mRNA_13226 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|174853 vs. uniprot
Match: A0A835ZFE8_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFE8_9STRA) HSP 1 Score: 467 bits (1201), Expect = 4.020e-166 Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 1 Query: 1 MADAAAAEGSSGKKWFPLESNPDVMTRYIERLGFDTSRHAFVDVLSTDDWALDMVPQPALAVLMLFPVKAASEAHRAEEAARIEREGQVVSPDVYYMKQTVGNACGTVGLLHAVGNAATKANDSFLSRFLARTRGQTPDAIATVLAEDTELEETHGAAAAEGQSAAPALDEDVTTHFVCFVEVGGRLYELDGRKRSPIDHGATTPAALLRDAARVVRAFMARDPEELRFTIVALAPLADE 720 MADAAAAEGSSGKKWFPLESNPDVMTRYIERLGFDTSRHAFVDVLSTDDWALDMVPQPALAVLMLFPVKAASEAHRAEEAARIEREGQVVSPDVYYMKQTVGNACGTVGLLHAVGNAATKANDSFLSRFLARTRGQTPDAIATVLAEDTELEETHGAAAAEGQSAAPALDEDVTTHFVCFVEVGGRLYELDGRKRSPIDHGATTPAALLRDAARVVRAFMARDPEELRFTIVALAPLADE Sbjct: 1 MADAAAAEGSSGKKWFPLESNPDVMTRYIERLGFDTSRHAFVDVLSTDDWALDMVPQPALAVLMLFPVKAASEAHRAEEAARIEREGQVVSPDVYYMKQTVGNACGTVGLLHAVGNAATKANDSFLSRFLARTRGQTPDAIATVLAEDTELEETHGAAAAEGQSAAPALDEDVTTHFVCFVEVGGRLYELDGRKRSPIDHGATTPAALLRDAARVVRAFMARDPEELRFTIVALAPLADE 240
BLAST of jgi.p|Trimin1|174853 vs. uniprot
Match: A0A7S1C7C4_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C7C4_9STRA) HSP 1 Score: 284 bits (726), Expect = 4.630e-93 Identity = 150/242 (61.98%), Postives = 176/242 (72.73%), Query Frame = 1 Query: 13 AAAEGSSGKK---WFPLESNPDVMTRYIERLGFDTSRHAFVDVLSTDDWALDMVPQPALAVLMLFPVKAASEAHRAEEAARIEREGQVVSPDVYYMKQTVGNACGTVGLLHAVGNAATKAN--------DSFLSRFLARTRGQTPDAIATVLAEDTELEETHGAAAAEGQSAAPALDEDVTTHFVCFVEVGGRLYELDGRKRSPIDHGATTPAALLRDAARVVRAFMARDPEELRFTIVALA 705 A AEG K+ WFPLESNP VM +Y+E+LGF T + V+V+STDDWALDMVP+P + V+MLFPVK ASE HR EEAARI EGQ + +VYY KQTVGNACGT+GLLH NA + A DS+L RFLART+ TPD A L +D ELEE+HGAAA+EGQ+ P +DE V HFV F V G+L ELDGRK+SPI HG TTP LL DA +VVR FMARDP+E+RFTIVALA Sbjct: 43 APAEGGKKKRKKRWFPLESNPHVMNKYLEKLGFPTMMYHTVEVMSTDDWALDMVPKPVIGVVMLFPVKDASEKHRHEEAARIAAEGQDLPAEVYYTKQTVGNACGTIGLLHVAANATSFAGSDLVPLGEDSWLYRFLARTKDMTPDERAAALEDDDELEESHGAAASEGQTTVPDIDESVNAHFVAFSNVKGKLVELDGRKKSPIVHGDTTPETLLADACKVVRDFMARDPDEVRFTIVALA 284
BLAST of jgi.p|Trimin1|174853 vs. uniprot
