mRNA_13303 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|178195
Unique NamemRNA_13303
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|178195 vs. uniprot
Match: A0A835ZFU1_9STRA (Ankyrin repeat protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFU1_9STRA)

HSP 1 Score: 152 bits (385), Expect = 1.160e-44
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 1 
Query:    1 IAALHWACKGGHTEVVAALLSANAYVNELDKSGCTPLSYCAAWNSKDVAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLKGQRYFGSSPQEKQVGEPRCAVALLRAVPPRSSR 459
            IAALHWACKGGHTEVVAALLSANAYVNELDKSGCTPLSYCAAWNSKDVAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLKGQRYFGSSPQEKQVGEPRCAVALLRAVPPRSSR
Sbjct:    1 IAALHWACKGGHTEVVAALLSANAYVNELDKSGCTPLSYCAAWNSKDVAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLKGQRYFGSSPQEKQVGEPRCAVALLRAVPPRSSR 153
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BLAST of jgi.p|Trimin1|178195 vs. uniprot
Match: A0A836CJG9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJG9_9STRA)

HSP 1 Score: 128 bits (321), Expect = 8.560e-31
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 
Query:    1 MKGDTAILVGARNKQRVGVRNKTCAGVDEGGAKCTTLPTFGMPGGKVAMHCAAHKTPGMVD 183
            MKGDTAILVGARNKQRVGVRNKTCAGVDEGGAKCTTLPTFGMPGGKVAMHCAAHKTPGMVD
Sbjct:    1 MKGDTAILVGARNKQRVGVRNKTCAGVDEGGAKCTTLPTFGMPGGKVAMHCAAHKTPGMVD 61
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BLAST of jgi.p|Trimin1|178195 vs. uniprot
Match: A0A835ZG73_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG73_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.000e-18
Identity = 46/61 (75.41%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    1 MKGDTAILVGARNKQRVGVRNKTCAGVDEGGAKCTTLPTFGMPGGKVAMHCAAHKTPGMVD 183
            MK   AILVGAR+K+RVGVR++ C GVDEGG +CT  PTFGMPG KVA HCAAHKTPGMVD
Sbjct:    1 MKAGNAILVGARSKKRVGVRDRKCVGVDEGGTQCTKRPTFGMPGVKVATHCAAHKTPGMVD 61
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BLAST of jgi.p|Trimin1|178195 vs. uniprot
Match: A0A835ZA00_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA00_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.990e-18
Identity = 45/61 (73.77%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:    1 MKGDTAILVGARNKQRVGVRNKTCAGVDEGGAKCTTLPTFGMPGGKVAMHCAAHKTPGMVD 183
            MK   A LVGAR+K+RV  R +TCAGVDEGGAKC    TFGMPGGKVA HCAAHKTP MVD
Sbjct:    1 MKAGNASLVGARSKKRVKFRKRTCAGVDEGGAKCMKQSTFGMPGGKVATHCAAHKTPAMVD 61
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BLAST of jgi.p|Trimin1|178195 vs. uniprot
Match: A0A835ZAZ1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAZ1_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 7.550e-18
Identity = 43/61 (70.49%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    1 MKGDTAILVGARNKQRVGVRNKTCAGVDEGGAKCTTLPTFGMPGGKVAMHCAAHKTPGMVD 183
            ++ + AILVGAR+K+RVGVR K CAGVDEGG +CT  P+FG+ GGK A HCAAHKTPGMVD
Sbjct:    8 IEANNAILVGARSKKRVGVRYKKCAGVDEGGTQCTKWPSFGVLGGKAATHCAAHKTPGMVD 68
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BLAST of jgi.p|Trimin1|178195 vs. uniprot
Match: A0A835ZA10_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA10_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 8.720e-15
