mRNA_13247 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352399
Unique NamemRNA_13247
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|352399 vs. uniprot
Match: A0A835ZDS4_9STRA (Phosphotriesterase-related protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDS4_9STRA)

HSP 1 Score: 872 bits (2253), Expect = 0.000e+0
Identity = 489/489 (100.00%), Postives = 489/489 (100.00%), Query Frame = 1 
Query:    1 MIPTVLGAVEASSITGAVLCREHLLRDASQGLQDDGDFSLDRLWQIKCDPTASRTNMRLVSVSEAVQEVQAFKDAGGTLIIDTTLRRHRRDAAGLAEISRRTGVAVVAAASCADAYPEEAALGQSYEDAAAADIQYQLLHGVAAALSGGSSTAGSGGEKIQCGVAVVELAGGGDIDAQQRLELERSQWDGAPAAPPYALAAAEVAQLRAAARAQCACAAACAGARPPLLVLVPPFAFAPAARAVLDVLRAVHADVVTATVLCGATAAAARADALRPLLSAGATLCFDAFGRAACDGGADAGPVLPGDAADAALVAALLSDAARGSSXXXXXXXXXAASGPSSAHGRSNIVNGHSGSSSSILGHGSXXXXXXXXGVLLSQGVTQRLHLLRGGGCGYAHVQRSAAPRLRRAGAADAAIAGATRGRALSLLDWFTPPPAVARRREFASCSWCAGAFERIEGEYYSKFAFVYCKVACLRAHRDAGFPVQEPPP 1467
            MIPTVLGAVEASSITGAVLCREHLLRDASQGLQDDGDFSLDRLWQIKCDPTASRTNMRLVSVSEAVQEVQAFKDAGGTLIIDTTLRRHRRDAAGLAEISRRTGVAVVAAASCADAYPEEAALGQSYEDAAAADIQYQLLHGVAAALSGGSSTAGSGGEKIQCGVAVVELAGGGDIDAQQRLELERSQWDGAPAAPPYALAAAEVAQLRAAARAQCACAAACAGARPPLLVLVPPFAFAPAARAVLDVLRAVHADVVTATVLCGATAAAARADALRPLLSAGATLCFDAFGRAACDGGADAGPVLPGDAADAALVAALLSDAARGSSXXXXXXXXXAASGPSSAHGRSNIVNGHSGSSSSILGHGSXXXXXXXXGVLLSQGVTQRLHLLRGGGCGYAHVQRSAAPRLRRAGAADAAIAGATRGRALSLLDWFTPPPAVARRREFASCSWCAGAFERIEGEYYSKFAFVYCKVACLRAHRDAGFPVQEPPP
Sbjct:    1 MIPTVLGAVEASSITGAVLCREHLLRDASQGLQDDGDFSLDRLWQIKCDPTASRTNMRLVSVSEAVQEVQAFKDAGGTLIIDTTLRRHRRDAAGLAEISRRTGVAVVAAASCADAYPEEAALGQSYEDAAAADIQYQLLHGVAAALSGGSSTAGSGGEKIQCGVAVVELAGGGDIDAQQRLELERSQWDGAPAAPPYALAAAEVAQLRAAARAQCACAAACAGARPPLLVLVPPFAFAPAARAVLDVLRAVHADVVTATVLCGATAAAARADALRPLLSAGATLCFDAFGRAACDGGADAGPVLPGDAADAALVAALLSDAARGSSXXXXXXXXXAASGPSSAHGRSNIVNGHSGSSSSILGHGSXXXXXXXXGVLLSQGVTQRLHLLRGGGCGYAHVQRSAAPRLRRAGAADAAIAGATRGRALSLLDWFTPPPAVARRREFASCSWCAGAFERIEGEYYSKFAFVYCKVACLRAHRDAGFPVQEPPP 489
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BLAST of jgi.p|Trimin1|352399 vs. uniprot
Match: A0A662Y8Z7_9STRA (Phosphotriesterase-related protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y8Z7_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 4.190e-15
Identity = 47/108 (43.52%), Postives = 59/108 (54.63%), Query Frame = 1 
