mRNA_1324 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|161917
Unique NamemRNA_1324
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|161917 vs. uniprot
Match: A0A835ZE66_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE66_9STRA)

HSP 1 Score: 302 bits (773), Expect = 1.300e-103
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 1 
Query:    1 MRLDGITDLSDTDVVQLLIDICDIRDARAVVYVYDKMRARRIPLSEQIKQAMRRVEADRGRTPFTLSVPANLAPHLQPSRRIHKTCKGWRIAARNSDASSHVLRAQEWVSTQPAGSLDVRSSAAARMHVAKRLARELHVPLETARGIVTSLKRTGVL 471
            MRLDGITDLSDTDVVQLLIDICDIRDARAVVYVYDKMRARRIPLSEQIKQAMRRVEADRGRTPFTLSVPANLAPHLQPSRRIHKTCKGWRIAARNSDASSHVLRAQEWVSTQPAGSLDVRSSAAARMHVAKRLARELHVPLETARGIVTSLKRTGVL
Sbjct:    1 MRLDGITDLSDTDVVQLLIDICDIRDARAVVYVYDKMRARRIPLSEQIKQAMRRVEADRGRTPFTLSVPANLAPHLQPSRRIHKTCKGWRIAARNSDASSHVLRAQEWVSTQPAGSLDVRSSAAARMHVAKRLARELHVPLETARGIVTSLKRTGVL 157
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161917 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZE66_9STRA1.300e-103100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:704370..704843 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|161917|e_gw1.18.36.1
Hectar predicted targeting categoryother localisation
TranscriptId162239
TrackFilteredModels1
ProteinId161917
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161917gene_1324Tribonema minus UTEX_B_3156 geneContig_18 704370..704843 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1324_1exon_1324_1Tribonema minus UTEX_B_3156 exonContig_18 704370..704843 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1324CDS_1324Tribonema minus UTEX_B_3156 CDSContig_18 704370..704843 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161917Trimin1|161917|e_gw1.18.36.1Tribonema minus UTEX_B_3156 polypeptideContig_18 704370..704843 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1324 ID=mRNA_1324|Name=jgi.p|Trimin1|161917|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=474bp|location=Sequence derived from alignment at Contig_18:704370..704843+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGTTGGACGGCATAACTGACCTGTCTGATACTGATGTTGTTCAGTT
GCTGATTGACATATGTGACATCCGTGATGCAAGGGCTGTAGTCTACGTGT
ATGACAAGATGCGTGCGCGCCGCATTCCACTGTCAGAACAGATCAAACAG
GCAATGAGGAGGGTAGAGGCAGACAGAGGCCGTACACCATTCACTCTTAG
CGTACCTGCAAATCTCGCCCCCCACCTTCAGCCTTCACGCCGCATACATA
AGACATGCAAGGGCTGGCGAATAGCAGCGCGCAACTCGGACGCATCCAGC
CACGTTCTGCGCGCACAGGAGTGGGTGAGCACTCAGCCAGCTGGTAGTCT
TGATGTTCGATCGAGCGCTGCTGCACGAATGCATGTAGCAAAACGTCTTG
CACGTGAGCTGCATGTGCCCCTGGAGACAGCAAGGGGCATAGTGACATCT
CTGAAACGTACAGGAGTATTGTAG
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protein sequence of jgi.p|Trimin1|161917

>Trimin1|161917|e_gw1.18.36.1 ID=Trimin1|161917|e_gw1.18.36.1|Name=jgi.p|Trimin1|161917|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=158bp
MRLDGITDLSDTDVVQLLIDICDIRDARAVVYVYDKMRARRIPLSEQIKQ
AMRRVEADRGRTPFTLSVPANLAPHLQPSRRIHKTCKGWRIAARNSDASS
HVLRAQEWVSTQPAGSLDVRSSAAARMHVAKRLARELHVPLETARGIVTS
LKRTGVL*
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mRNA from alignment at Contig_18:704370..704843+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1324 ID=mRNA_1324|Name=jgi.p|Trimin1|161917|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=474bp|location=Sequence derived from alignment at Contig_18:704370..704843+ (Tribonema minus UTEX_B_3156 )
ATGAGGTTGGACGGCATAACTGACCTGTCTGATACTGATGTTGTTCAGTT
GCTGATTGACATATGTGACATCCGTGATGCAAGGGCTGTAGTCTACGTGT
ATGACAAGATGCGTGCGCGCCGCATTCCACTGTCAGAACAGATCAAACAG
GCAATGAGGAGGGTAGAGGCAGACAGAGGCCGTACACCATTCACTCTTAG
CGTACCTGCAAATCTCGCCCCCCACCTTCAGCCTTCACGCCGCATACATA
AGACATGCAAGGGCTGGCGAATAGCAGCGCGCAACTCGGACGCATCCAGC
CACGTTCTGCGCGCACAGGAGTGGGTGAGCACTCAGCCAGCTGGTAGTCT
TGATGTTCGATCGAGCGCTGCTGCACGAATGCATGTAGCAAAACGTCTTG
CACGTGAGCTGCATGTGCCCCTGGAGACAGCAAGGGGCATAGTGACATCT
CTGAAACGTACAGGAGTATTGTAG
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Coding sequence (CDS) from alignment at Contig_18:704370..704843+

>mRNA_1324 ID=mRNA_1324|Name=jgi.p|Trimin1|161917|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=474bp|location=Sequence derived from alignment at Contig_18:704370..704843+ (Tribonema minus UTEX_B_3156 )
ATGAGGTTGGACGGCATAACTGACCTGTCTGATACTGATGTTGTTCAGTT
GCTGATTGACATATGTGACATCCGTGATGCAAGGGCTGTAGTCTACGTGT
ATGACAAGATGCGTGCGCGCCGCATTCCACTGTCAGAACAGATCAAACAG
GCAATGAGGAGGGTAGAGGCAGACAGAGGCCGTACACCATTCACTCTTAG
CGTACCTGCAAATCTCGCCCCCCACCTTCAGCCTTCACGCCGCATACATA
AGACATGCAAGGGCTGGCGAATAGCAGCGCGCAACTCGGACGCATCCAGC
CACGTTCTGCGCGCACAGGAGTGGGTGAGCACTCAGCCAGCTGGTAGTCT
TGATGTTCGATCGAGCGCTGCTGCACGAATGCATGTAGCAAAACGTCTTG
CACGTGAGCTGCATGTGCCCCTGGAGACAGCAAGGGGCATAGTGACATCT
CTGAAACGTACAGGAGTATTGTAG
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