mRNA_13226 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|174853
Unique NamemRNA_13226
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|174853 vs. uniprot
Match: A0A835ZFE8_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFE8_9STRA)

HSP 1 Score: 467 bits (1201), Expect = 4.020e-166
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 1
Query:    1 MADAAAAEGSSGKKWFPLESNPDVMTRYIERLGFDTSRHAFVDVLSTDDWALDMVPQPALAVLMLFPVKAASEAHRAEEAARIEREGQVVSPDVYYMKQTVGNACGTVGLLHAVGNAATKANDSFLSRFLARTRGQTPDAIATVLAEDTELEETHGAAAAEGQSAAPALDEDVTTHFVCFVEVGGRLYELDGRKRSPIDHGATTPAALLRDAARVVRAFMARDPEELRFTIVALAPLADE 720
            MADAAAAEGSSGKKWFPLESNPDVMTRYIERLGFDTSRHAFVDVLSTDDWALDMVPQPALAVLMLFPVKAASEAHRAEEAARIEREGQVVSPDVYYMKQTVGNACGTVGLLHAVGNAATKANDSFLSRFLARTRGQTPDAIATVLAEDTELEETHGAAAAEGQSAAPALDEDVTTHFVCFVEVGGRLYELDGRKRSPIDHGATTPAALLRDAARVVRAFMARDPEELRFTIVALAPLADE
Sbjct:    1 MADAAAAEGSSGKKWFPLESNPDVMTRYIERLGFDTSRHAFVDVLSTDDWALDMVPQPALAVLMLFPVKAASEAHRAEEAARIEREGQVVSPDVYYMKQTVGNACGTVGLLHAVGNAATKANDSFLSRFLARTRGQTPDAIATVLAEDTELEETHGAAAAEGQSAAPALDEDVTTHFVCFVEVGGRLYELDGRKRSPIDHGATTPAALLRDAARVVRAFMARDPEELRFTIVALAPLADE 240          
BLAST of jgi.p|Trimin1|174853 vs. uniprot
Match: A0A7S1C7C4_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C7C4_9STRA)

HSP 1 Score: 284 bits (726), Expect = 4.630e-93
Identity = 150/242 (61.98%), Postives = 176/242 (72.73%), Query Frame = 1
Query:   13 AAAEGSSGKK---WFPLESNPDVMTRYIERLGFDTSRHAFVDVLSTDDWALDMVPQPALAVLMLFPVKAASEAHRAEEAARIEREGQVVSPDVYYMKQTVGNACGTVGLLHAVGNAATKAN--------DSFLSRFLARTRGQTPDAIATVLAEDTELEETHGAAAAEGQSAAPALDEDVTTHFVCFVEVGGRLYELDGRKRSPIDHGATTPAALLRDAARVVRAFMARDPEELRFTIVALA 705
            A AEG   K+   WFPLESNP VM +Y+E+LGF T  +  V+V+STDDWALDMVP+P + V+MLFPVK ASE HR EEAARI  EGQ +  +VYY KQTVGNACGT+GLLH   NA + A         DS+L RFLART+  TPD  A  L +D ELEE+HGAAA+EGQ+  P +DE V  HFV F  V G+L ELDGRK+SPI HG TTP  LL DA +VVR FMARDP+E+RFTIVALA
Sbjct:   43 APAEGGKKKRKKRWFPLESNPHVMNKYLEKLGFPTMMYHTVEVMSTDDWALDMVPKPVIGVVMLFPVKDASEKHRHEEAARIAAEGQDLPAEVYYTKQTVGNACGTIGLLHVAANATSFAGSDLVPLGEDSWLYRFLARTKDMTPDERAAALEDDDELEESHGAAASEGQTTVPDIDESVNAHFVAFSNVKGKLVELDGRKKSPIVHGDTTPETLLADACKVVRDFMARDPDEVRFTIVALA 284          
BLAST of jgi.p|Trimin1|174853 vs. uniprot
Match: A0A8K1FQY3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FQY3_PYTOL)

