mRNA_13369 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|353026 vs. uniprot
Match: A0A836CN71_9STRA (Grap2 and cyclin-D-interacting-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN71_9STRA) HSP 1 Score: 728 bits (1878), Expect = 7.320e-264 Identity = 402/402 (100.00%), Postives = 402/402 (100.00%), Query Frame = 1 Query: 1 MSALAEGSTQQQLQWLAAKADAQLQATAAIKPHVPPQWQLMSWATPSDSLKVALSVMLTAANSISGSSTRFTLLFKTAPPPEITAGMVNEMGSLSDHLASSLAVALAPEQGVSPSLAVAIIGAVRAVQVALLELVKSVAAGPSTEPEWNHLTGALWEACKGVAEVPTTNKLAVRMQLMCVSMSIKDTIDEFKAALEAAEAADGGLSGEVSALSISGSADNQSHEPGKTADSARDEAVDSFDDLVDYMDGEGADEDAMSPAEAEAAAAVVELLRTSRACIKTANDAMAAATGSGAARGVMAWAGPLCEEVQSLAEQVGDVGMALYPPMEGAAVVAAADGFGARVTACLDKVDAAQERDAAAVEHLRGVLTERLDAKPTRATRLSPANRCRKAAAATADGGSCG 1206 MSALAEGSTQQQLQWLAAKADAQLQATAAIKPHVPPQWQLMSWATPSDSLKVALSVMLTAANSISGSSTRFTLLFKTAPPPEITAGMVNEMGSLSDHLASSLAVALAPEQGVSPSLAVAIIGAVRAVQVALLELVKSVAAGPSTEPEWNHLTGALWEACKGVAEVPTTNKLAVRMQLMCVSMSIKDTIDEFKAALEAAEAADGGLSGEVSALSISGSADNQSHEPGKTADSARDEAVDSFDDLVDYMDGEGADEDAMSPAEAEAAAAVVELLRTSRACIKTANDAMAAATGSGAARGVMAWAGPLCEEVQSLAEQVGDVGMALYPPMEGAAVVAAADGFGARVTACLDKVDAAQERDAAAVEHLRGVLTERLDAKPTRATRLSPANRCRKAAAATADGGSCG Sbjct: 1 MSALAEGSTQQQLQWLAAKADAQLQATAAIKPHVPPQWQLMSWATPSDSLKVALSVMLTAANSISGSSTRFTLLFKTAPPPEITAGMVNEMGSLSDHLASSLAVALAPEQGVSPSLAVAIIGAVRAVQVALLELVKSVAAGPSTEPEWNHLTGALWEACKGVAEVPTTNKLAVRMQLMCVSMSIKDTIDEFKAALEAAEAADGGLSGEVSALSISGSADNQSHEPGKTADSARDEAVDSFDDLVDYMDGEGADEDAMSPAEAEAAAAVVELLRTSRACIKTANDAMAAATGSGAARGVMAWAGPLCEEVQSLAEQVGDVGMALYPPMEGAAVVAAADGFGARVTACLDKVDAAQERDAAAVEHLRGVLTERLDAKPTRATRLSPANRCRKAAAATADGGSCG 402
BLAST of jgi.p|Trimin1|353026 vs. uniprot
Match: A0A6H5KEE9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KEE9_9PHAE) HSP 1 Score: 111 bits (277), Expect = 1.390e-23 Identity = 108/348 (31.03%), Postives = 164/348 (47.13%), Query Frame = 1 Query: 127 WATPSDSLKVALSVMLTAANSISGSSTRFTLLFKTAPPPEITAGMVNEMGSLSDHLASSLAVALAPEQGVSPSLAVAIIGAVRAVQVALLELVKSVAAGPSTEPEWNHLTGALWEACKGVAEVPTTNKLAVRMQLMCVSMSIKDTIDEFKAALEAAEAADGGLSGEVSALSISGSADNQSHEPGKTADSARDE--AVDSFDDLVDYMDGEGADEDAMSPAEAEAAAAVVELLRTSRACIKTANDAM---------------AAATGSGAARGVMAWAGPLCEEVQSLAEQVGDVGMALYPPMEGAAVVAAADGFGARVTACLDKVDAAQERDAAAVEH-LRGVLTERL 1116 W+ S+ + VAL V+ A+ SI TR L++K P + M EMG + +SL L G S S+ VRAV ++ +L+ ++ PS N LTG +W+ CK + + P TNKLA R Q+M S+++KDTIDEF +EAA+ A +G+ + G D Q + E A +FDD D +G DE+ AE A V++LR R C+K AND++ A G G +G + WA + + E G+VG+ LYPP++G ++ A+ + A + A E + +E LR + E+L Sbjct: 38 WSKNSEDVDVALRVIGAASQSIHDGVTRLNLVYKANPSEVASESMSREMGGFCQQMVASLT--LLSSVGASKSMVTYFSAGVRAVLHSVKDLIGAL-LDPSRHARLNGLTGTVWQTCKELQQAPKTNKLACRRQMMQWSVAVKDTIDEF---VEAAKTAAMANAGKSESAGDKGGLDEQFAAKVTVGGAGEGEVGAEGTFDDF----DFDGMDEN-YGAAELSCVEASVDVLRVFRRCLKAANDSLNSLDSPEPQEESGATAGPAGEGWLQGKLEWAKSVQTHLDDANECAGEVGVLLYPPLDGGELLGRANDLEKSLAAFFEVFSAGGEGTNSEMESPLRKAVVEKL 374