Query: 1123 VLLSQGVTQRLHLLRGGGCGYAHVQRSAAPRLRRAGAADAAIAGATRGRALSLLDWFTPPPAVARRREFASCSWCAGAFERIEGEYYSKFAFVYCKVACLRAHRDAGF 1446
            +LLS  V QR+   R GG GY +V     PRL+R G   A      RG A+ LL W+ PP A    + +  C+ C   FE IEGEY++KFAF+YC   CLR H    F
Sbjct:  371 ILLSTNVHQRIQYRRYGGGGYTYVFEYFQPRLQRLGITVAQWDQLVRGNAVELLAWYVPPEAPPIPKNYLQCTICGNFFEPIEGEYFTKFAFIYCSTKCLRRHSRQKF 478
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BLAST of jgi.p|Trimin1|352399 vs. uniprot
Match: D0N4W7_PHYIT (Phosphotriesterase-related protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0N4W7_PHYIT)

HSP 1 Score: 82.8 bits (203), Expect = 1.620e-13
Identity = 44/108 (40.74%), Postives = 57/108 (52.78%), Query Frame = 1 
Query: 1123 VLLSQGVTQRLHLLRGGGCGYAHVQRSAAPRLRRAGAADAAIAGATRGRALSLLDWFTPPPAVARRREFASCSWCAGAFERIEGEYYSKFAFVYCKVACLRAHRDAGF 1446
            +LLS  V QR+   R GG GY ++     PR  R G ++A      R   + LL W+ PP A    + +  CS CA  FE IEGEY++KF F+YC   CLR H    F
Sbjct:  257 LLLSTNVHQRIQYRRYGGGGYTYLFDHFKPRFLRRGVSEAQWEQIVRSNVVDLLAWYEPPEAPPIPKNYLQCSICANYFEPIEGEYFTKFTFIYCGTKCLRRHSRQKF 364
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BLAST of jgi.p|Trimin1|352399 vs. uniprot
Match: A0A485LDY2_9STRA (Phosphotriesterase-related protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LDY2_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 6.480e-13
Identity = 47/108 (43.52%), Postives = 58/108 (53.70%), Query Frame = 1 
Query: 1123 VLLSQGVTQRLHLLRGGGCGYAHVQRSAAPRLRRAGAADAAIAGATRGRALSLLDWFTPPPAVARRREFASCSWCAGAFERIEGEYYSKFAFVYCKVACLRAHRDAGF 1446
            +L++  V+Q +   R GG G  H   S   RL  AG         T    LSLL  +TPPP     +++  CS CA  FE I GEY++KFAFVYC   CLR HR AGF
Sbjct:  289 LLVTSTVSQTIQYTRHGGGGMTHALTSGRARLAAAGVTADQWNAMTNP--LSLLQCYTPPPPAELPKDYLVCSICARPFEPIVGEYFTKFAFVYCSTKCLRKHRIAGF 394
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BLAST of jgi.p|Trimin1|352399 vs. uniprot
Match: W2PXT5_PHYPN (Phosphotriesterase-related protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2PXT5_PHYPN)

HSP 1 Score: 79.0 bits (193), Expect = 4.370e-12
Identity = 44/113 (38.94%), Postives = 57/113 (50.44%), Query Frame = 1 
Query: 1123 VLLSQGVTQRLHLLRGGGCGYAHVQRSAAPRLRRAGAADAAIAGATRGRALSLLDWFTPPPAVARRREFASCSWCAGAFERIEGEYYSKFAFVYCKVACLRAHRDAGFPVQEP 1461
            +LLS  V QR+   R GG GY ++      RL R G ++A      R   + LL W+ PP A    + +  CS C   FE IEGEY++KF F+YC   CLR H    F    P
