mRNA_13345 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|178142
Unique NamemRNA_13345
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|178142 vs. uniprot
Match: A0A835Z9U5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9U5_9STRA)

HSP 1 Score: 247 bits (630), Expect = 7.320e-73
Identity = 476/476 (100.00%), Postives = 476/476 (100.00%), Query Frame = 1 
Query:    1 MRVDESDLSSVSALSLGSSTTHAQGGELTAAPNAALALPTESLRPSLSIRKLALLTELKLHRCNTLTGLPDSIGELTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRVSGRCLRSLPDSICGMPALQWLCISSSPSMARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRLQGLQVGDGLAGLXXXXXGLAALTTLNLQRCGFXXXXXXXXXXXXXXXXEAWLCQRLTRLLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTALSVCEMSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPLLSIINDAARESCYFFRYRDT 1428
            MRVDESDLSSVSALSLGSSTTHAQGGELTAAPNAALALPTESLRPSLSIRKLALLTELKLHRCNTLTGLPDSIGELTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRVSGRCLRSLPDSICGMPALQWLCISSSPSMARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRLQGLQVGDGLAGLXXXXXGLAALTTLNLQRCGFXXXXXXXXXXXXXXXXEAWLCQRLTRLLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTALSVCEMSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPLLSIINDAARESCYFFRYRDT
Sbjct:    1 MRVDESDLSSVSALSLGSSTTHAQGGELTAAPNAALALPTESLRPSLSIRKLALLTELKLHRCNTLTGLPDSIGELTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRVSGRCLRSLPDSICGMPALQWLCISSSPSMARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRLQGLQVGDGLAGLXXXXXGLAALTTLNLQRCGFXXXXXXXXXXXXXXXXEAWLCQRLTRLLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTALSVCEMSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPLLSIINDAARESCYFFRYRDT 476
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BLAST of jgi.p|Trimin1|178142 vs. uniprot
Match: A0A836CLJ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLJ6_9STRA)

HSP 1 Score: 117 bits (293), Expect = 7.150e-25
Identity = 66/72 (91.67%), Postives = 68/72 (94.44%), Query Frame = 1 
Query:    1 MRVDESDLSSVSALSLGSSTTHAQGGELTAAPNAALALPTESLRPSLSIRKLALLTELKLHRCNTLTGLPDS 216
            MRVDESDLSSVSALSLGSSTTHAQG ELTAAP+AALALPTES RPSLSI KLALLTELK+H CNTLTGLPDS
Sbjct:    1 MRVDESDLSSVSALSLGSSTTHAQGRELTAAPHAALALPTESPRPSLSIGKLALLTELKVHSCNTLTGLPDS 72
