignment at Contig_141:319687..321203+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCTTTTCGACGCTGGGCAACGTCCAGTTGGTGGATCGGCAACTTCC
AGAGCAGCAGCAGCGCGAGCACGGACTCCTGCAAACGGAGCAGCGCCAGC
AGCCAGTGGAGCAGGACACCCAGGCGTTGGCGATGTGCGCTGTATTCAAG
GATCAAAATCCGGACATACGGACCTGGGTGGAGTACCACTACCGCATGGG
CTTCGACGCATTCTACATCTTAGATGATGGCAGCAAAGAGCCGGCTACAG
CAGAGCTAGCAGATTACATCGCAGCAGGCGTCGTTCACTACGACTTGGTC
TCTCGACGGAAGCTGCCGCACCCCATGCAGAAGCATGCCTATGGTAAGTG
CCTGGCAGAGTGGGGGTCCCGCCATACATGGATGGCGTTCCTGGACGTTG
ATGAGTTCATTGTTGTCAACGACCCGCGCAACGTCACTCTGTTGCAACTG
CTGACTACCTACCAGCAGTTTGGGGGTGTGGGCCTGAACTGGATAATGTT
CGGATCGTCGGGCCACACTGAGAGGCCGCCAGACGGGGTATCCCAGTACA
CTGCCTGCACTCCGCCGTCCTTCTTTCACAACAAACATATCAAGAGCGTA
GTCAACATAAAGCACACAAGCGGGCGCGGCACGTCCCCGCACCACTTCTC
GTACGCCAACGGGTACTGGGCTGTAAATACCGATGGACAGAAGATTGACG
GGCCGTTCAATGAGCCCCCCACGTACGGTCGCGCGCACATCAACCACTAC
TTCACCAAGAGCCTGGCAGAGTTCCAAGAGAAGATAGAACGCGGCGCGGG
CAACGGCTCGCACAAAACCATGCAGCTGTTTCATGATGTCAACGAAGCTG
CGACAGAGACGTGCCCGTCATTGCAGTGGCCACCACCACGGTCTCTGCCT
GCCGCCACGTAACCGCATTTATATACAGCTGTTCTGTAA
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protein sequence of jgi.p|Trimin1|353045

>Trimin1|353045|estExt_Genemark1.C_Ctg_1410053 ID=Trimin1|353045|estExt_Genemark1.C_Ctg_1410053|Name=jgi.p|Trimin1|353045|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=304bp
MCFSTLGNVQLVDRQLPEQQQREHGLLQTEQRQQPVEQDTQALAMCAVFK
DQNPDIRTWVEYHYRMGFDAFYILDDGSKEPATAELADYIAAGVVHYDLV
SRRKLPHPMQKHAYGKCLAEWGSRHTWMAFLDVDEFIVVNDPRNVTLLQL
LTTYQQFGGVGLNWIMFGSSGHTERPPDGVSQYTACTPPSFFHNKHIKSV
VNIKHTSGRGTSPHHFSYANGYWAVNTDGQKIDGPFNEPPTYGRAHINHY
FTKSLAEFQEKIERGAGNGSHKTMQLFHDVNEAATETCPSLQWPPPRSLP
AAT*
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mRNA from alignment at Contig_141:319687..321203+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13400 ID=mRNA_13400|Name=jgi.p|Trimin1|353045|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1517bp|location=Sequence derived from alignment at Contig_141:319687..321203+ (Tribonema minus UTEX_B_3156 )
ATGTGCTTTTCGACGCTGGGCAACGTCCAGTTGGTGGATCGGGTGAGGCC GAATGCCAGGATAGCATACCGCCTGCCTTCTTGGCGTTGAGGTGGCTGTA ATTCCTGCGGCTGCAGGTCGGTCAAAAAGCTTTGCTCAGCGCCTTTGGTT TCCTTCTGGAGAAGCAGTAGGGCAAGCACCACGATGATGCCGACTTGAAC AGCTAGAAGCACGCGAACCCCCCCAGTACCACAGCGCTCTCCGCATTGGA CCATGCGTTACCGTGCCCAAGCCGGAATCGACCTGTGCTGCCTGCTTCCG CACATCGAAGGCACAAGGGTGTCGCTGTAACACCAGCACACACTTTCAGT GCTTCAAAAGGGAAACCTCAAATTGAAGTTGCCGGAAGATAACCTCGCGA GATTACATAGAGAGTTCCGCCCGCAGTGAAAGTGAGCAGGCAAAAGAATC