Sbjct:  318 ILLSTNVHQRIQYRRYGGGGYTYLFEYFKHRLLRQGISEAQWDQIVRTNVVDLLAWYVPPEAPPIPKNYLQCSICEKYFEPIEGEYFTKFTFIYCGTKCLRRHSRQKFAPLPP 430
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BLAST of jgi.p|Trimin1|352399 vs. uniprot
Match: A0A329S0I0_9STRA (Phosphotriesterase-related protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329S0I0_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.090e-11
Identity = 44/113 (38.94%), Postives = 56/113 (49.56%), Query Frame = 1 
Query: 1123 VLLSQGVTQRLHLLRGGGCGYAHVQRSAAPRLRRAGAADAAIAGATRGRALSLLDWFTPPPAVARRREFASCSWCAGAFERIEGEYYSKFAFVYCKVACLRAHRDAGFPVQEP 1461
            +LLS  V QR+   R GG GY ++      RL R G + A      R   + LL W+ PP A    + +  CS C   FE IEGEY++KF F+YC   CLR H    F    P
Sbjct:  329 ILLSTNVHQRIQYRRYGGGGYTYLFEHFKHRLLRQGVSAAQWGLIMRENVVDLLAWYVPPEAPPIPKNYLQCSICEKYFEPIEGEYFTKFTFIYCGTKCLRRHSRQKFAPLPP 441
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BLAST of jgi.p|Trimin1|352399 vs. uniprot
Match: A0A067D4D8_SAPPC (Phosphotriesterase-related protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067D4D8_SAPPC)

HSP 1 Score: 76.6 bits (187), Expect = 1.920e-11
Identity = 46/114 (40.35%), Postives = 60/114 (52.63%), Query Frame = 1 
Query: 1123 VLLSQGVTQRLHLLRGGGCGYAHVQRSAAPRLRRAGAADAAIAGATRGRALSLLDWFTPPPAVARRREFASCSWCAGAFERIEGEYYSKFAFVYCKVACLRAHRDAGF-PVQEP 1461
            VL++  V  +    R GG GY H+  S A R        A +        L+LL  + PPP+    + +  CS C  AFE I GEY++KFAFVYC   CLR HR A F P++EP
Sbjct:  274 VLINSTVHFKTQYTRYGGGGYTHIFASFAARALTTADVRARV---LLHEPLALLAGYVPPPSAEIPKNYIDCSICKTAFEPIVGEYFTKFAFVYCSTKCLRKHRIANFAPLEEP 384
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BLAST of jgi.p|Trimin1|352399 vs. uniprot
Match: A0A484EDX9_BRELC (Phosphotriesterase-related protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EDX9_BRELC)

HSP 1 Score: 72.0 bits (175), Expect = 7.610e-10
Identity = 40/108 (37.04%), Postives = 53/108 (49.07%), Query Frame = 1 
Query: 1123 VLLSQGVTQRLHLLRGGGCGYAHVQRSAAPRLRRAGAADAAIAGATRGRALSLLDWFTPPPAVARRREFASCSWCAGAFERIEGEYYSKFAFVYCKVACLRAHRDAGF 1446
            +LLS  V QR+   R GG GY ++ +     +   G + A      RG  + L  W+ PP      + +  CS C   FE IEGEY+SKF F+YC   CLR H    F
Sbjct:  321 LLLSTNVHQRIQYRRYGGGGYTYLFKYFKTYVLGQGVSAAQWDQIVRGNVVKLWAWYVPPEVPPIPKNYLQCSICEKHFEPIEGEYFSKFTFIYCGTKCLRRHSRQNF 428
