mRNA_13400 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|353045 vs. uniprot
Match: A0A836CKH1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKH1_9STRA) HSP 1 Score: 638 bits (1645), Expect = 1.550e-231 Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 1 Query: 1 MCFSTLGNVQLVDRQLPEQQQREHGLLQTEQRQQPVEQDTQALAMCAVFKDQNPDIRTWVEYHYRMGFDAFYILDDGSKEPATAELADYIAAGVVHYDLVSRRKLPHPMQKHAYGKCLAEWGSRHTWMAFLDVDEFIVVNDPRNVTLLQLLTTYQQFGGVGLNWIMFGSSGHTERPPDGVSQYTACTPPSFFHNKHIKSVVNIKHTSGRGTSPHHFSYANGYWAVNTDGQKIDGPFNEPPTYGRAHINHYFTKSLAEFQEKIERGAGNGSHKTMQLFHDVNEAATETCPSLQWPPPRSLPAAT 909 MCFSTLGNVQLVDRQLPEQQQREHGLLQTEQRQQPVEQDTQALAMCAVFKDQNPDIRTWVEYHYRMGFDAFYILDDGSKEPATAELADYIAAGVVHYDLVSRRKLPHPMQKHAYGKCLAEWGSRHTWMAFLDVDEFIVVNDPRNVTLLQLLTTYQQFGGVGLNWIMFGSSGHTERPPDGVSQYTACTPPSFFHNKHIKSVVNIKHTSGRGTSPHHFSYANGYWAVNTDGQKIDGPFNEPPTYGRAHINHYFTKSLAEFQEKIERGAGNGSHKTMQLFHDVNEAATETCPSLQWPPPRSLPAAT Sbjct: 1 MCFSTLGNVQLVDRQLPEQQQREHGLLQTEQRQQPVEQDTQALAMCAVFKDQNPDIRTWVEYHYRMGFDAFYILDDGSKEPATAELADYIAAGVVHYDLVSRRKLPHPMQKHAYGKCLAEWGSRHTWMAFLDVDEFIVVNDPRNVTLLQLLTTYQQFGGVGLNWIMFGSSGHTERPPDGVSQYTACTPPSFFHNKHIKSVVNIKHTSGRGTSPHHFSYANGYWAVNTDGQKIDGPFNEPPTYGRAHINHYFTKSLAEFQEKIERGAGNGSHKTMQLFHDVNEAATETCPSLQWPPPRSLPAAT 303
BLAST of jgi.p|Trimin1|353045 vs. uniprot
Match: A0A835Y7V7_9CHLO (Glycosyltransferase family 92 protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835Y7V7_9CHLO) HSP 1 Score: 191 bits (484), Expect = 2.430e-55 Identity = 100/252 (39.68%), Postives = 144/252 (57.14%), Query Frame = 1 Query: 133 MCAVFKDQNP-DIRTWVEYHYRMGFDAFYILDDGSKEPATAELADYIAAGVVH-YDLVSRRKLPHPMQKHAYG----KCLAEWGSRHTWMAFLDVDEFIVVNDPRNVTLLQLLTTYQQFGGVGLNWIMFGSSGHTERPPDG-VSQYTACTPPSFFHNKHIKSVVNIKHTSGRGTSPHHFSYANGYWAVNTDGQKIDGPFNEPPTYGRAHINHYFTKSLAEFQEKIERGAGNGS-HKTMQLFHDVNEAATETC 864 MCA +D+ P ++ WV YH +G F + D S +P L Y+ G+V + S + + ++G +C+ RHTWMAF+D DE+I V +L +L+ Y+ FG +GLNW+MFGSSGH +RP G + YT C P + N H+KS+VN++ +G SPHHF+ + VN +GPF++PP++ R + HYFT+SL EF+ K RG +G K+M FH NEAATETC Sbjct: 1 MCATIRDEVPSNLVEWVRYHALLGVGRFMLFDHNSSQPVFTSLEPYVRGGLVDVFFHASHHRTGGGFAESSHGFAHEQCIRIGKMRHTWMAFIDADEYIFVRGDDCPSLPSILSEYESFGALGLNWVMFGSSGHVKRPAAGNLMSYTKCLPYNHDVNTHVKSIVNLRFVAGLNWSPHHFTLSQHKEQVNELKVPFEGPFSKPPSHVRIMLYHYFTRSLEEFERKSSRGDASGMVGKSMSNFHFYNEAATETC 252
BLAST of jgi.p|Trimin1|353045 vs. uniprot
