mRNA_13347 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353504
Unique NamemRNA_13347
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|353504 vs. uniprot
Match: A0A835Z946_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z946_9STRA)

HSP 1 Score: 229 bits (585), Expect = 1.270e-72
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 1 
Query:    1 MERGRVSAACTLVLTGRLSVAAGRDEFPSDAGPWSVLAADALLSPEGHYKPDFSARVASDALRIVRMSRATFEVVKEAPVTPPATSPREADAVAVGRGDGGGSTAGGERXXSGXVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRSTRRAQMKKPLLPR 516
            MERGRVSAACTLVLTGRLSVAAGRDEFPSDAGPWSVLAADALLSPEGHYKPDFSARVASDALRIVRMSRATFEVVKEAPVTPPATSPREADAVAVGRGDGGGSTAGGERXXSGXVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRSTRRAQMKKPLLPR
Sbjct:    1 MERGRVSAACTLVLTGRLSVAAGRDEFPSDAGPWSVLAADALLSPEGHYKPDFSARVASDALRIVRMSRATFEVVKEAPVTPPATSPREADAVAVGRGDGGGSTAGGERXXSGXVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRSTRRAQMKKPLLPR 172
[Close]
BLAST of jgi.p|Trimin1|353504 vs. uniprot
Match: A0A835ZG32_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG32_9STRA)

HSP 1 Score: 226 bits (575), Expect = 2.480e-65
Identity = 170/171 (99.42%), Postives = 170/171 (99.42%), Query Frame = 1 
Query:    4 ERGRVSAACTLVLTGRLSVAAGRDEFPSDAGPWSVLAADALLSPEGHYKPDFSARVASDALRIVRMSRATFEVVKEAPVTPPATSPREADAVAVGRGDGGGSTAGGERXXSGXVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRSTRRAQMKKPLLPR 516
             RGRVSAACTLVLTGRLSVAAGRDEFPSDAGPWSVLAADALLSPEGHYKPDFSARVASDALRIVRMSRATFEVVKEAPVTPPATSPREADAVAVGRGDGGGSTAGGERXXSGXVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRSTRRAQMKKPLLPR
Sbjct:  517 RRGRVSAACTLVLTGRLSVAAGRDEFPSDAGPWSVLAADALLSPEGHYKPDFSARVASDALRIVRMSRATFEVVKEAPVTPPATSPREADAVAVGRGDGGGSTAGGERXXSGXVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRSTRRAQMKKPLLPR 687
[Close]
BLAST of jgi.p|Trimin1|353504 vs. uniprot
Match: A0A835YX11_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX11_9STRA)