Match: A0A8K1FQY3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FQY3_PYTOL) HSP 1 Score: 277 bits (708), Expect = 4.910e-91 Identity = 143/237 (60.34%), Postives = 175/237 (73.84%), Query Frame = 1 Query: 22 EGSSGKKWFPLESNPDVMTRYIERLGFDTSRHAFVDVLSTDDWALDMVPQPALAVLMLFPVKAASEAHRAEEAARIEREGQVVSPDVYYMKQTVGNACGTVGLLHAVGNA---ATKANDSFLSRFLARTRGQTPDAIATVLAEDTELEETHGAAAAEGQSA-APALDEDVTTHFVCFVEVGGRLYELDGRKRSPIDHGATTPAALLRDAARVVRAFMARDPEELRFTIVALAPLADE 720 +G GK+WFPLESNP VM Y+E+LGF TS +F DVLST+DWALDMVP+P + VLMLFP+K +EA EEAARIE++GQVVSP VYYMKQTVGNACGT+GLLHA+GN T S+L + +T GQTPD IA L ED ELE+TH +AA EGQS +D+ V THF+CF V G LYELDGRK+ PI+HG ++ LL DA +V++ FM RD E+RFTI+ALA AD+ Sbjct: 4 DGHGGKRWFPLESNPAVMNTYVEKLGFPTSDFSFCDVLSTEDWALDMVPKPVVGVLMLFPIKKHTEAFAKEEAARIEKDGQVVSPHVYYMKQTVGNACGTIGLLHAIGNMRQHVTIPATSYLGKLFNQTVGQTPDKIADYLEEDDELEDTHESAAQEGQSEQVEDVDDPVDTHFICFSCVDGHLYELDGRKKFPINHGPSSQETLLSDACKVIQQFMVRDEGEVRFTILALAKTADD 240
BLAST of jgi.p|Trimin1|174853 vs. uniprot
Match: A0A6G0W7W6_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W7W6_9STRA) HSP 1 Score: 273 bits (698), Expect = 1.680e-89 Identity = 143/237 (60.34%), Postives = 175/237 (73.84%), Query Frame = 1 Query: 10 AAAAEGSSGKKWFPLESNPDVMTRYIERLGF-DTSRHAFVDVLSTDDWALDMVPQPALAVLMLFPVKAASEAHRAEEAARIEREGQVVSPDVYYMKQTVGNACGTVGLLHAVGNAA---TKANDSFLSRFLARTRGQTPDAIATVLAEDTELEETHGAAAAEGQSAA-PALDEDVTTHFVCFVEVGGRLYELDGRKRSPIDHGATTPAALLRDAARVVRAFMARDPEELRFTIVALA 705 A+ EGS KKWFPLESNP VM YI+R+G + + + F DV ST+DWAL+MV +P LAV++LFP+K ASE H E+ RIEREGQVVS +VYYMKQTVGNACGTVG+LHA+GNA SFL+ F +T G+TPD IA +L +D ELEETH +AA EGQS +D+ + THFVCF V G LYELDGRK+ PI+HG ++P LL DA RV++ FMARD E+RFTIVALA Sbjct: 2 ASDEEGSGNKKWFPLESNPQVMNEYIKRMGVAEDAEYGFCDVYSTEDWALEMVLRPVLAVVLLFPIKPASEEHTKEQRGRIEREGQVVSDNVYYMKQTVGNACGTVGILHALGNARHVLPPRPGSFLATFFDKTHGKTPDEIAEILEDDDELEETHASAAQEGQSEQLEHVDDPINTHFVCFSTVEGHLYELDGRKQFPINHGPSSPETLLEDACRVIKEFMARDEGEVRFTIVALA 238
BLAST of jgi.p|Trimin1|174853 vs. uniprot
Match: A0A1V9YLF7_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YLF7_9STRA) HSP 1 Score: 266 bits (681), Expect = 6.180e-87 Identity = 143/233 (61.37%), Postives = 168/233 (72.10%), Query Frame = 1 Query: 37 KKWFPLESNPDVMTRYIERLGFDT-SRHAFVDVLSTDDWALDMVPQPALAVLMLFPVKAASEAHRAEEAARIEREGQVVSPDVYYMKQTVGNACGTVGLLHAVGNAA---TKANDSFLSRFLARTRGQTPDAIATVLAEDTELEETHGAAAAEGQS-AAPALDEDVTTHFVCFVEVGGRLYELDGRKRSPIDHGATTPAALLRDAARVVRAFMARDPEELRFTIVALAPLADE 