Match: A0A5J4YD35_9CHLO (Glycosyltransferase family 92 protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YD35_9CHLO) HSP 1 Score: 191 bits (485), Expect = 3.460e-55 Identity = 95/259 (36.68%), Postives = 143/259 (55.21%), Query Frame = 1 Query: 118 TQALAMCAVFKDQNPDIRTWVEYHYRMGFDAFYILDDGSKEPATAELADYIAAGVVHYDLVSRRK---LPHPMQKHAYGKCLAEWGSRHTWMAFLDVDEFIVVNDPRNVTLLQLLTTYQQFGGVGLNWIMFGSSGHTERPPDG-VSQYTACTPPSFFHNKHIKSVVNIKHTSGRGTSPHHFSYANGYWAVNTDGQKIDGPFNEPPTYGRAHINHYFTKSLAEFQEKIERGAGNGSHKTMQLFHDVNEAATETC-PSLQW 879 +Q A+C KDQ+ DI W+EYH ++G Y+ DD S P +L YI +G+V Y + + + P Q + Y +C+ + S H ++AF+DVDEF+ + D + + LL Y+++GG+ +NW+ FGSSGH RP G ++ + C P N HIK++ N + PHHFSY G AVN ++G R + HY TKSL E+Q KI+RG+ + KTM+ F +V + A E C ++QW Sbjct: 52 SQYFAICVSAKDQHEDISEWIEYHEQLGAGKIYLYDDSSSPPMLGQLKSYIQSGLVEYHFIGQSNHSSIARP-QLYVYDQCITRYRSLHQFIAFIDVDEFLFLRDLKVADMPALLHDYEEYGGLAVNWVQFGSSGHVHRPRGGTLANFWKCVPLQHPENLHIKTIANTLYVDRAAGDPHHFSYLQGKVAVNEKYMPVEGSRTVTNEISRVALYHYVTKSLDEYQSKIDRGSAMKNFKTMEFFDNVEKEAVEECREAMQW 309
BLAST of jgi.p|Trimin1|353045 vs. uniprot
Match: E1Z8A1_CHLVA (Glycosyltransferase family 92 protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z8A1_CHLVA) HSP 1 Score: 185 bits (469), Expect = 1.510e-52 Identity = 96/261 (36.78%), Postives = 145/261 (55.56%), Query Frame = 1 Query: 127 LAMCAVFKDQNPDIRTWVEYHYRMGFDAFYILDDGSKEPATAELADYIAAGVVHY--------------DLVSRRKLPHPMQKHAYGKCLAEWGSRHTWMAFLDVDEFIVVNDPRNVTLLQLLTTYQQFGGVGLNWIMFGSSGHTERPPDGVSQYTACTPPSFFHNKHIKSVVNIKHTSGRGTSPHHFSYANGYWAVNTDGQKIDGPFNEPPTYGRAHINHYFTKSLAEFQEKIERGAGNGSHKTMQLF-HDVNEAATETC 864 LA+C ++Q+ ++ W++YH R+G Y++DD S+ P LA YI G+V + D H Q Y CL ++G+RH WMAF+D+DEF V D + L LL ++++GGVG+NW FGSSGH +R + ++ YT C + ++HIKSVV + T+ R PHH ++A GY+AV T G +++G F + PTY R ++HY KS +F+EK+ RG G + F + A +TC Sbjct: 49 LAICLAARNQHAELPEWLDYHRRLGVSHVYVMDDASQPPLGEVLAPYIEEGLVTHRYLEDYAAIQQELKDTTCHDPQAHHRQMMMYALCLRDYGARHQWMAFIDIDEFFVFTDGTD-DLPALLRGFEEYGGVGVNWRFFGSSGHKKRQANTLTAYTQCYAGNEEVHRHIKSVVQPRFTA-RMEGPHHGAFAPGYFAVTTSGSRVEGAFAKKPTYKRLALHHYVVKSREDFEEKMARGNVMGEESRQESFWQQIESQAVKTC 307
BLAST of jgi.p|Trimin1|353045 vs. uniprot
Match: A0A2V0PM01_9CHLO (Glycosyltransferase family 92 protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PM01_9CHLO) HSP 1 Score: 186 bits (472), Expect = 1.360e-51 Identity = 96/254 (37.80%), Postives = 137/254 (53.94%), Query Frame = 1 Query: 130 AMCAVFKDQN-PDIRTWVEYHYRMGFDAFYILDDGSKEPATAELADYIAAGVVHYDLVSRRKLPHPM-----QKHAYGKCLAEWGSRHTWMAFLDVDEFIVV-NDPRNVTLLQLLTTYQQFGGVGLNWIMFGSSGHTERPPDGVS-QYTACTPPSFFHNKHIKSVVNIKHTSGRGTSPHHFSY-ANGYWAVNTDGQKIDGPFNEPPTYGRAHINHYFTKSLAEFQEKIERGAGNGSHKTMQLFHDVNEAATETC 