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|178142 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835Z9U5_9STRA7.320e-73100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CLJ6_9STRA7.150e-2591.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_166contigContig_166:326359..327789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|178142|e_gw1.166.7.1
Hectar predicted targeting categoryother localisation
TranscriptId178464
TrackFilteredModels1
ProteinId178142
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|178142gene_13345Tribonema minus UTEX_B_3156 geneContig_166 326359..327789 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13345_1exon_13345_1Tribonema minus UTEX_B_3156 exonContig_166 326359..327789 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13345CDS_13345Tribonema minus UTEX_B_3156 CDSContig_166 326359..327789 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|178142Trimin1|178142|e_gw1.166.7.1Tribonema minus UTEX_B_3156 polypeptideContig_166 326359..327789 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13345 ID=mRNA_13345|Name=jgi.p|Trimin1|178142|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1431bp|location=Sequence derived from alignment at Contig_166:326359..327789+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTGTCGACGAGTCCGATCTCTCCAGCGTTTCGGCGCTGTCCCTGGG
CTCCTCAACTACGCATGCACAGGGAGGAGAGCTGACAGCAGCCCCAAATG
CGGCACTCGCATTGCCGACCGAATCGCTGCGCCCGTCCCTCAGCATCCGC
AAGCTGGCACTGCTGACAGAACTTAAACTCCACCGCTGCAACACCCTCAC
CGGCCTGCCAGACAGCATTGGCGAGTTGACATCGCTACGCACGCTGGCAG
TGCTGAACTGCGCCAGCCTCAGGAGCCTGCCCGAGAGCATCGGCGACCTT
GCAGCGCTGACAACGCTCAACCTGGGGGACTGCCTCCAGCTCAGTGGCCT
GCCGCAGCGGATCGGCGACTTGACGGCGCTTTCGATACTCGACCTGGCCT
TCTGCCGTGCGCTGCAGAGGCTGCCCGACCGCATTGGCGATCTGGCAGCG
CTCACCGCGCTTGACGTGAACTTCTGCGCTGAGCTCGCGGAGCTTCCAGA
GCGCATCGGCGACCTTGCAGCGCTGACGGTCCTCAATATGCACAGCTGCG
ACGCCCTGGTGACCATTCCGGCGCAAATCGGCAAGCTCGCGGCGTTAACG
TCCCTGCGCGTGTCCGGCAGGTGCCTGCGGAGCCTTCCAGACAGCATCTG
CGGCATGCCGGCGCTTCAATGGCTTTGTATCAGCTCCTCCCCCAGTATGG
CGCGTTTGCCGCACCGCATTGGCGACCTACCCGCACTGGAGCACCTGGAC
GTCCACCTCCACGATAGCATGGAGAGTCTGCCCAGCAGCATCGGAGCGCT
GTCGCGATTGCAGGGGCTTCAAGTCGGTGACGGACTCGCAGGCCTGCCGG
ACAGCATCGGCGGGCTCGCAGCGCTCACGACGCTCAATCTGCAGCGCTGC
GGCTTCGCCGCGCTGCCCGAGAGCATTGGCGCTCTCGCCGCGCTGACGCG
GCTGGAGGCGTGGTTGTGCCAGCGGCTGACGCGCCTGCTGGACTCCATAG
GCAGCCTGACAGCACTCCGCACGCTCGCTCTCTACCATTGCAGAGCGCTG
ACGTGCCTGCCAAACACCATCGGCGGCCTGCTGGCGCTGCGGTCGCTGTG
CCTGCAGGGGTGCGTCGCGCTGGCGTGCCTCCCGGACGCCATCGGAGCGC