HSP 1 Score: 277 bits (708), Expect = 4.910e-91
Identity = 143/237 (60.34%), Postives = 175/237 (73.84%), Query Frame = 1
Query:   22 EGSSGKKWFPLESNPDVMTRYIERLGFDTSRHAFVDVLSTDDWALDMVPQPALAVLMLFPVKAASEAHRAEEAARIEREGQVVSPDVYYMKQTVGNACGTVGLLHAVGNA---ATKANDSFLSRFLARTRGQTPDAIATVLAEDTELEETHGAAAAEGQSA-APALDEDVTTHFVCFVEVGGRLYELDGRKRSPIDHGATTPAALLRDAARVVRAFMARDPEELRFTIVALAPLADE 720
            +G  GK+WFPLESNP VM  Y+E+LGF TS  +F DVLST+DWALDMVP+P + VLMLFP+K  +EA   EEAARIE++GQVVSP VYYMKQTVGNACGT+GLLHA+GN     T    S+L +   +T GQTPD IA  L ED ELE+TH +AA EGQS     +D+ V THF+CF  V G LYELDGRK+ PI+HG ++   LL DA +V++ FM RD  E+RFTI+ALA  AD+
Sbjct:    4 DGHGGKRWFPLESNPAVMNTYVEKLGFPTSDFSFCDVLSTEDWALDMVPKPVVGVLMLFPIKKHTEAFAKEEAARIEKDGQVVSPHVYYMKQTVGNACGTIGLLHAIGNMRQHVTIPATSYLGKLFNQTVGQTPDKIADYLEEDDELEDTHESAAQEGQSEQVEDVDDPVDTHFICFSCVDGHLYELDGRKKFPINHGPSSQETLLSDACKVIQQFMVRDEGEVRFTILALAKTADD 240          
BLAST of jgi.p|Trimin1|174853 vs. uniprot
Match: A0A6G0W7W6_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W7W6_9STRA)

HSP 1 Score: 273 bits (698), Expect = 1.680e-89
Identity = 143/237 (60.34%), Postives = 175/237 (73.84%), Query Frame = 1
Query:   10 AAAAEGSSGKKWFPLESNPDVMTRYIERLGF-DTSRHAFVDVLSTDDWALDMVPQPALAVLMLFPVKAASEAHRAEEAARIEREGQVVSPDVYYMKQTVGNACGTVGLLHAVGNAA---TKANDSFLSRFLARTRGQTPDAIATVLAEDTELEETHGAAAAEGQSAA-PALDEDVTTHFVCFVEVGGRLYELDGRKRSPIDHGATTPAALLRDAARVVRAFMARDPEELRFTIVALA 705
            A+  EGS  KKWFPLESNP VM  YI+R+G  + + + F DV ST+DWAL+MV +P LAV++LFP+K ASE H  E+  RIEREGQVVS +VYYMKQTVGNACGTVG+LHA+GNA         SFL+ F  +T G+TPD IA +L +D ELEETH +AA EGQS     +D+ + THFVCF  V G LYELDGRK+ PI+HG ++P  LL DA RV++ FMARD  E+RFTIVALA
Sbjct:    2 ASDEEGSGNKKWFPLESNPQVMNEYIKRMGVAEDAEYGFCDVYSTEDWALEMVLRPVLAVVLLFPIKPASEEHTKEQRGRIEREGQVVSDNVYYMKQTVGNACGTVGILHALGNARHVLPPRPGSFLATFFDKTHGKTPDEIAEILEDDDELEETHASAAQEGQSEQLEHVDDPINTHFVCFSTVEGHLYELDGRKQFPINHGPSSPETLLEDACRVIKEFMARDEGEVRFTIVALA 238          
BLAST of jgi.p|Trimin1|174853 vs. uniprot
Match: A0A1V9YLF7_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YLF7_9STRA)