864 A+C+V K+QN D+R W+EYH +G YI D+ S EP + DY+ +G+V Y R + Q AY C + +RH W+AF+D DEFI++ N+ R + + LT Y Q+GG+ +NW++FGSSGH RP GV Y AC P N H+K + N +H G PH Y VN G ++ GP E P++ + + HY TKS EF+ K+ RG+ G+ K M F + + A TC Sbjct: 162 AVCSVIKNQNGADLREWIEYHRYIGTRKIYIYDNNSTEPLADHIRDYLHSGLVEYTYFVGRHRYRDLFRTTSQWWAYNDCATRFATRHRWLAFIDGDEFIMLRNESRTDNIEEFLTDYDQYGGLAVNWMIFGSSGHLVRPHGGVLVNYRACLPSDQVENTHVKIIANTRHLLTAGDDPHSVFYRTRDKHTVNEMGARVKGPKTEAPSHRKIALYHYLTKSRGEFEAKVRRGSAAGNFKNMGFFQAIEDLANATC 415
BLAST of jgi.p|Trimin1|353045 vs. uniprot
Match: A0A835Y659_9CHLO (Glycosyltransferase family 92 protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835Y659_9CHLO) HSP 1 Score: 179 bits (453), Expect = 4.080e-51 Identity = 95/254 (37.40%), Postives = 139/254 (54.72%), Query Frame = 1 Query: 133 MCAVFKDQNP-DIRTWVEYHYRMGFDAFYILDDGSKEPATAELADYIAAGVVH-YDLVSRRKLPHPMQKHAYG----KCLAEWGSRHTWMAFLDVDEFIVVNDPRNVTLLQLLTTYQQFGGVGLNWIMFGSSGHTERPPDG-VSQYTACTPPSFFHNKHIKSVVNIKHTSGRGTSPHHFSYANGYWAVNTDGQKIDGPFNEPPTYGRAHINHYFTKSLAEFQEKIERGAGNG-SHKTMQLFHDVNEAATETCPS 870 MCA +D+ P ++ WV YH +G F + D S +P L Y+ G+V + S + + ++G +C+ RHTWMAF+D DE+I V +L +L+ Y+ FG +GLNW+MFGSSGH +RP G + YT C P + N H+KS+VN++ +G SPHHF+ + VN +GPF++PP++ R + HYFT+SL EF+ K RG +G H T + AA CPS Sbjct: 1 MCATIRDEVPSNLVEWVRYHALLGVGRFMLFDHNSSQPVFTSLEPYVRGGLVDVFFHASHHRTGGGFAESSHGFAHEQCIRIGKMRHTWMAFIDADEYIFVRGDDCPSLPSILSEYESFGALGLNWVMFGSSGHVKRPAAGNLMSYTKCLPYNHDVNTHVKSIVNLRFVAGLNWSPHHFTLSQHKEQVNELKVPFEGPFSKPPSHVRIMLYHYFTRSLEEFERKSSRGDASGMKHVTRRSVSGPAAAAAAACPS 254
BLAST of jgi.p|Trimin1|353045 vs. uniprot
Match: A0A059LNK4_9CHLO (Glycosyltransferase family 92 protein n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LNK4_9CHLO) HSP 1 Score: 180 bits (457), Expect = 1.070e-50 Identity = 101/262 (38.55%), Postives = 137/262 (52.29%), Query Frame = 1 Query: 112 QDTQALAMCAVFKDQNPDIRTWVEYHYRMGFDAFYILDDGSKEPATAELADYIAAGVVHYDLVSRRKLPHP-------MQKHAYGKCLAEWGSRHTWMAFLDVDEFIVVNDPRNVT--LLQLLTTYQQFGGVGLNWIMFGSSGHTERPPDG-VSQYTACTPPSFFHNKHIKSVVNIKHTSGRGTSPHHFSYANGYWAVNTDGQKIDGPFNEPPTYGRAHINHYFTKSLAEFQEKIERGAGNGSHKTMQLFHDVNEAATETCP 867 +D +A C KD++ D+R W++YH +G FY+ + + E + L D I GVV Y LPH MQ Y CL RH WMAF+DVDEF+V P N T L +L Y G+ +NW + GS GH RP +G ++ Y +CTP SF N H+KS+VN + + T PHHF Y G A T +DGP Y + + HY KS E++ K+ RG+ G++K M F V+ AATE CP Sbjct: 80 EDGSYVAACVAVKDRSDDLREWIDYHRALGVGHFYVFETDTAEASDWALEDLIQEGVVDYYY-----LPHVTPTTVPMMQIRIYRLCLQHTRHRHAWMAFVDVDEFLV---PTNATQGLKGVLEEYADVPGLVVNWRLMGSGGHEGRPAEGTLAAYQSCTPVSFHDNLHVKSIVNTRLVANTSTDPHHFEYLGGATAFTTARDPVDGPAAPAVHYEKLALFHYALKSREEYELKMLRGSAMGNYKGMDFFDRVDAAATEQCP 333