Identity = 41/61 (67.21%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    1 MKGDTAILVGARNKQRVGVRNKTCAGVDEGGAKCTTLPTFGMPGGKVAMHCAAHKTPGMVD 183
            MK D AI VGARNK+         AGVDEGG +CT +P FG+PGGKVA HCAAHKTPGMVD
Sbjct:   21 MKEDNAIFVGARNKKXXXXXXXXXAGVDEGGTQCTKVPYFGVPGGKVATHCAAHKTPGMVD 81
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BLAST of jgi.p|Trimin1|178195 vs. uniprot
Match: A0A835YU96_9STRA (EsV-1-7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU96_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 8.050e-10
Identity = 31/43 (72.09%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:   49 VGVRNKTCAGVDEGGAKCTTLPTFGMPGGKVAMHCAAHKTPGM 177
            V V +K C GVDEGGAKCT  PTFG+PGGK   HCAAHKTP M
Sbjct:    2 VNVTSKKCIGVDEGGAKCTRRPTFGVPGGKADTHCAAHKTPDM 44
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BLAST of jgi.p|Trimin1|178195 vs. uniprot
Match: A0A835Z7B4_9STRA (EsV-1-7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7B4_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 2.360e-5
Identity = 26/38 (68.42%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:   70 CAGVDEGGAKCTTLPTFGMPGGKVAMHCAAHKTPGMVD 183
            CAG DE G +CT  P+FG+ GGK   HCAAHKTPGMVD
Sbjct:    2 CAGADERGTQCTKWPSFGVLGGKPT-HCAAHKTPGMVD 38
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|178195 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZFU1_9STRA1.160e-44100.00Ankyrin repeat protein (Fragment) n=1 Tax=Tribonem... [more]
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BLAST of jgi.p|Trimin1|178195 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A836CJG9_9STRA8.560e-31100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZG73_9STRA1.000e-1875.41Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZA00_9STRA2.990e-1873.77Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZAZ1_9STRA7.550e-1870.49Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZA10_9STRA8.720e-1567.21Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YU96_9STRA8.050e-1072.09EsV-1-7 n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
A0A835Z7B4_9STRA2.360e-568.42EsV-1-7 n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_166contigContig_166:141285..142073 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|178195|e_gw1.166.36.1
Hectar predicted targeting categoryother localisation
TranscriptId178517
TrackFilteredModels1
ProteinId178195
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|178195gene_13303Tribonema minus UTEX_B_3156 geneContig_166 141285..142073 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|178195Trimin1|178195|e_gw1.166.36.1Tribonema minus UTEX_B_3156 polypeptideContig_166 141285..142073 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13303_2exon_13303_2Tribonema minus UTEX_B_3156 exonContig_166 141285..141518 -