HSP 1 Score: 266 bits (681), Expect = 6.180e-87
Identity = 143/233 (61.37%), Postives = 168/233 (72.10%), Query Frame = 1
Query:   37 KKWFPLESNPDVMTRYIERLGFDT-SRHAFVDVLSTDDWALDMVPQPALAVLMLFPVKAASEAHRAEEAARIEREGQVVSPDVYYMKQTVGNACGTVGLLHAVGNAA---TKANDSFLSRFLARTRGQTPDAIATVLAEDTELEETHGAAAAEGQS-AAPALDEDVTTHFVCFVEVGGRLYELDGRKRSPIDHGATTPAALLRDAARVVRAFMARDPEELRFTIVALAPLADE 720
            K+WFPLESNP VM  YI+R+G    S   F DV ST+DWALDMVP+P LAV+MLFP+KA +EA+   E  RIE+ GQ VSP+VYYMKQTVGNACGTVG+LHA+GNA    T  + SFL  F A+TR +TP  IA +L ED ELEETH +AA EGQS     +D+ + THFVC   V G LYELDGRK  PI+HG ++ A LL DA RVVR FM RD  E+RFTIVALA   DE
Sbjct:   10 KRWFPLESNPAVMNEYIKRMGLPADSAFEFCDVYSTEDWALDMVPRPVLAVIMLFPIKAHTEAYAKAEHERIEKNGQAVSPNVYYMKQTVGNACGTVGILHALGNAGEHMTFTHGSFLQSFFAKTRDKTPAEIAEILEEDDELEETHASAAQEGQSDQLEHIDDPINTHFVCLSVVDGHLYELDGRKAFPINHGPSSSATLLEDACRVVRDFMQRDEGEVRFTIVALAKTPDE 242          
BLAST of jgi.p|Trimin1|174853 vs. uniprot
Match: M4BQF5_HYAAE (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BQF5_HYAAE)

HSP 1 Score: 264 bits (675), Expect = 4.560e-86
Identity = 135/230 (58.70%), Postives = 171/230 (74.35%), Query Frame = 1
Query:   37 KKWFPLESNPDVMTRYIERLGFDTSRHAFVDVLSTDDWALDMVPQPALAVLMLFPVKAASEAHRAEEAARIEREGQVVSPDVYYMKQTVGNACGTVGLLHAVGNA---ATKANDSFLSRFLARTRGQTPDAIATVLAEDTELEETHGAAAAEGQSAA-PALDEDVTTHFVCFVEVGGRLYELDGRKRSPIDHGATTPAALLRDAARVVRAFMARDPEELRFTIVALAPLA 714
            K+WFPLESNPDVM  Y++++GF TS+ +F DVLST++WAL MV  P +AVLMLFP+K  +E    +EAARIE+EGQ VSPDVYYM+QTVGNACGTVG+LHAVGN       A  S+L +F   T+ +TP  IA  L ED ELE+THG AA  GQS    ++D+ + THFVCF  V G LYELDGRK+SPI+HG ++   +L+DA +V++ FMARD  E+RFTI+ALA  A
Sbjct:    8 KRWFPLESNPDVMNAYVKKMGFPTSQFSFCDVLSTEEWALGMVSTPIVAVLMLFPIKPHTEEADKQEAARIEKEGQTVSPDVYYMRQTVGNACGTVGILHAVGNMRHLVQLAPGSYLDKFFNTTKTKTPQEIAQYLEEDDELEKTHGGAAEAGQSEQLQSVDDPINTHFVCFSCVDGNLYELDGRKKSPINHGPSSQETILQDACKVIKKFMARDENEMRFTILALAKTA 237          
BLAST of jgi.p|Trimin1|174853 vs. uniprot
Match: A0A3F2RNT3_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RNT3_9STRA)