BLAST of jgi.p|Trimin1|353045 vs. uniprot
Match: A0A7J7PLB3_9CHLO (Glycosyltransferase family 92 protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PLB3_9CHLO) HSP 1 Score: 179 bits (454), Expect = 2.180e-50 Identity = 94/274 (34.31%), Postives = 145/274 (52.92%), Query Frame = 1 Query: 70 HGLLQTEQRQQPVEQDTQALAMCAVFKDQNPDIRTWVEYHYRMGFDAFYILDDGSKEPATAELADYIAAGVVHYDLVS-----RRKLPHPMQKHAYGKCLAEWGSRHTWMAFLDVDEFIVVNDPRNV-TLLQLLTTYQQFGGVGLNWIMFGSSGHTERPPDGVS-QYTACTPPSFFHNKHIKSVVNIKHTSGRGTSPHHFSYAN--GYWAVNTDGQKIDGPFNEPPTYGRAHINHYFTKSLAEFQEKIERGAGNGSHKTMQLFHDVNEAATETC 864 HG+L+ R+ P + +A+CA+ K+Q+ D+R W+EYH +G Y+ D+ S P ++ D + +G V Y + R Q AY C+ + RH W+AF+D DEFIV+ + + Y Q+GG+ LNW++FGSSGH +RP GV Y C P N+H+K + N H G +PH Y + + VN G + GP PP++ + + HY TKS E+ +K+ RG+ G++K+ + F +N ATE C Sbjct: 26 HGILKIPDRKDPKQYPDGFVAICAIVKNQHQDLREWLEYHKWLGVSKVYVYDNNSTVPLLPDIIDMVQSGYVEYSYFTGTPRYRDLFRTSSQWWAYNDCVTRFKHRHRWLAFVDADEFIVLQGAAGADNINDFMRGYDQYGGLALNWVVFGSSGHKQRPQGGVLVNYRQCLPLQQEQNQHVKVIANTAHLMTIGDNPHRVYYNDMKRFGTVNELGAPVPGP-KSPPSHTKVALYHYLTKSEDEYMQKMRRGSAAGNYKSPEFFTAINGLATERC 298
BLAST of jgi.p|Trimin1|353045 vs. uniprot
Match: A0A383WJP7_TETOB (Glycosyltransferase family 92 protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WJP7_TETOB) HSP 1 Score: 184 bits (467), Expect = 2.250e-50 Identity = 97/274 (35.40%), Postives = 145/274 (52.92%), Query Frame = 1 Query: 70 HGLLQTEQRQQPVEQDTQALAMCAVFKDQNPDIRTWVEYHYRMGFDAFYILDDGSKEPATAELADYIAAGVVHYDLVS-----RRKLPHPMQKHAYGKCLAEWGSRHTWMAFLDVDEFIVVNDPRNVTLLQ-LLTTYQQFGGVGLNWIMFGSSGHTERPPDGVS-QYTACTPPSFFHNKHIKSVVNIKHTSGRGTSPHHFSYAN--GYWAVNTDGQKIDGPFNEPPTYGRAHINHYFTKSLAEFQEKIERGAGNGSHKTMQLFHDVNEAATETC 864 HG+L+ R+ P + +A+CA+ K+Q+ D+R W+EYH +G Y+ D+ S P ++ D + AG V Y + R Q AY C+ + RH W+AF+D DEFIV++D + + Y Q+GG+ LNW++FGSSGH +RP GV Y C P N+H+K + N H G PH Y + Y VN G + GP PP++ + + HY TKS E+ +K+ RG+ G++K + F +N ATE C Sbjct: 212 HGILKIPDRKDPKQYPDGYVAICAIVKNQHQDLREWLEYHKWIGVGKVYVYDNNSTVPLLPDIIDMVQAGFVEYSYFTGMPRYRDLFRTSSQWWAYNDCVTRFRHRHRWLAFIDADEFIVLHDAAGTNNINDFMRGYDQYGGLALNWVVFGSSGHKQRPHGGVLVNYRQCLPLQQEQNQHVKVIANTAHLMTVGDDPHRVYYHDMKRYSTVNELGVPVPGP-KSPPSHSKVALYHYLTKSEGEYMQKMRRGSAAGNYKAPEFFTAINGLATERC 484