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BLAST of jgi.p|Trimin1|352399 vs. uniprot
Match: A0A3M6VL32_9STRA (Phosphotriesterase-related protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VL32_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 4.480e-9
Identity = 40/108 (37.04%), Postives = 52/108 (48.15%), Query Frame = 1 
Query: 1123 VLLSQGVTQRLHLLRGGGCGYAHVQRSAAPRLRRAGAADAAIAGATRGRALSLLDWFTPPPAVARRREFASCSWCAGAFERIEGEYYSKFAFVYCKVACLRAHRDAGF 1446
            +LLS  V QR      GG GYA++      R+ R G          R   + LL W+  P      + +  CS C+  FE IEGEY++KFAF+YC   CLR H    F
Sbjct:  337 MLLSTNVYQRTQYRCYGGGGYAYLFEHFTHRILREGVTATQWNQIVRTNVVDLLAWYVSPEEPPIPKNYQKCSICSNFFEPIEGEYFTKFAFIYCGTKCLRRHSRQKF 444
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BLAST of jgi.p|Trimin1|352399 vs. uniprot
Match: UPI000B4ADE5F (phosphotriesterase-related protein n=2 Tax=unclassified Kineosporia TaxID=2626061 RepID=UPI000B4ADE5F)

HSP 1 Score: 67.4 bits (163), Expect = 1.640e-8
Identity = 48/119 (40.34%), Postives = 60/119 (50.42%), Query Frame = 1 
Query:    4 IPTVLGAVEASSITGAVLCREHLLRDASQGLQ-------DDGDFSL-----DRLWQIKCDPTASRTNMRLVSVSEAVQEVQAFKDAGGTLIIDTTLRRHRRDAAGLAEISRRTGVAVVA 324
            + TVLG V   ++ G  L  EH+L D +           D  D +      D LW ++ DP A+  N RL  V  AV EVQ F D GG  I++ T     RD  GL E+SRRTGV VVA
Sbjct:   16 VETVLGPVPVDAL-GVTLTHEHILNDVTSWAHRTSSPGWDPEDLAHRPVTEDILWDLRQDPFANLDNCRLDDVEVAVAEVQRFADLGGGTIVEATGLGIGRDLEGLREVSRRTGVHVVA 133
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BLAST of jgi.p|Trimin1|352399 vs. uniprot
Match: A0A835ZD09_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD09_9STRA)

HSP 1 Score: 432 bits (1112), Expect = 5.190e-153
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 2 
Query:   26 MEGQEPKKQEHVQQKHARRVHLSPGAAPSPMALLALLRGFENGTFTSRHQERLLRDTELGPRFAKLLQNCSTLTESVVKAQAGSPGVATKYLMCTIGTMCPGPYQEWRSCVMEEADTDSCRRHREDLDNCGADVAQLMMRQCLKDDTSARRTGHVTCAAASCRGAGDARGDGTHARAYTRRILSRAGAESRVSYGRRAARAGDTTRTTRRADGSHQRQRRQ 688
            MEGQEPKKQEHVQQKHARRVHLSPGAAPSPMALLALLRGFENGTFTSRHQERLLRDTELGPRFAKLLQNCSTLTESVVKAQAGSPGVATKYLMCTIGTMCPGPYQEWRSCVMEEADTDSCRRHREDLDNCGADVAQLMMRQCLKDDTSARRTGHVTCAAASCRGAGDARGDGTHARAYTRRILSRAGAESRVSYGRRAARAGDTTRTTRRADGSHQRQRRQ
Sbjct:    1 MEGQEPKKQEHVQQKHARRVHLSPGAAPSPMALLALLRGFENGTFTSRHQERLLRDTELGPRFAKLLQNCSTLTESVVKAQAGSPGVATKYLMCTIGTMCPGPYQEWRSCVMEEADTDSCRRHREDLDNCGADVAQLMMRQCLKDDTSARRTGHVTCAAASCRGAGDARGDGTHARAYTRRILSRAGAESRVSYGRRAARAGDTTRTTRRADGSHQRQRRQ 221