HSP 1 Score: 112 bits (279), Expect = 2.660e-24
Identity = 53/75 (70.67%), Postives = 64/75 (85.33%), Query Frame = 1 
Query:    4 ERGRVSAACTLVLTGRLSVAAGRDEFPSDAGPWSVLAADALLSPEGHYKPDFSARVASDALRIVRMSRATFEVVK 228
             RGRVS ACTLVLTGRL+VAAGRD F S++GPWSVL ADALL+ EG Y+PDFSA ++SD LR++RM+RATF  +K
Sbjct:  397 RRGRVSTACTLVLTGRLTVAAGRDAFQSESGPWSVLGADALLAAEGAYRPDFSASISSDQLRVIRMNRATFAALK 471
[Close]
BLAST of jgi.p|Trimin1|353504 vs. uniprot
Match: D8LQ70_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ70_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 9.650e-19
Identity = 46/74 (62.16%), Postives = 56/74 (75.68%), Query Frame = 1 
Query:    4 ERGRVSAACTLVLTGRLSVAAGRDEFPSDAGPWSVLAADALLSPEGHYKPDFSARVASDALRIVRMSRATFEVV 225
             RGR S  CTL+LTG++ V AGRD F SDAGPW+VL ADAL+  EG YKPDFSA   S+ LR VR+S+A+F+ V
Sbjct:  449 RRGRTSTMCTLILTGKVVVLAGRDGFRSDAGPWTVLGADALVEDEGAYKPDFSAHAGSERLRCVRISKASFDTV 522
[Close]
BLAST of jgi.p|Trimin1|353504 vs. uniprot
Match: A0A7S2SUL8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUL8_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.270e-15
Identity = 42/71 (59.15%), Postives = 53/71 (74.65%), Query Frame = 1 
Query:    4 ERGRVSAACTLVLTGRLSVAAGRDEFPSDAGPWSVLAADALLSPEGHYKPDFSARVASDALRIVRMSRATF 216
             RGR S+  TLVL+GRL+V AG+D F SDAGPW+VL  DALL  EG Y PDF+A +A++ +R +RMSR  F
Sbjct:  488 RRGRASSTMTLVLSGRLAVVAGKDGFRSDAGPWTVLGCDALLQEEGGYIPDFTAYIATENVRCIRMSRFDF 558
[Close]
BLAST of jgi.p|Trimin1|353504 vs. uniprot
Match: A0A7S3ZR18_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZR18_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 6.320e-14
Identity = 40/71 (56.34%), Postives = 54/71 (76.06%), Query Frame = 1 
Query:    7 RGRVSAACTLVLTGRLSVAAGRDEFPSDAGPWSVLAADALLSPEGHYKPDFSARVASDALRIVRMSRATFE 219
            RG  ++  TLVL G+LSV AG D F ++AGPW+VL ADAL+S EG + PDFSA VA+D++R V ++RA +E
Sbjct:  497 RGEAASYATLVLNGKLSVLAGVDGFRAEAGPWTVLGADALVSDEGSFVPDFSAHVATDSVRCVHVTRAEYE 567
[Close]
BLAST of jgi.p|Trimin1|353504 vs. uniprot
Match: A0A7S3JS20_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JS20_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 6.210e-11
Identity = 35/61 (57.38%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:   34 LVLTGRLSVAAGRDEFPSDAGPWSVLAADALLSPEGHYKPDFSARVASDALRIVRMSRATF 216
            LVL G+L+V AG+D F S+AGPW+VL ADAL+S    Y+PDFSA VA+D +R+V + RA +
Sbjct:  561 LVLGGKLTVLAGKDGFRSEAGPWTVLGADALVSKAKEYRPDFSAHVATDTVRLVYIQRADY 621
[Close]
BLAST of jgi.p|Trimin1|353504 vs. uniprot
Match: A0A7S1B913_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B913_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.500e-10
Identity = 36/73 (49.32%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:    4 ERGRVSAACTLVLTGRLSVAAGRDEFPSDAGPWSVLAADALLSPEGHYKPDFSARVASDALRIVRMSRATFEV 222
            ERG+ +  CTL+L G++++ AG+D F S+ GPWSVLAA AL++P   Y PDF A VAS+  R++R     F V
Sbjct:  489 ERGQETEVCTLLLNGKITILAGKDGFRSEVGPWSVLAAQALVAPG--YVPDFDAFVASEKCRMLRFQLPRFHV 559
[Close]
BLAST of jgi.p|Trimin1|353504 vs. uniprot
Match: A0A7J6RRC9_PEROL (Metal transporter cnnm2 n=3 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6RRC9_PEROL)

HSP 1 Score: 69.3 bits (168), Expect = 1.440e-9
Identity = 37/76 (48.68%), Postives = 51/76 (67.11%), Query Frame = 1 
Query:    4 ERGRVSAACTLVLTGRLSVAAGRDEFPSDAGPWSVLAADALLSPEGHYKPDFSARVASDALRIVRMSRATFEVVKE 231
             RG  +  C +VLTGRL+V AG D+F S+AG +SVLA +ALL     Y PDFSARV S+ +R +++SR  ++   E
Sbjct:  477 RRGVETDVCCIVLTGRLAVLAGHDKFRSEAGAFSVLAVEALL--HDGYAPDFSARVGSEKVRCIKISRPVYDEAVE 550
[Close]
BLAST of jgi.p|Trimin1|353504 vs. uniprot
Match: A0A7J6LAQ6_PEROL (Metal transporter cnnm2 n=3 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6LAQ6_PEROL)