TGCAGGCGCTGACAGCGCTCAGCGTCTGCGAAATGAGTCTCACAGCGCTG
CCGGACAGCGTCAGTGACCTGCGGGCTTTGCGCGAGCTTGATGTGAGCTG
GTGCGAGCGGATGGTGACGCTGCCCGATAGGATCAGCAACTTGGCAGCAC
TCAAGAAGCTAGATATCAGCAAAAGCGGCATCCATGGCGTGCCTGAGGGT
GTGGGCGAGCTGCCGCTGCTGAGCATCATAAATGACGCGGCCCGCGAGAG
CTGTTACTTCTTCAGGTATCGTGACACTTAG
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protein sequence of jgi.p|Trimin1|178142

>Trimin1|178142|e_gw1.166.7.1 ID=Trimin1|178142|e_gw1.166.7.1|Name=jgi.p|Trimin1|178142|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=477bp
MRVDESDLSSVSALSLGSSTTHAQGGELTAAPNAALALPTESLRPSLSIR
KLALLTELKLHRCNTLTGLPDSIGELTSLRTLAVLNCASLRSLPESIGDL
AALTTLNLGDCLQLSGLPQRIGDLTALSILDLAFCRALQRLPDRIGDLAA
LTALDVNFCAELAELPERIGDLAALTVLNMHSCDALVTIPAQIGKLAALT
SLRVSGRCLRSLPDSICGMPALQWLCISSSPSMARLPHRIGDLPALEHLD
VHLHDSMESLPSSIGALSRLQGLQVGDGLAGLPDSIGGLAALTTLNLQRC
GFAALPESIGALAALTRLEAWLCQRLTRLLDSIGSLTALRTLALYHCRAL
TCLPNTIGGLLALRSLCLQGCVALACLPDAIGALQALTALSVCEMSLTAL
PDSVSDLRALRELDVSWCERMVTLPDRISNLAALKKLDISKSGIHGVPEG
VGELPLLSIINDAARESCYFFRYRDT*
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mRNA from alignment at Contig_166:326359..327789+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13345 ID=mRNA_13345|Name=jgi.p|Trimin1|178142|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1431bp|location=Sequence derived from alignment at Contig_166:326359..327789+ (Tribonema minus UTEX_B_3156 )
ATGCGTGTCGACGAGTCCGATCTCTCCAGCGTTTCGGCGCTGTCCCTGGG
CTCCTCAACTACGCATGCACAGGGAGGAGAGCTGACAGCAGCCCCAAATG
CGGCACTCGCATTGCCGACCGAATCGCTGCGCCCGTCCCTCAGCATCCGC
AAGCTGGCACTGCTGACAGAACTTAAACTCCACCGCTGCAACACCCTCAC
CGGCCTGCCAGACAGCATTGGCGAGTTGACATCGCTACGCACGCTGGCAG
TGCTGAACTGCGCCAGCCTCAGGAGCCTGCCCGAGAGCATCGGCGACCTT
GCAGCGCTGACAACGCTCAACCTGGGGGACTGCCTCCAGCTCAGTGGCCT
GCCGCAGCGGATCGGCGACTTGACGGCGCTTTCGATACTCGACCTGGCCT
TCTGCCGTGCGCTGCAGAGGCTGCCCGACCGCATTGGCGATCTGGCAGCG
CTCACCGCGCTTGACGTGAACTTCTGCGCTGAGCTCGCGGAGCTTCCAGA
GCGCATCGGCGACCTTGCAGCGCTGACGGTCCTCAATATGCACAGCTGCG
ACGCCCTGGTGACCATTCCGGCGCAAATCGGCAAGCTCGCGGCGTTAACG
TCCCTGCGCGTGTCCGGCAGGTGCCTGCGGAGCCTTCCAGACAGCATCTG
CGGCATGCCGGCGCTTCAATGGCTTTGTATCAGCTCCTCCCCCAGTATGG
CGCGTTTGCCGCACCGCATTGGCGACCTACCCGCACTGGAGCACCTGGAC
GTCCACCTCCACGATAGCATGGAGAGTCTGCCCAGCAGCATCGGAGCGCT
GTCGCGATTGCAGGGGCTTCAAGTCGGTGACGGACTCGCAGGCCTGCCGG
ACAGCATCGGCGGGCTCGCAGCGCTCACGACGCTCAATCTGCAGCGCTGC
GGCTTCGCCGCGCTGCCCGAGAGCATTGGCGCTCTCGCCGCGCTGACGCG