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352399 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A835ZDS4_9STRA0.000e+0100.00Phosphotriesterase-related protein n=1 Tax=Tribone... [more]
A0A662Y8Z7_9STRA4.190e-1543.52Phosphotriesterase-related protein n=2 Tax=Nothoph... [more]
D0N4W7_PHYIT1.620e-1340.74Phosphotriesterase-related protein n=2 Tax=Phytoph... [more]
A0A485LDY2_9STRA6.480e-1343.52Phosphotriesterase-related protein n=1 Tax=Aphanom... [more]
W2PXT5_PHYPN4.370e-1238.94Phosphotriesterase-related protein n=8 Tax=Phytoph... [more]
A0A329S0I0_9STRA1.090e-1138.94Phosphotriesterase-related protein n=2 Tax=Phytoph... [more]
A0A067D4D8_SAPPC1.920e-1140.35Phosphotriesterase-related protein n=1 Tax=Saprole... [more]
A0A484EDX9_BRELC7.610e-1037.04Phosphotriesterase-related protein n=1 Tax=Bremia ... [more]
A0A3M6VL32_9STRA4.480e-937.04Phosphotriesterase-related protein n=1 Tax=Peronos... [more]
UPI000B4ADE5F1.640e-840.34phosphotriesterase-related protein n=2 Tax=unclass... [more]

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BLAST of jgi.p|Trimin1|352399 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZD09_9STRA5.190e-153100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_118contigContig_118:220935..222799 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352399|estExt_Genemark1.C_Ctg_1180022
BRITEko00000
KEGG koko:K07048
Descriptionzinc ion binding
COG categoryS
Max annot lvl4776|Peronosporales
EggNOG OGsCOG1735@1|root,2RDJM@2759|Eukaryota,3QEFP@4776|Peronosporales
Evalue2.58e-14
Seed ortholog4787.PITG_06455T0
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAryldialkylphosphatase
Ec32 orthologEc-27_006880.1
TranscriptId352721
TrackFilteredModels1
ProteinId352399
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352399gene_13247Tribonema minus UTEX_B_3156 geneContig_118 220935..222799 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13247_1exon_13247_1Tribonema minus UTEX_B_3156 exonContig_118 220935..221153 +