HSP 1 Score: 69.3 bits (168), Expect = 1.660e-9
Identity = 37/76 (48.68%), Postives = 51/76 (67.11%), Query Frame = 1 
Query:    4 ERGRVSAACTLVLTGRLSVAAGRDEFPSDAGPWSVLAADALLSPEGHYKPDFSARVASDALRIVRMSRATFEVVKE 231
             RG  +  C +VLTGRL+V AG D+F S+AG +SVLA +ALL     Y PDFSARV S+ +R +++SR  ++   E
Sbjct:  711 RRGVETDVCCIVLTGRLAVLAGHDKFRSEAGAFSVLAVEALL--HDGYAPDFSARVGSEKVRCIKISRPVYDEAVE 784
[Close]
BLAST of jgi.p|Trimin1|353504 vs. uniprot
Match: A0A835ZB80_9STRA (Telomere-capping, CST complex subunit-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB80_9STRA)

HSP 1 Score: 177 bits (449), Expect = 1.040e-55
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 
Query:    1 MHFNAATRVATLQHGTCTLAVDATLLPEFDFRIGSLFEFIGTVQVAGLERRVAARAHRNVDGLDMALYENVLRVRRAFLRTLSSEGGRAS 270
            MHFNAATRVATLQHGTCTLAVDATLLPEFDFRIGSLFEFIGTVQVAGLERRVAARAHRNVDGLDMALYENVLRVRRAFLRTLSSEGGRAS
Sbjct:    1 MHFNAATRVATLQHGTCTLAVDATLLPEFDFRIGSLFEFIGTVQVAGLERRVAARAHRNVDGLDMALYENVLRVRRAFLRTLSSEGGRAS 90
[Close]
BLAST of jgi.p|Trimin1|353504 vs. uniprot
Match: W4H842_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H842_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.670e-10
Identity = 32/79 (40.51%), Postives = 48/79 (60.76%), Query Frame = 1 
Query:    7 FNAATRVATLQHGTCTLAVDATLLPEFDFRIGSLFEFIGTVQVAGLERRVAARAHRNVDGLDMALYENVLRVRRAFLRT 243
            ++AA  +A+L      + V   LL  FDF IGSL++FIG       + ++ AR  RNVDGLD  L+ + L++RR F++T
Sbjct:   32 YDAAKSIASLSFQNAVIVVATDLLVNFDFAIGSLYQFIGETYANEGKMQLRARVGRNVDGLDTQLFVDALKLRREFIKT 110
[Close]
BLAST of jgi.p|Trimin1|353504 vs. uniprot
Match: D8RL68_SELML (Uncharacterized protein (Fragment) n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RL68_SELML)

HSP 1 Score: 62.4 bits (150), Expect = 4.170e-10
Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = 1 
Query:    7 FNAATRVATLQHGTCTLAVDATLLPEFDFRIGSLFEFIGTVQVA-GLERRVAARAHRNVDGLDMALYENVLRVRRAF 234
            F+  + VA ++H    LAVD TLL +   R GSL++FIG + +  G+  R  AR  RNVDGLD+ LYE  LR+RR F
Sbjct:   34 FDVESGVAHIRHEGAKLAVDTTLLRDIHLRPGSLYQFIGELLLQNGMMLR--ARVARNVDGLDVKLYEKALRLRRIF 108
[Close]
BLAST of jgi.p|Trimin1|353504 vs. uniprot
Match: A0A485LP17_9STRA (Aste57867_23900 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LP17_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 9.320e-10
Identity = 30/79 (37.97%), Postives = 48/79 (60.76%), Query Frame = 1 
Query:    7 FNAATRVATLQHGTCTLAVDATLLPEFDFRIGSLFEFIGTVQVAGLERRVAARAHRNVDGLDMALYENVLRVRRAFLRT 243
            ++A   +A L     T+ V   LL  FDF IGS+++FIG       + ++ AR  RNVDGLD+ ++ + L++RR F++T
Sbjct:   32 YDANKSLAALSFQNATIVVSTELLVNFDFMIGSMYQFIGETYAHEGKLQLRARVGRNVDGLDIQMFTDALKLRRDFIKT 110
[Close]
BLAST of jgi.p|Trimin1|353504 vs. uniprot
Match: A0A6G0XY99_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XY99_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 9.320e-10
Identity = 31/79 (39.24%), Postives = 49/79 (62.03%), Query Frame = 1 
Query:    7 FNAATRVATLQHGTCTLAVDATLLPEFDFRIGSLFEFIGTVQVAGLERRVAARAHRNVDGLDMALYENVLRVRRAFLRT 243
            +NA   +AT+     T+ V   LL  F+F IGSL++FIG       + ++ AR  RNVDGLD+ ++ + L++RR F++T
Sbjct:   32 YNANKAMATITFQNSTIVVSTELLVNFEFVIGSLYQFIGETYSDEGKLQLRARVGRNVDGLDIQMFMDALKLRREFIKT 110
[Close]
BLAST of jgi.p|Trimin1|353504 vs. uniprot
Match: A0A024UV78_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UV78_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.310e-9
Identity = 31/79 (39.24%), Postives = 48/79 (60.76%), Query Frame = 1 
Query:    7 FNAATRVATLQHGTCTLAVDATLLPEFDFRIGSLFEFIGTVQVAGLERRVAARAHRNVDGLDMALYENVLRVRRAFLRT 243
            ++A+  +ATL      + V   LL  FDF +GSL++FIG       + ++ AR  RNVDGLD  L+ + L++RR F++T
Sbjct:   32 YDASKCLATLSFQNSVIVVATDLLVNFDFAVGSLYQFIGETYTNEGKMQLRARVGRNVDGLDTQLFLDALKLRREFIKT 110
[Close]
BLAST of jgi.p|Trimin1|353504 vs. uniprot
Match: A0A1V9YY36_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YY36_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.610e-9
Identity = 29/79 (36.71%), Postives = 48/79 (60.76%), Query Frame = 1 
Query:    7 FNAATRVATLQHGTCTLAVDATLLPEFDFRIGSLFEFIGTVQVAGLERRVAARAHRNVDGLDMALYENVLRVRRAFLRT 243
            F+A+ R A++     ++ V   LL   +  +GSL++FIG       E R+ AR  RNVDGLD+ ++ + L++RR F++T
Sbjct:   32 FDASQRTASISFQNSSMKVTTELLSNVELNLGSLYQFIGETYEQNGELRLKARIGRNVDGLDIQMFLDALKIRREFIKT 110
[Close]
BLAST of jgi.p|Trimin1|353504 vs. uniprot
Match: A0A2K1IND3_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IND3_PHYPA)