GCTGGAGGCGTGGTTGTGCCAGCGGCTGACGCGCCTGCTGGACTCCATAG
GCAGCCTGACAGCACTCCGCACGCTCGCTCTCTACCATTGCAGAGCGCTG
ACGTGCCTGCCAAACACCATCGGCGGCCTGCTGGCGCTGCGGTCGCTGTG
CCTGCAGGGGTGCGTCGCGCTGGCGTGCCTCCCGGACGCCATCGGAGCGC
TGCAGGCGCTGACAGCGCTCAGCGTCTGCGAAATGAGTCTCACAGCGCTG
CCGGACAGCGTCAGTGACCTGCGGGCTTTGCGCGAGCTTGATGTGAGCTG
GTGCGAGCGGATGGTGACGCTGCCCGATAGGATCAGCAACTTGGCAGCAC
TCAAGAAGCTAGATATCAGCAAAAGCGGCATCCATGGCGTGCCTGAGGGT
GTGGGCGAGCTGCCGCTGCTGAGCATCATAAATGACGCGGCCCGCGAGAG
CTGTTACTTCTTCAGGTATCGTGACACTTAG
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Coding sequence (CDS) from alignment at Contig_166:326359..327789+

>mRNA_13345 ID=mRNA_13345|Name=jgi.p|Trimin1|178142|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1431bp|location=Sequence derived from alignment at Contig_166:326359..327789+ (Tribonema minus UTEX_B_3156 )
ATGCGTGTCGACGAGTCCGATCTCTCCAGCGTTTCGGCGCTGTCCCTGGG
CTCCTCAACTACGCATGCACAGGGAGGAGAGCTGACAGCAGCCCCAAATG
CGGCACTCGCATTGCCGACCGAATCGCTGCGCCCGTCCCTCAGCATCCGC
AAGCTGGCACTGCTGACAGAACTTAAACTCCACCGCTGCAACACCCTCAC
CGGCCTGCCAGACAGCATTGGCGAGTTGACATCGCTACGCACGCTGGCAG
TGCTGAACTGCGCCAGCCTCAGGAGCCTGCCCGAGAGCATCGGCGACCTT
GCAGCGCTGACAACGCTCAACCTGGGGGACTGCCTCCAGCTCAGTGGCCT
GCCGCAGCGGATCGGCGACTTGACGGCGCTTTCGATACTCGACCTGGCCT
TCTGCCGTGCGCTGCAGAGGCTGCCCGACCGCATTGGCGATCTGGCAGCG
CTCACCGCGCTTGACGTGAACTTCTGCGCTGAGCTCGCGGAGCTTCCAGA
GCGCATCGGCGACCTTGCAGCGCTGACGGTCCTCAATATGCACAGCTGCG
ACGCCCTGGTGACCATTCCGGCGCAAATCGGCAAGCTCGCGGCGTTAACG
TCCCTGCGCGTGTCCGGCAGGTGCCTGCGGAGCCTTCCAGACAGCATCTG
CGGCATGCCGGCGCTTCAATGGCTTTGTATCAGCTCCTCCCCCAGTATGG
CGCGTTTGCCGCACCGCATTGGCGACCTACCCGCACTGGAGCACCTGGAC
GTCCACCTCCACGATAGCATGGAGAGTCTGCCCAGCAGCATCGGAGCGCT
GTCGCGATTGCAGGGGCTTCAAGTCGGTGACGGACTCGCAGGCCTGCCGG
ACAGCATCGGCGGGCTCGCAGCGCTCACGACGCTCAATCTGCAGCGCTGC
GGCTTCGCCGCGCTGCCCGAGAGCATTGGCGCTCTCGCCGCGCTGACGCG
GCTGGAGGCGTGGTTGTGCCAGCGGCTGACGCGCCTGCTGGACTCCATAG
GCAGCCTGACAGCACTCCGCACGCTCGCTCTCTACCATTGCAGAGCGCTG
ACGTGCCTGCCAAACACCATCGGCGGCCTGCTGGCGCTGCGGTCGCTGTG
CCTGCAGGGGTGCGTCGCGCTGGCGTGCCTCCCGGACGCCATCGGAGCGC
TGCAGGCGCTGACAGCGCTCAGCGTCTGCGAAATGAGTCTCACAGCGCTG
CCGGACAGCGTCAGTGACCTGCGGGCTTTGCGCGAGCTTGATGTGAGCTG
GTGCGAGCGGATGGTGACGCTGCCCGATAGGATCAGCAACTTGGCAGCAC
TCAAGAAGCTAGATATCAGCAAAAGCGGCATCCATGGCGTGCCTGAGGGT
GTGGGCGAGCTGCCGCTGCTGAGCATCATAAATGACGCGGCCCGCGAGAG
CTGTTACTTCTTCAGGTATCGTGACACTTAG
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