exon_13247_2exon_13247_2Tribonema minus UTEX_B_3156 exonContig_118 221529..222799 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13247CDS_13247Tribonema minus UTEX_B_3156 CDSContig_118 220935..221153 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_13247UTR3_13247Tribonema minus UTEX_B_3156 three_prime_UTRContig_118 222780..222799 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352399Trimin1|352399|estExt_Genemark1.C_Ctg_1180022Tribonema minus UTEX_B_3156 polypeptideContig_118 220935..222779 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13247 ID=mRNA_13247|Name=jgi.p|Trimin1|352399|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1490bp|location=Sequence derived from alignment at Contig_118:220935..222799+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCCTACGGTGCTTGGCGCTGTGGAGGCGTCTTCAATCACCGGTGC
AGTGCTGTGCAGAGAGCACCTGCTAAGAGACGCCAGCCAGGGCTTGCAAG
ATGACGGGGACTTCAGCCTGGACAGGCTCTGGCAGATCAAGTGCGATCCA
ACAGCATCCAGGACGAACATGCGCTTGGTGTCTGTCTCGGAGGCGGTGCA
GGAGGTGCAGGCATTCAAGGACGCCGGCGGCACCCTCATCATCGATACCA
CGCTGCGTCGCCACCGCCGCGATGCCGCCGGCCTCGCTGAGATCTCGCGG
CGCACTGGCGTGGCGGTAGTGGCGGCCGCGTCGTGCGCGGATGCGTATCC
GGAGGAGGCAGCGCTCGGGCAGAGCTACGAGGACGCCGCAGCAGCGGACA
TTCAATATCAGCTGTTGCACGGCGTAGCGGCGGCATTAAGCGGCGGCAGC
AGCACCGCCGGCAGCGGCGGCGAAAAGATACAGTGCGGCGTGGCCGTGGT
GGAGCTGGCGGGAGGCGGCGACATCGACGCGCAGCAGCGGTTGGAGCTGG
AACGCTCACAGTGGGACGGCGCGCCGGCGGCGCCTCCGTATGCGCTGGCG
GCGGCGGAGGTCGCGCAGCTGCGGGCGGCCGCGCGCGCGCAGTGCGCGTG
CGCCGCCGCGTGCGCCGGTGCGCGGCCGCCGCTGCTCGTGCTGGTGCCGC
CCTTCGCGTTTGCGCCGGCGGCGCGCGCCGTTCTGGACGTGCTGCGTGCG
GTTCACGCGGACGTCGTCACGGCGACGGTGCTGTGCGGCGCGACGGCGGC
GGCGGCGCGCGCGGACGCGCTGCGGCCGCTGCTGAGCGCTGGCGCGACAC
TGTGCTTCGATGCCTTTGGCCGAGCAGCGTGCGACGGCGGCGCCGACGCC
GGCCCCGTCCTGCCCGGCGACGCCGCTGACGCTGCGCTCGTTGCAGCGCT
GCTGTCCGATGCTGCGCGCGGCAGCAGCGGCAATGGCGGCACTGGCCAGG
ACGGCGCTGCCAGCGGACCCAGCAGTGCTCACGGCCGCAGCAACATCGTC
AATGGCCATAGCGGCAGCAGCAGCAGCATCTTAGGCCATGGCAGCGGCGG
CAGCGGCGGCGGCAGCGGCGGCGTGCTGCTGTCGCAAGGCGTGACGCAGC
GGCTGCACCTCCTGCGCGGCGGCGGCTGCGGCTACGCGCATGTGCAGCGC
TCCGCGGCGCCGCGCCTGCGCCGCGCGGGCGCCGCCGACGCCGCCATCGC
CGGCGCGACGCGCGGCCGCGCGCTGTCGCTGCTCGACTGGTTCACGCCGC
CGCCGGCGGTCGCGCGGCGCCGCGAGTTTGCGTCCTGCAGCTGGTGCGCC
GGCGCGTTTGAGCGCATAGAGGGCGAGTACTACAGCAAGTTTGCGTTTGT
GTACTGCAAGGTCGCGTGCCTGCGCGCGCACCGCGACGCTGGGTTTCCCG
TGCAAGAGCCGCCGCCGTAATGTCACGTGCTCCGCCGCTG
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protein sequence of jgi.p|Trimin1|352399

>Trimin1|352399|estExt_Genemark1.C_Ctg_1180022 ID=Trimin1|352399|estExt_Genemark1.C_Ctg_1180022|Name=jgi.p|Trimin1|352399|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=490bp