exon_13303_1exon_13303_1Tribonema minus UTEX_B_3156 exonContig_166 141846..142073 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13303CDS_13303Tribonema minus UTEX_B_3156 CDSContig_166 141846..142073 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13303 ID=mRNA_13303|Name=jgi.p|Trimin1|178195|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=462bp|location=Sequence derived from alignment at Contig_166:141285..142073- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATCGCAGCACTGCACTGGGCCTGCAAAGGTGGCCACACAGAAGTTGTGGC
GGCGCTGCTCTCGGCGAATGCCTATGTAAACGAGCTAGACAAAAGCGGCT
GCACGCCGCTATCCTACTGCGCTGCCTGGAACAGCAAGGATGTCGCACAG
CTGCTTCTCAGCTGTGGCGCCAGCGTCAACAAGGCTGATACTCACGGAAA
GACTCCACTCATGTGGGCTTCTCACGAGGGTCACCTGGCGATGGCACGTC
TGCTGCTAGCACACGGCGCAGATACCGAAGCGCAAGATGCGCAGGGGCGC
ACTGCTGCTGATATTGCTTATGCGCAAGGGCATCATAAGGTGGAGCAGCT
GCTGCTCAAAGGACAACGTTATTTTGGCAGCAGCCCACAGGAGAAACAGG
TTGGTGAGCCCAGATGCGCCGTCGCTCTGTTGCGGGCAGTGCCGCCCAGG
TCCTCAAGGTGA
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protein sequence of jgi.p|Trimin1|178195

>Trimin1|178195|e_gw1.166.36.1 ID=Trimin1|178195|e_gw1.166.36.1|Name=jgi.p|Trimin1|178195|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=154bp
IAALHWACKGGHTEVVAALLSANAYVNELDKSGCTPLSYCAAWNSKDVAQ
LLLSCGASVNKADTHGKTPLMWASHEGHLAMARLLLAHGADTEAQDAQGR
TAADIAYAQGHHKVEQLLLKGQRYFGSSPQEKQVGEPRCAVALLRAVPPR
SSR*
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mRNA from alignment at Contig_166:141285..142073-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13303 ID=mRNA_13303|Name=jgi.p|Trimin1|178195|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=789bp|location=Sequence derived from alignment at Contig_166:141285..142073- (Tribonema minus UTEX_B_3156 )
ATCGCAGCACTGCACTGGGCCTGCAAAGGTGGCCACACAGAAGTTGTGGC
GGCGCTGCTCTCGGCGAATGCCTATGTAAACGAGCTAGACAAAAGCGGCT
GCACGCCGCTATCCTACTGCGCTGCCTGGAACAGCAAGGATGTCGCACAG
CTGCTTCTCAGCTGTGGCGCCAGCGTCAACAAGGCTGATACTCACGGAAA
GACTCCACTCATGTGGGCTTCTCACGAGGTGAGGCTCTCAGCATAAACTG
CGCTATCTTCGCAACAGATAGATGATTCTTGCTAGCAGTGCTGTCATCAC
TACCCGGCCTCACATCCGACTGCCTCGTGACCTTCTGTCTTGGATGTTGC
ATGGCTTTTTGTAGACTACTGTACGCAGGCATGCACGTGTGGCACGGTCA
CCGCATATGCCGCCATACTTCAACGGTACATCCCTGGAGCGCGCATCACG
TCACATGCTGCACCTTGAGCGCTGCCATGCATGCAGATATAGCGTGCCAC
CGCCAATTTGACGGTTCTTGCTCAAATGCTGCGTCTGACGCCTGCTCACA
TGCAGGGTCACCTGGCGATGGCACGTCTGCTGCTAGCACACGGCGCAGAT
ACCGAAGCGCAAGATGCGCAGGGGCGCACTGCTGCTGATATTGCTTATGC
GCAAGGGCATCATAAGGTGGAGCAGCTGCTGCTCAAAGGACAACGTTATT
TTGGCAGCAGCCCACAGGAGAAACAGGTTGGTGAGCCCAGATGCGCCGTC
GCTCTGTTGCGGGCAGTGCCGCCCAGGTCCTCAAGGTGA
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Coding sequence (CDS) from alignment at Contig_166:141285..142073-

>mRNA_13303 ID=mRNA_13303|Name=jgi.p|Trimin1|178195|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=462bp|location=Sequence derived from alignment at Contig_166:141285..142073- (Tribonema minus UTEX_B_3156 )
ATCGCAGCACTGCACTGGGCCTGCAAAGGTGGCCACACAGAAGTTGTGGC
GGCGCTGCTCTCGGCGAATGCCTATGTAAACGAGCTAGACAAAAGCGGCT
GCACGCCGCTATCCTACTGCGCTGCCTGGAACAGCAAGGATGTCGCACAG
CTGCTTCTCAGCTGTGGCGCCAGCGTCAACAAGGCTGATACTCACGGAAA
GACTCCACTCATGTGGGCTTCTCACGAGGGTCACCTGGCGATGGCACGTC
TGCTGCTAGCACACGGCGCAGATACCGAAGCGCAAGATGCGCAGGGGCGC
ACTGCTGCTGATATTGCTTATGCGCAAGGGCATCATAAGGTGGAGCAGCT
GCTGCTCAAAGGACAACGTTATTTTGGCAGCAGCCCACAGGAGAAACAGG
TTGGTGAGCCCAGATGCGCCGTCGCTCTGTTGCGGGCAGTGCCGCCCAGG
TCCTCAAGGTGA
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