AGGATCACTGTTGAGCTGGCTGGCTAACACAGCAGAGTGGCCGCAACGCG GTGGGCATGTTTCGTGCCAGACCAAGAGGCATCGCAGCTCTTGTTGCCGT GGTGGCACTCGCTAGCGGGGCTGTCTGGTGGACTTACGTGCAGCAGATCC CATATCGCGGTCAACCGCAGCAACTTCCAGAGCAGCAGCAGCGCGAGCAC GGACTCCTGCAAACGGAGCAGCGCCAGCAGCCAGTGGAGCAGGACACCCA GGCGTTGGCGATGTGCGCTGTATTCAAGGATCAAAATCCGGACATACGGA CCTGGGTGGAGTACCACTACCGCATGGGCTTCGACGCATTCTACATCTTA GATGATGGCAGCAAAGAGCCGGCTACAGCAGAGCTAGCAGATTACATCGC AGCAGGCGTCGTTCACTACGACTTGGTCTCTCGACGGAAGCTGCCGCACC CCATGCAGAAGCATGCCTATGGTAAGTGCCTGGCAGAGTGGGGGTCCCGC CATACATGGATGGCGTTCCTGGACGTTGATGAGTTCATTGTTGTCAACGA CCCGCGCAACGTCACTCTGTTGCAACTGCTGACTACCTACCAGCAGTTTG GGGGTGTGGGCCTGAACTGGATAATGTTCGGATCGTCGGGCCACACTGAG AGGCCGCCAGACGGGGTATCCCAGTACACTGCCTGCACTCCGCCGTCCTT CTTTCACAACAAACATATCAAGAGCGTAGTCAACATAAAGCACACAAGCG GGCGCGGCACGTCCCCGCACCACTTCTCGTACGCCAACGGGTACTGGGCT GTAAATACCGATGGACAGAAGATTGACGGGCCGTTCAATGAGCCCCCCAC GTACGGTCGCGCGCACATCAACCACTACTTCACCAAGAGCCTGGCAGAGT TCCAAGAGAAGATAGAACGCGGCGCGGGCAACGGCTCGCACAAAACCATG CAGCTGTTTCATGATGTCAACGAAGCTGCGACAGAGACGTGCCCGTCATT GCAGTGGCCACCACCACGGTCTCTGCCTGCCGCCACGTAACCGCATTTAT ATACAGCTGTTCTGTAA
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Coding sequence (CDS) from alignment at Contig_141:319687..321203+

>mRNA_13400 ID=mRNA_13400|Name=jgi.p|Trimin1|353045|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=912bp|location=Sequence derived from alignment at Contig_141:319687..321203+ (Tribonema minus UTEX_B_3156 )
ATGTGCTTTTCGACGCTGGGCAACGTCCAGTTGGTGGATCGGCAACTTCC
AGAGCAGCAGCAGCGCGAGCACGGACTCCTGCAAACGGAGCAGCGCCAGC
AGCCAGTGGAGCAGGACACCCAGGCGTTGGCGATGTGCGCTGTATTCAAG
GATCAAAATCCGGACATACGGACCTGGGTGGAGTACCACTACCGCATGGG
CTTCGACGCATTCTACATCTTAGATGATGGCAGCAAAGAGCCGGCTACAG
CAGAGCTAGCAGATTACATCGCAGCAGGCGTCGTTCACTACGACTTGGTC
TCTCGACGGAAGCTGCCGCACCCCATGCAGAAGCATGCCTATGGTAAGTG
CCTGGCAGAGTGGGGGTCCCGCCATACATGGATGGCGTTCCTGGACGTTG
ATGAGTTCATTGTTGTCAACGACCCGCGCAACGTCACTCTGTTGCAACTG
CTGACTACCTACCAGCAGTTTGGGGGTGTGGGCCTGAACTGGATAATGTT
CGGATCGTCGGGCCACACTGAGAGGCCGCCAGACGGGGTATCCCAGTACA
CTGCCTGCACTCCGCCGTCCTTCTTTCACAACAAACATATCAAGAGCGTA
GTCAACATAAAGCACACAAGCGGGCGCGGCACGTCCCCGCACCACTTCTC
GTACGCCAACGGGTACTGGGCTGTAAATACCGATGGACAGAAGATTGACG
GGCCGTTCAATGAGCCCCCCACGTACGGTCGCGCGCACATCAACCACTAC
TTCACCAAGAGCCTGGCAGAGTTCCAAGAGAAGATAGAACGCGGCGCGGG
CAACGGCTCGCACAAAACCATGCAGCTGTTTCATGATGTCAACGAAGCTG
CGACAGAGACGTGCCCGTCATTGCAGTGGCCACCACCACGGTCTCTGCCT
GCCGCCACGTAA
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