MIPTVLGAVEASSITGAVLCREHLLRDASQGLQDDGDFSLDRLWQIKCDP
TASRTNMRLVSVSEAVQEVQAFKDAGGTLIIDTTLRRHRRDAAGLAEISR
RTGVAVVAAASCADAYPEEAALGQSYEDAAAADIQYQLLHGVAAALSGGS
STAGSGGEKIQCGVAVVELAGGGDIDAQQRLELERSQWDGAPAAPPYALA
AAEVAQLRAAARAQCACAAACAGARPPLLVLVPPFAFAPAARAVLDVLRA
VHADVVTATVLCGATAAAARADALRPLLSAGATLCFDAFGRAACDGGADA
GPVLPGDAADAALVAALLSDAARGSSGNGGTGQDGAASGPSSAHGRSNIV
NGHSGSSSSILGHGSGGSGGGSGGVLLSQGVTQRLHLLRGGGCGYAHVQR
SAAPRLRRAGAADAAIAGATRGRALSLLDWFTPPPAVARRREFASCSWCA
GAFERIEGEYYSKFAFVYCKVACLRAHRDAGFPVQEPPP*
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mRNA from alignment at Contig_118:220935..222799+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13247 ID=mRNA_13247|Name=jgi.p|Trimin1|352399|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1865bp|location=Sequence derived from alignment at Contig_118:220935..222799+ (Tribonema minus UTEX_B_3156 )
ATGATTCCTACGGTGCTTGGCGCTGTGGAGGCGTCTTCAATCACCGGTGC
AGTGCTGTGCAGAGAGCACCTGCTAAGAGACGCCAGCCAGGGCTTGCAAG
ATGACGGGGACTTCAGCCTGGACAGGCTCTGGCAGATCAAGTGCGATCCA
ACAGCATCCAGGACGAACATGCGCTTGGTGTCTGTCTCGGAGGCGGTGCA
GGAGGTGCAGGCATTCAAGGTGCGTTGCTGGTTGAGCTCCCGTACCTTCC
GACGGGCAGAGCGCTGATTGTGAAGTTGAAGCCTGTGTGAGGAAGGGTCA
TGTCTTAAATTAGTCTTCATGTTGGACTTAGTGATGAACCTAGTGTAGTC
AGGGATGAGAGTTGCAGCATGAACATCATGTGCGCAATGTTCAGCAACGG
TGGAGCCAGTGCAGCCTTGCTTTTGGTGAGCAGGAGCGCATGACCCGCGA
TGGCCATAGACACATGCATGCAACCTCGATCCGTCGAAGGCACCACACCG
TCGAAGGCACCACACAAGGCACGAGCTTCAGTAAGACCATCAGGTCACTT
CACAACCGCACTTCATGTCTGACTGTTACGCACTCATAGCGCAGGACGCC
GGCGGCACCCTCATCATCGATACCACGCTGCGTCGCCACCGCCGCGATGC
CGCCGGCCTCGCTGAGATCTCGCGGCGCACTGGCGTGGCGGTAGTGGCGG
CCGCGTCGTGCGCGGATGCGTATCCGGAGGAGGCAGCGCTCGGGCAGAGC
TACGAGGACGCCGCAGCAGCGGACATTCAATATCAGCTGTTGCACGGCGT
AGCGGCGGCATTAAGCGGCGGCAGCAGCACCGCCGGCAGCGGCGGCGAAA
AGATACAGTGCGGCGTGGCCGTGGTGGAGCTGGCGGGAGGCGGCGACATC
GACGCGCAGCAGCGGTTGGAGCTGGAACGCTCACAGTGGGACGGCGCGCC
GGCGGCGCCTCCGTATGCGCTGGCGGCGGCGGAGGTCGCGCAGCTGCGGG
CGGCCGCGCGCGCGCAGTGCGCGTGCGCCGCCGCGTGCGCCGGTGCGCGG
CCGCCGCTGCTCGTGCTGGTGCCGCCCTTCGCGTTTGCGCCGGCGGCGCG
CGCCGTTCTGGACGTGCTGCGTGCGGTTCACGCGGACGTCGTCACGGCGA
CGGTGCTGTGCGGCGCGACGGCGGCGGCGGCGCGCGCGGACGCGCTGCGG
CCGCTGCTGAGCGCTGGCGCGACACTGTGCTTCGATGCCTTTGGCCGAGC
AGCGTGCGACGGCGGCGCCGACGCCGGCCCCGTCCTGCCCGGCGACGCCG
CTGACGCTGCGCTCGTTGCAGCGCTGCTGTCCGATGCTGCGCGCGGCAGC
AGCGGCAATGGCGGCACTGGCCAGGACGGCGCTGCCAGCGGACCCAGCAG
TGCTCACGGCCGCAGCAACATCGTCAATGGCCATAGCGGCAGCAGCAGCA