BLAST of jgi.p|Trimin1|353026 vs. uniprot
Match: A0A7S2V7F1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V7F1_9STRA) HSP 1 Score: 53.1 bits (126), Expect = 7.460e-5 Identity = 28/65 (43.08%), Postives = 44/65 (67.69%), Query Frame = 1 Query: 124 SWATPSDSLKVALSVMLTAANSISGSSTRFTLLFKTAPPPEITAGMVNEMGSLSDHLASSLAVAL 318 SW+ PS+ L+ AL+V+ TA NSIS SST+F LLFK +P E + + E+ S + L++++ + L Sbjct: 45 SWSKPSEHLETALTVIFTANNSISNSSTKFALLFKASPNVEQASSICKELSSSCEKLSTAVRILL 109
BLAST of jgi.p|Trimin1|353026 vs. uniprot
Match: F0WAH9_9STRA (Uncharacterized protein AlNc14C46G3704 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WAH9_9STRA) HSP 1 Score: 55.5 bits (132), Expect = 8.020e-5 Identity = 48/161 (29.81%), Postives = 79/161 (49.07%), Query Frame = 1 Query: 127 WATPSDSLKVALSVMLTAANSISGSSTRFTLLFKTAPPPEITAGMVNEMGSLSDHLASSLAVALAPEQGVSPSLAVAIIGAVRAVQVALLELVKSVAAGPSTE-PEWNHLTGALWEACKGVAEVPTTNKLAVRMQLMCVSMSIKDTIDEFKAALEAAEAAD 606 W T ++S + V++ AA SIS T+F+++ P E M + + S++ AL GV PSLA +I+ + + +L EL ++ PE LTG +W++CK V E+PT+N + + + + D+I E K LEA + D Sbjct: 40 WDT-TESFTITRQVLIAAAGSISHEITKFSMVHTKNPSVEEAQSMCKSLRKPCEQFFSAVKTALFC--GVGPSLAASIVQSSIRIFHSLRELTTALQKEEMRRVPE---LTGRIWDSCKSVEEIPTSNHASFQRNTLETLSMLGDSIKELKECLEATKETD 194 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353026 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13369 ID=mRNA_13369|Name=jgi.p|Trimin1|353026|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1209bp|location=Sequence derived from alignment at Contig_141:139918..143232+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGAGTGCGCTCGCCGAGGGGTCGACTCAGCAGCAGCTGCAGTGGCTGGCback to top protein sequence of jgi.p|Trimin1|353026 >Trimin1|353026|estExt_Genemark1.C_Ctg_1410024 ID=Trimin1|353026|estExt_Genemark1.C_Ctg_1410024|Name=jgi.p|Trimin1|353026|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=403bp MSALAEGSTQQQLQWLAAKADAQLQATAAIKPHVPPQWQLMSWATPSDSLback to top mRNA from alignment at Contig_141:139918..143232+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_13369 ID=mRNA_13369|Name=jgi.p|Trimin1|353026|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3315bp|location=Sequence derived from alignment at Contig_141:139918..143232+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_141:139918..143232+ >mRNA_13369 ID=mRNA_13369|Name=jgi.p|Trimin1|353026|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1209bp|location=Sequence derived from alignment at Contig_141:139918..143232+ (Tribonema minus UTEX_B_3156 )back to top |