HSP 1 Score: 60.1 bits (144), Expect = 4.400e-9
Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = 1 
Query:    7 FNAATRVATLQHGTCTLAVDATLLPEFDFRIGSLFEFIGTVQVAGLER-RVAARAHRNVDGLDMALYENVLRVRRAF 234
            F++ + +A L     +L +D   L E   R+GSLFEFIG ++V   ++  + AR  RNVDG+DM L++ VL++RR F
Sbjct:   39 FDSTSGIAVLVDAGASLRLDLEHLRELPLRVGSLFEFIGELEVDTTQQLTLKARVGRNVDGMDMKLFDKVLQLRRRF 115
[Close]
BLAST of jgi.p|Trimin1|353504 vs. uniprot
Match: A0A804Q449_MAIZE (Uncharacterized protein n=2 Tax=Zea mays TaxID=4577 RepID=A0A804Q449_MAIZE)

HSP 1 Score: 59.7 bits (143), Expect = 8.500e-9
Identity = 31/75 (41.33%), Postives = 47/75 (62.67%), Query Frame = 1 
Query:    7 FNAATRVATLQHGTCTLAVDATLLPEFDFRIGSLFEFIGTVQVAGLERRVA-ARAHRNVDGLDMALYENVLRVRR 228
            F+  +  AT+Q G+ +L VD   L +  FR  S+++FIG +Q+  ++  +  AR  RNVDGLDM LY+  L +RR
Sbjct:   51 FDVESATATIQDGSVSLKVDTQHLRDVSFRTNSVYQFIGELQIREVDDAILLARIGRNVDGLDMNLYQQALLIRR 125
[Close]
BLAST of jgi.p|Trimin1|353504 vs. uniprot
Match: A0A4P9WP25_9FUNG (Telomere-capping, CST complex subunit-domain-containing protein n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9WP25_9FUNG)