GCATCTTAGGCCATGGCAGCGGCGGCAGCGGCGGCGGCAGCGGCGGCGTG
CTGCTGTCGCAAGGCGTGACGCAGCGGCTGCACCTCCTGCGCGGCGGCGG
CTGCGGCTACGCGCATGTGCAGCGCTCCGCGGCGCCGCGCCTGCGCCGCG
CGGGCGCCGCCGACGCCGCCATCGCCGGCGCGACGCGCGGCCGCGCGCTG
TCGCTGCTCGACTGGTTCACGCCGCCGCCGGCGGTCGCGCGGCGCCGCGA
GTTTGCGTCCTGCAGCTGGTGCGCCGGCGCGTTTGAGCGCATAGAGGGCG
AGTACTACAGCAAGTTTGCGTTTGTGTACTGCAAGGTCGCGTGCCTGCGC
GCGCACCGCGACGCTGGGTTTCCCGTGCAAGAGCCGCCGCCGTAATGTCA
CGTGCTCCGCCGCTG
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Coding sequence (CDS) from alignment at Contig_118:220935..222799+

>mRNA_13247 ID=mRNA_13247|Name=jgi.p|Trimin1|352399|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1470bp|location=Sequence derived from alignment at Contig_118:220935..222799+ (Tribonema minus UTEX_B_3156 )
ATGATTCCTACGGTGCTTGGCGCTGTGGAGGCGTCTTCAATCACCGGTGC
AGTGCTGTGCAGAGAGCACCTGCTAAGAGACGCCAGCCAGGGCTTGCAAG
ATGACGGGGACTTCAGCCTGGACAGGCTCTGGCAGATCAAGTGCGATCCA
ACAGCATCCAGGACGAACATGCGCTTGGTGTCTGTCTCGGAGGCGGTGCA
GGAGGTGCAGGCATTCAAGGACGCCGGCGGCACCCTCATCATCGATACCA
CGCTGCGTCGCCACCGCCGCGATGCCGCCGGCCTCGCTGAGATCTCGCGG
CGCACTGGCGTGGCGGTAGTGGCGGCCGCGTCGTGCGCGGATGCGTATCC
GGAGGAGGCAGCGCTCGGGCAGAGCTACGAGGACGCCGCAGCAGCGGACA
TTCAATATCAGCTGTTGCACGGCGTAGCGGCGGCATTAAGCGGCGGCAGC
AGCACCGCCGGCAGCGGCGGCGAAAAGATACAGTGCGGCGTGGCCGTGGT
GGAGCTGGCGGGAGGCGGCGACATCGACGCGCAGCAGCGGTTGGAGCTGG
AACGCTCACAGTGGGACGGCGCGCCGGCGGCGCCTCCGTATGCGCTGGCG
GCGGCGGAGGTCGCGCAGCTGCGGGCGGCCGCGCGCGCGCAGTGCGCGTG
CGCCGCCGCGTGCGCCGGTGCGCGGCCGCCGCTGCTCGTGCTGGTGCCGC
CCTTCGCGTTTGCGCCGGCGGCGCGCGCCGTTCTGGACGTGCTGCGTGCG
GTTCACGCGGACGTCGTCACGGCGACGGTGCTGTGCGGCGCGACGGCGGC
GGCGGCGCGCGCGGACGCGCTGCGGCCGCTGCTGAGCGCTGGCGCGACAC
TGTGCTTCGATGCCTTTGGCCGAGCAGCGTGCGACGGCGGCGCCGACGCC
GGCCCCGTCCTGCCCGGCGACGCCGCTGACGCTGCGCTCGTTGCAGCGCT
GCTGTCCGATGCTGCGCGCGGCAGCAGCGGCAATGGCGGCACTGGCCAGG
ACGGCGCTGCCAGCGGACCCAGCAGTGCTCACGGCCGCAGCAACATCGTC
AATGGCCATAGCGGCAGCAGCAGCAGCATCTTAGGCCATGGCAGCGGCGG
CAGCGGCGGCGGCAGCGGCGGCGTGCTGCTGTCGCAAGGCGTGACGCAGC
GGCTGCACCTCCTGCGCGGCGGCGGCTGCGGCTACGCGCATGTGCAGCGC
TCCGCGGCGCCGCGCCTGCGCCGCGCGGGCGCCGCCGACGCCGCCATCGC
CGGCGCGACGCGCGGCCGCGCGCTGTCGCTGCTCGACTGGTTCACGCCGC
CGCCGGCGGTCGCGCGGCGCCGCGAGTTTGCGTCCTGCAGCTGGTGCGCC
GGCGCGTTTGAGCGCATAGAGGGCGAGTACTACAGCAAGTTTGCGTTTGT
GTACTGCAAGGTCGCGTGCCTGCGCGCGCACCGCGACGCTGGGTTTCCCG
TGCAAGAGCCGCCGCCGTAA
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