720 K+WFPLESNP VM YI+R+G S F DV ST+DWALDMVP+P LAV+MLFP+KA +EA+ E RIE+ GQ VSP+VYYMKQTVGNACGTVG+LHA+GNA T + SFL F A+TR +TP IA +L ED ELEETH +AA EGQS +D+ + THFVC V G LYELDGRK PI+HG ++ A LL DA RVVR FM RD E+RFTIVALA DE Sbjct: 10 KRWFPLESNPAVMNEYIKRMGLPADSAFEFCDVYSTEDWALDMVPRPVLAVIMLFPIKAHTEAYAKAEHERIEKNGQAVSPNVYYMKQTVGNACGTVGILHALGNAGEHMTFTHGSFLQSFFAKTRDKTPAEIAEILEEDDELEETHASAAQEGQSDQLEHIDDPINTHFVCLSVVDGHLYELDGRKAFPINHGPSSSATLLEDACRVVRDFMQRDEGEVRFTIVALAKTPDE 242
BLAST of jgi.p|Trimin1|174853 vs. uniprot
Match: M4BQF5_HYAAE (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BQF5_HYAAE) HSP 1 Score: 264 bits (675), Expect = 4.560e-86 Identity = 135/230 (58.70%), Postives = 171/230 (74.35%), Query Frame = 1 Query: 37 KKWFPLESNPDVMTRYIERLGFDTSRHAFVDVLSTDDWALDMVPQPALAVLMLFPVKAASEAHRAEEAARIEREGQVVSPDVYYMKQTVGNACGTVGLLHAVGNA---ATKANDSFLSRFLARTRGQTPDAIATVLAEDTELEETHGAAAAEGQSAA-PALDEDVTTHFVCFVEVGGRLYELDGRKRSPIDHGATTPAALLRDAARVVRAFMARDPEELRFTIVALAPLA 714 K+WFPLESNPDVM Y++++GF TS+ +F DVLST++WAL MV P +AVLMLFP+K +E +EAARIE+EGQ VSPDVYYM+QTVGNACGTVG+LHAVGN A S+L +F T+ +TP IA L ED ELE+THG AA GQS ++D+ + THFVCF V G LYELDGRK+SPI+HG ++ +L+DA +V++ FMARD E+RFTI+ALA A Sbjct: 8 KRWFPLESNPDVMNAYVKKMGFPTSQFSFCDVLSTEEWALGMVSTPIVAVLMLFPIKPHTEEADKQEAARIEKEGQTVSPDVYYMRQTVGNACGTVGILHAVGNMRHLVQLAPGSYLDKFFNTTKTKTPQEIAQYLEEDDELEKTHGGAAEAGQSEQLQSVDDPINTHFVCFSCVDGNLYELDGRKKSPINHGPSSQETILQDACKVIKKFMARDENEMRFTILALAKTA 237
BLAST of jgi.p|Trimin1|174853 vs. uniprot
Match: A0A3F2RNT3_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RNT3_9STRA) HSP 1 Score: 264 bits (675), Expect = 4.710e-86 Identity = 133/233 (57.08%), Postives = 168/233 (72.10%), Query Frame = 1 Query: 28 SSGKKWFPLESNPDVMTRYIERLGFDTSRHAFVDVLSTDDWALDMVPQPALAVLMLFPVKAASEAHRAEEAARIEREGQVVSPDVYYMKQTVGNACGTVGLLHAVGNAATKAN---DSFLSRFLARTRGQTPDAIATVLAEDTELEETHGAAAAEGQSAA-PALDEDVTTHFVCFVEVGGRLYELDGRKRSPIDHGATTPAALLRDAARVVRAFMARDPEELRFTIVALAPLA 714 S K+WFPLESNPDVM Y+E++GF T + +F DVLST++WAL MVP P +AV+MLFP+K +E +EA RIEREGQ VSP+VYYM+QTVGNACGTVG+LHA+GN S+L +F +T+ +TP IA L ED ELEETHG+AA GQS +D+ + THFVCF V G LYELDGRK+ PI+HG ++P +L DA ++ FMARD E+RFTI+ALA A Sbjct: 6 SKPKRWFPLESNPDVMNNYVEKMGFPTDQFSFCDVLSTEEWALGMVPSPVVAVIMLFPIKPHTEEAAKQEAVRIEREGQTVSPNVYYMRQTVGNACGTVGILHAIGNMRHLVQLTPGSYLDKFFNKTKTKTPKEIAQYLEEDDELEETHGSAAEAGQSEQLETVDDPINTHFVCFSHVDGHLYELDGRKKHPINHGPSSPTTVLPDACAEIKKFMARDEGEMRFTILALAKTA 238