HSP 1 Score: 58.9 bits (141), Expect = 1.450e-8
Identity = 33/81 (40.74%), Postives = 47/81 (58.02%), Query Frame = 1 
Query:    7 FNAATRVATLQHGTCTLAVDATLLPEFDFRIGSLFEFIGTVQ-----VAGLERRVAARAHRNVDGLDMALYENVLRVRRAF 234
            ++  T +A ++HG   L VD TLL +F  R+ SL +FIG ++       G    + AR  RNVDGLD+ L+E  L +RR F
Sbjct:   39 YDVPTNIAVIEHGGERLLVDVTLLGDFPHRLKSLLQFIGELEDHAPHAGGGSVVLRARIVRNVDGLDLKLFEQSLLIRRRF 119
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353504 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A835Z946_9STRA1.270e-72100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZG32_9STRA2.480e-6599.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YX11_9STRA2.660e-2470.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LQ70_ECTSI9.650e-1962.16Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2SUL8_9STRA2.270e-1559.15Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3ZR18_9STRA6.320e-1456.34Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3JS20_9STRA6.210e-1157.38Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S1B913_9STRA1.500e-1049.32Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7J6RRC9_PEROL1.440e-948.68Metal transporter cnnm2 n=3 Tax=Perkinsus olseni T... [more]
A0A7J6LAQ6_PEROL1.660e-948.68Metal transporter cnnm2 n=3 Tax=Perkinsus olseni T... [more]

Pages

back to top
BLAST of jgi.p|Trimin1|353504 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZB80_9STRA1.040e-55100.00Telomere-capping, CST complex subunit-domain-conta... [more]
W4H842_9STRA1.670e-1040.51Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
D8RL68_SELML4.170e-1048.05Uncharacterized protein (Fragment) n=3 Tax=Selagin... [more]
A0A485LP17_9STRA9.320e-1037.97Aste57867_23900 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0XY99_9STRA9.320e-1039.24Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024UV78_9STRA1.310e-939.24Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A1V9YY36_9STRA2.610e-936.71Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A2K1IND3_PHYPA4.400e-941.56Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
A0A804Q449_MAIZE8.500e-941.33Uncharacterized protein n=2 Tax=Zea mays TaxID=457... [more]
A0A4P9WP25_9FUNG1.450e-840.74Telomere-capping, CST complex subunit-domain-conta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_166contigContig_166:332895..334139 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353504|estExt_Genemark1.C_Ctg_1660050
KEGG TC9.A.40.3
BRITEko00000,ko02000
KEGG koko:K16302
GOsGO:0000003,GO:0000166,GO:0003006,GO:0003674,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0006873,GO:0007275,GO:0007548,GO:0007568,GO:0008144,GO:0008150,GO:0008324,GO:0008340,GO:0008406,GO:0009653,GO:0009887,GO:0009888,GO:0009987,GO:0010035,GO:0010038,GO:0010259,GO:0010960,GO:0015075,GO:0015077,GO:0015081,GO:0015095,GO:0015318,GO:0015672,GO:0015693,GO:0016020,GO:0016323,GO:0017076,GO:0019725,GO:0022414,GO:0022857,GO:0022890,GO:0030001,GO:0030425,GO:0030554,GO:0031214,GO:0032026,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034220,GO:0034505,GO:0035262,GO:0035639,GO:0035725,GO:0036094,GO:0036477,GO:0040008,GO:0040014,GO:0040018,GO:0040026,GO:0040028,GO:0042221,GO:0042475,GO:0042476,GO:0042592,GO:0042995,GO:0043005,GO:0043025,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043900,GO:0043902,GO:0044297,GO:0044424,GO:0044425,GO:0044459,GO:0044463,GO:0044464,GO:0045137,GO:0045927,GO:0046873,GO:0048513,GO:0048518,GO:0048580,GO:0048582,GO:0048608,GO:0048638,GO:0048639,GO:0048646,GO:0048731,GO:0048856,GO:0048878,GO:0050789,GO:0050793,GO:0050801,GO:0050896,GO:0051094,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0055065,GO:0055080,GO:0055082,GO:0055085,GO:0061062,GO:0061063,GO:0061458,GO:0065007,GO:0065008,GO:0070166,GO:0070838,GO:0071944,GO:0072507,GO:0072511,GO:0080154,GO:0097159,GO:0097186,GO:0097367,GO:0097447,GO:0097458,GO:0098590,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0120025,GO:0120038,GO:1901265,GO:1901363,GO:1903830,GO:1905516,GO:2000026,GO:2000241,GO:2000243
Preferred nameCNNM2
Descriptionmagnesium ion homeostasis
COG categoryE
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1253@1|root,KOG2118@2759|Eukaryota
Evalue6.98e-21
Seed ortholog2880.D8LQ70
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionDomain of unknown function DUF21
Ec32 orthologEc-26_005930.1
TranscriptId353826
TrackFilteredModels1
ProteinId353504
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353504gene_13347Tribonema minus UTEX_B_3156 geneContig_166 332895..334139 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13347_2exon_13347_2Tribonema minus UTEX_B_3156 exonContig_166 332895..333759 -
exon_13347_1exon_13347_1Tribonema minus UTEX_B_3156 exonContig_166 334135..334139 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_13347UTR3_13347Tribonema minus UTEX_B_3156 three_prime_UTRContig_166 332895..333245 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13347CDS_13347Tribonema minus UTEX_B_3156 CDSContig_166 334135..334139 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353504Trimin1|353504|estExt_Genemark1.C_Ctg_1660050Tribonema minus UTEX_B_3156 polypeptideContig_166 333246..334139 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13347 ID=mRNA_13347|Name=jgi.p|Trimin1|353504|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=870bp|location=Sequence derived from alignment at Contig_166:332895..334139- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCGCGGCCGCGTGAGCGCGGCGTGCACGCTGGTCCTCACCGGCCG
ACTGAGCGTCGCCGCGGGGCGCGACGAGTTCCCTTCGGACGCCGGGCCGT
GGTCCGTGCTCGCCGCGGACGCGCTGCTGTCGCCCGAGGGGCACTACAAG
CCGGACTTCAGCGCGCGCGTCGCGTCCGACGCGCTGCGCATCGTGCGCAT
GAGCCGCGCCACGTTTGAAGTCGTCAAGGAGGCGCCGGTGACGCCCCCAG
CGACGTCGCCCCGCGAGGCGGATGCCGTGGCGGTTGGGCGGGGGGATGGC
GGGGGGTCTACTGCGGGGGGGGAGCGGGGGGGGTCTGGGGGGGTGGGGGG
AGGGGGGGCGTGGGGGGTGGGGGGGGGTGGCTCTGAGAGTGAAGTGCGGA
TTGGAGAGGAAGCTGATGAGCGAGTTGACGAGCAGGGTGAAGAGCAAGTT
GAAGAAGAGGGTGAAGAGAGGAGGTCCACGCGGCGCGCGCAGATGAAGAA
GCCGCTGCTGCCTCGATAGCATGTGTTGTGATGCACACTCCTGTTGGATG
TTTCGTTCTGTGGAAGTGGCAAAGGCCGGTGCTGCACGCCGGCCGGTACT
TAACGTTGAAGTTTCCAGATGAGTGATTTTGGTGTAGATGTGTCATCAGC
ACAGCAGACCACTGCACCACGGTGAACTGTACATGGCATGTACCATTAAG
GTGTGTCTGTGGGGGGTGAAAAAGCCATCATTACTGGCGTTGCGGTGGGG
TGAAAGTATTCATTATCGGCGTTGTGCACGATTGAGCAGATTAGAATGAG
CCGCCTTCAAACCAGTGGGTCAAGTTGTCATCCCAGGTCCGTGTCTAGTG
GCGGCAGCTGAGAGTAAAAC
back to top