BLAST of jgi.p|Trimin1|353045 vs. uniprot
Match: A0A059LLJ4_9CHLO (Glycosyltransferase family 92 protein n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LLJ4_9CHLO) HSP 1 Score: 180 bits (456), Expect = 2.930e-50 Identity = 97/258 (37.60%), Postives = 136/258 (52.71%), Query Frame = 1 Query: 109 EQDTQALAMCAVFKDQNPDIRTWVEYHYRMGFDAFYILDDGSKEPATAELADYIAAGVVHYDL---VSRRKLPHPMQKHAYGKCLAEWGSRHTWMAFLDVDEFIVVND--PRNVTLLQLLTTYQQFGGVGLNWIMFGSSGHTERP-PDGVSQYTACTPPSFFHNKHIKSVVNIKHTSGRGTSPHHFSYANGYWAVNTDGQKIDGPFNEPPTYGRAHINHYFTKSLAEFQEKIERGAGNGSHKTMQLFHDVNEAATETC 864 E D + +C+ KDQ+ D+R W+ YH +G + FY+ D GS P L D+I +G+VHY R H Q Y +CL H WMAF+DVDEF+V+ D P TLL+ ++ G + LNW++FGSSG ++P + ++ Y C P N H+KSVV + T PHHF Y Y A + G+ + GP + R ++HY KS EF K+ RG+G G+ KTM FH V+ T C Sbjct: 105 ESDAAFVTICSAVKDQHADVREWIVYHRAIGVERFYLHDTGSVPPMDTVLPDFIESGLVHYRYDAATPHRAGTHGPQITVYERCLESGRVAHPWMAFIDVDEFVVLRDATPDFPTLLR---EFEDAGALVLNWVVFGSSGLEKKPRTNTLASYWQCAPDGHPENLHVKSVVRPARVNDTRTDPHHFKYRAPYVAKSAGGETVAGPKSSRQATARVALHHYAIKSREEFGAKMARGSGMGNQKTMAFFHYVDNYTTANC 359 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353045 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13400 ID=mRNA_13400|Name=jgi.p|Trimin1|353045|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=939bp|location=Sequence derived from alignment at Contig_141:319687..321203+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGTGCTTTTCGACGCTGGGCAACGTCCAGTTGGTGGATCGGCAACTTCCback to top protein sequence of jgi.p|Trimin1|353045 >Trimin1|353045|estExt_Genemark1.C_Ctg_1410053 ID=Trimin1|353045|estExt_Genemark1.C_Ctg_1410053|Name=jgi.p|Trimin1|353045|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=304bp MCFSTLGNVQLVDRQLPEQQQREHGLLQTEQRQQPVEQDTQALAMCAVFKback to top mRNA from alignment at Contig_141:319687..321203+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_13400 ID=mRNA_13400|Name=jgi.p|Trimin1|353045|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1517bp|location=Sequence derived from alignment at Contig_141:319687..321203+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_141:319687..321203+ >mRNA_13400 ID=mRNA_13400|Name=jgi.p|Trimin1|353045|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=912bp|location=Sequence derived from alignment at Contig_141:319687..321203+ (Tribonema minus UTEX_B_3156 )back to top |