BLAST of jgi.p|Trimin1|174853 vs. uniprot
Match: W4GMT7_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GMT7_9STRA) HSP 1 Score: 264 bits (675), Expect = 5.030e-86 Identity = 138/236 (58.47%), Postives = 171/236 (72.46%), Query Frame = 1 Query: 13 AAAEGSSGKKWFPLESNPDVMTRYIERLGF-DTSRHAFVDVLSTDDWALDMVPQPALAVLMLFPVKAASEAHRAEEAARIEREGQVVSPDVYYMKQTVGNACGTVGLLHAVGNAAT---KANDSFLSRFLARTRGQTPDAIATVLAEDTELEETHGAAAAEGQSAA-PALDEDVTTHFVCFVEVGGRLYELDGRKRSPIDHGATTPAALLRDAARVVRAFMARDPEELRFTIVALA 705 AAA + K+WFPLESNP VM YI R+G + + AF DV STDDWAL+MV +P L V+MLFP+K A+E H +E RIE++GQ+VS +VYYMKQTVGNACGTVG+LHA+GNA + SFLS F ++T G+TPD IA +L D E+EETH +AA +GQS +D+ + THFVCF V G LYELDGRK PI+HG ++P LL DA V+R FMARD E+RFTIVALA Sbjct: 2 AAATTTKAKRWFPLESNPQVMNEYIRRMGIAEDAEFAFCDVYSTDDWALEMVLRPVLGVVMLFPIKPATEDHAKQERERIEKDGQIVSKNVYYMKQTVGNACGTVGILHALGNARDYLPPRHGSFLSSFFSKTDGKTPDEIAAILQADDEIEETHASAAQDGQSEQLEHVDDPINTHFVCFSVVDGHLYELDGRKEFPINHGPSSPETLLGDACAVIRQFMARDEGEVRFTIVALA 237
BLAST of jgi.p|Trimin1|174853 vs. uniprot
Match: A0A024UT19_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UT19_9STRA) HSP 1 Score: 264 bits (674), Expect = 6.680e-86 Identity = 135/231 (58.44%), Postives = 170/231 (73.59%), Query Frame = 1 Query: 28 SSGKKWFPLESNPDVMTRYIERLGF-DTSRHAFVDVLSTDDWALDMVPQPALAVLMLFPVKAASEAHRAEEAARIEREGQVVSPDVYYMKQTVGNACGTVGLLHAVGNAAT---KANDSFLSRFLARTRGQTPDAIATVLAEDTELEETHGAAAAEGQSAA-PALDEDVTTHFVCFVEVGGRLYELDGRKRSPIDHGATTPAALLRDAARVVRAFMARDPEELRFTIVALA 705 S K+WFPLESNP VM YI R+G + + AF D+ STD+WAL+MV +P L V+MLFP+K SE H E+ RIE+EGQ+VSP+VY+MKQTVGNACGTVG+LHA+GNA + SFLS F ++T G+TPD IA +L +D E+EETH +AA EGQS +D+ + THFVCF V G LYELDGRK+ P++HG ++ LL DA RV+R FMARD E+RFTIVALA Sbjct: 5 SKAKRWFPLESNPQVMNEYIRRMGIPEDADFAFCDLYSTDEWALEMVLRPVLGVVMLFPIKPVSELHAKEQLERIEKEGQIVSPNVYFMKQTVGNACGTVGILHALGNAKDYLPPRDGSFLSSFFSKTVGKTPDEIAAILQDDDEIEETHASAAQEGQSEQLERVDDPINTHFVCFSVVDGHLYELDGRKKFPVNHGPSSQETLLEDACRVIRQFMARDEGEVRFTIVALA 235
BLAST of jgi.p|Trimin1|174853 vs. uniprot