protein sequence of jgi.p|Trimin1|353504

>Trimin1|353504|estExt_Genemark1.C_Ctg_1660050 ID=Trimin1|353504|estExt_Genemark1.C_Ctg_1660050|Name=jgi.p|Trimin1|353504|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=173bp
MERGRVSAACTLVLTGRLSVAAGRDEFPSDAGPWSVLAADALLSPEGHYK
PDFSARVASDALRIVRMSRATFEVVKEAPVTPPATSPREADAVAVGRGDG
GGSTAGGERGGSGGVGGGGAWGVGGGGSESEVRIGEEADERVDEQGEEQV
EEEGEERRSTRRAQMKKPLLPR*
back to top

mRNA from alignment at Contig_166:332895..334139-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13347 ID=mRNA_13347|Name=jgi.p|Trimin1|353504|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1245bp|location=Sequence derived from alignment at Contig_166:332895..334139- (Tribonema minus UTEX_B_3156 )
ATGGAGTGCGGTGTGATTTGTTTGTGTGGACTGCCTGACTGTCGGTGTGG
ACTTTTACGTCAAGACATGTCACACCCTGCATCGCAACCAAAAAGAAGCG
CCACGCAAGCACTTTCTGTGTGCAACCCGGTCCTGATGGCAGCTCGCAGC
ACAGGTACATCTGCAACACATACCAACATGTGAACACTTTGCTGCAAAGC
ACCGCTCGCATCCATAACAAGGGCCAACTCGCTGCGCCCGACATCCACCA
CCTACCTTTCCCGATGCGTTTCTTTCCGCTACCGCGCCGCCGCCGCCGCC
GTACGCACACAGAGTCGCCTGAGCCAGCCCGTGCCCCAACCTCCTAACCC
TAACCTTCACCCTACCCCCCCCTGGAGCAGGCGCGGCCGCGTGAGCGCGG
CGTGCACGCTGGTCCTCACCGGCCGACTGAGCGTCGCCGCGGGGCGCGAC
GAGTTCCCTTCGGACGCCGGGCCGTGGTCCGTGCTCGCCGCGGACGCGCT
GCTGTCGCCCGAGGGGCACTACAAGCCGGACTTCAGCGCGCGCGTCGCGT
CCGACGCGCTGCGCATCGTGCGCATGAGCCGCGCCACGTTTGAAGTCGTC
AAGGAGGCGCCGGTGACGCCCCCAGCGACGTCGCCCCGCGAGGCGGATGC
CGTGGCGGTTGGGCGGGGGGATGGCGGGGGGTCTACTGCGGGGGGGGAGC
GGGGGGGGTCTGGGGGGGTGGGGGGAGGGGGGGCGTGGGGGGTGGGGGGG
GGTGGCTCTGAGAGTGAAGTGCGGATTGGAGAGGAAGCTGATGAGCGAGT
TGACGAGCAGGGTGAAGAGCAAGTTGAAGAAGAGGGTGAAGAGAGGAGGT
CCACGCGGCGCGCGCAGATGAAGAAGCCGCTGCTGCCTCGATAGCATGTG
TTGTGATGCACACTCCTGTTGGATGTTTCGTTCTGTGGAAGTGGCAAAGG
CCGGTGCTGCACGCCGGCCGGTACTTAACGTTGAAGTTTCCAGATGAGTG
ATTTTGGTGTAGATGTGTCATCAGCACAGCAGACCACTGCACCACGGTGA
ACTGTACATGGCATGTACCATTAAGGTGTGTCTGTGGGGGGTGAAAAAGC
CATCATTACTGGCGTTGCGGTGGGGTGAAAGTATTCATTATCGGCGTTGT
GCACGATTGAGCAGATTAGAATGAGCCGCCTTCAAACCAGTGGGTCAAGT
TGTCATCCCAGGTCCGTGTCTAGTGGCGGCAGCTGAGAGTAAAAC
back to top

Coding sequence (CDS) from alignment at Contig_166:332895..334139-

>mRNA_13347 ID=mRNA_13347|Name=jgi.p|Trimin1|353504|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=519bp|location=Sequence derived from alignment at Contig_166:332895..334139- (Tribonema minus UTEX_B_3156 )
ATGGAGCGCGGCCGCGTGAGCGCGGCGTGCACGCTGGTCCTCACCGGCCG
ACTGAGCGTCGCCGCGGGGCGCGACGAGTTCCCTTCGGACGCCGGGCCGT
GGTCCGTGCTCGCCGCGGACGCGCTGCTGTCGCCCGAGGGGCACTACAAG
CCGGACTTCAGCGCGCGCGTCGCGTCCGACGCGCTGCGCATCGTGCGCAT
GAGCCGCGCCACGTTTGAAGTCGTCAAGGAGGCGCCGGTGACGCCCCCAG
CGACGTCGCCCCGCGAGGCGGATGCCGTGGCGGTTGGGCGGGGGGATGGC
GGGGGGTCTACTGCGGGGGGGGAGCGGGGGGGGTCTGGGGGGGTGGGGGG
AGGGGGGGCGTGGGGGGTGGGGGGGGGTGGCTCTGAGAGTGAAGTGCGGA
TTGGAGAGGAAGCTGATGAGCGAGTTGACGAGCAGGGTGAAGAGCAAGTT
GAAGAAGAGGGTGAAGAGAGGAGGTCCACGCGGCGCGCGCAGATGAAGAA
GCCGCTGCTGCCTCGATAG
back to top