Match: H3H379_PHYRM (Ubiquitin carboxyl-terminal hydrolase n=15 Tax=Phytophthora TaxID=4783 RepID=H3H379_PHYRM) HSP 1 Score: 263 bits (673), Expect = 9.480e-86 Identity = 131/237 (55.27%), Postives = 175/237 (73.84%), Query Frame = 1 Query: 22 EGSSGKKWFPLESNPDVMTRYIERLGFDTSRHAFVDVLSTDDWALDMVPQPALAVLMLFPVKAASEAHRAEEAARIEREGQVVSPDVYYMKQTVGNACGTVGLLHAVGNAATKAN---DSFLSRFLARTRGQTPDAIATVLAEDTELEETHGAAAAEGQSAA-PALDEDVTTHFVCFVEVGGRLYELDGRKRSPIDHGATTPAALLRDAARVVRAFMARDPEELRFTIVALAPLADE 720 EG+ K+WFPLESNP+VM Y+E++GF T+ +F DVLST++WAL MVP P +AV+MLFP+K +E +EA RIE++GQ++SP+VYYM+QTVGNACGTVG+LHA+GN S+L +F T+ +TP+ IA L ED ELEETHG+AA GQS ++D+ + THFVCF V G LYELDGRK+ PI+HG ++P LL+DA + ++ FMARD E+RFTI+ALA A + Sbjct: 4 EGNKHKRWFPLESNPEVMNAYVEKMGFPTTAFSFCDVLSTEEWALAMVPSPVVAVIMLFPIKPHTEEADKQEAKRIEKDGQIMSPNVYYMRQTVGNACGTVGILHAIGNMRHLVRLTPGSYLDKFFNTTKTKTPEEIAQYLEEDDELEETHGSAAEAGQSEQLESVDDPINTHFVCFSCVDGTLYELDGRKKRPINHGPSSPDTLLQDACQAIKKFMARDEGEMRFTILALAKTATD 240 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174853 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13226 ID=mRNA_13226|Name=jgi.p|Trimin1|174853|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=723bp|location=Sequence derived from alignment at Contig_118:48004..50293+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGCGGACGCGGCAGCGGCGGAGGGCAGCAGCGGCAAGAAGTGGTTCCCback to top protein sequence of jgi.p|Trimin1|174853 >Trimin1|174853|e_gw1.118.46.1 ID=Trimin1|174853|e_gw1.118.46.1|Name=jgi.p|Trimin1|174853|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=241bp MADAAAAEGSSGKKWFPLESNPDVMTRYIERLGFDTSRHAFVDVLSTDDWback to top mRNA from alignment at Contig_118:48004..50293+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_13226 ID=mRNA_13226|Name=jgi.p|Trimin1|174853|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2290bp|location=Sequence derived from alignment at Contig_118:48004..50293+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_118:48004..50293+ >mRNA_13226 ID=mRNA_13226|Name=jgi.p|Trimin1|174853|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=723bp|location=Sequence derived from alignment at Contig_118:48004..50293+ (Tribonema minus UTEX_B_3156 )back to top |