HSP 1 Score: 264 bits (675), Expect = 4.710e-86
Identity = 133/233 (57.08%), Postives = 168/233 (72.10%), Query Frame = 1
Query:   28 SSGKKWFPLESNPDVMTRYIERLGFDTSRHAFVDVLSTDDWALDMVPQPALAVLMLFPVKAASEAHRAEEAARIEREGQVVSPDVYYMKQTVGNACGTVGLLHAVGNAATKAN---DSFLSRFLARTRGQTPDAIATVLAEDTELEETHGAAAAEGQSAA-PALDEDVTTHFVCFVEVGGRLYELDGRKRSPIDHGATTPAALLRDAARVVRAFMARDPEELRFTIVALAPLA 714
            S  K+WFPLESNPDVM  Y+E++GF T + +F DVLST++WAL MVP P +AV+MLFP+K  +E    +EA RIEREGQ VSP+VYYM+QTVGNACGTVG+LHA+GN          S+L +F  +T+ +TP  IA  L ED ELEETHG+AA  GQS     +D+ + THFVCF  V G LYELDGRK+ PI+HG ++P  +L DA   ++ FMARD  E+RFTI+ALA  A
Sbjct:    6 SKPKRWFPLESNPDVMNNYVEKMGFPTDQFSFCDVLSTEEWALGMVPSPVVAVIMLFPIKPHTEEAAKQEAVRIEREGQTVSPNVYYMRQTVGNACGTVGILHAIGNMRHLVQLTPGSYLDKFFNKTKTKTPKEIAQYLEEDDELEETHGSAAEAGQSEQLETVDDPINTHFVCFSHVDGHLYELDGRKKHPINHGPSSPTTVLPDACAEIKKFMARDEGEMRFTILALAKTA 238          
BLAST of jgi.p|Trimin1|174853 vs. uniprot
Match: W4GMT7_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GMT7_9STRA)

HSP 1 Score: 264 bits (675), Expect = 5.030e-86
Identity = 138/236 (58.47%), Postives = 171/236 (72.46%), Query Frame = 1
Query:   13 AAAEGSSGKKWFPLESNPDVMTRYIERLGF-DTSRHAFVDVLSTDDWALDMVPQPALAVLMLFPVKAASEAHRAEEAARIEREGQVVSPDVYYMKQTVGNACGTVGLLHAVGNAAT---KANDSFLSRFLARTRGQTPDAIATVLAEDTELEETHGAAAAEGQSAA-PALDEDVTTHFVCFVEVGGRLYELDGRKRSPIDHGATTPAALLRDAARVVRAFMARDPEELRFTIVALA 705
            AAA  +  K+WFPLESNP VM  YI R+G  + +  AF DV STDDWAL+MV +P L V+MLFP+K A+E H  +E  RIE++GQ+VS +VYYMKQTVGNACGTVG+LHA+GNA       + SFLS F ++T G+TPD IA +L  D E+EETH +AA +GQS     +D+ + THFVCF  V G LYELDGRK  PI+HG ++P  LL DA  V+R FMARD  E+RFTIVALA
Sbjct:    2 AAATTTKAKRWFPLESNPQVMNEYIRRMGIAEDAEFAFCDVYSTDDWALEMVLRPVLGVVMLFPIKPATEDHAKQERERIEKDGQIVSKNVYYMKQTVGNACGTVGILHALGNARDYLPPRHGSFLSSFFSKTDGKTPDEIAAILQADDEIEETHASAAQDGQSEQLEHVDDPINTHFVCFSVVDGHLYELDGRKEFPINHGPSSPETLLGDACAVIRQFMARDEGEVRFTIVALA 237          
BLAST of jgi.p|Trimin1|174853 vs. uniprot
Match: A0A024UT19_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UT19_9STRA)

HSP 1 Score: 264 bits (674), Expect = 6.680e-86
Identity = 135/231 (58.44%), Postives = 170/231 (73.59%), Query Frame = 1
Query:   28 SSGKKWFPLESNPDVMTRYIERLGF-DTSRHAFVDVLSTDDWALDMVPQPALAVLMLFPVKAASEAHRAEEAARIEREGQVVSPDVYYMKQTVGNACGTVGLLHAVGNAAT---KANDSFLSRFLARTRGQTPDAIATVLAEDTELEETHGAAAAEGQSAA-PALDEDVTTHFVCFVEVGGRLYELDGRKRSPIDHGATTPAALLRDAARVVRAFMARDPEELRFTIVALA 705
            S  K+WFPLESNP VM  YI R+G  + +  AF D+ STD+WAL+MV +P L V+MLFP+K  SE H  E+  RIE+EGQ+VSP+VY+MKQTVGNACGTVG+LHA+GNA       + SFLS F ++T G+TPD IA +L +D E+EETH +AA EGQS     +D+ + THFVCF  V G LYELDGRK+ P++HG ++   LL DA RV+R FMARD  E+RFTIVALA
Sbjct:    5 SKAKRWFPLESNPQVMNEYIRRMGIPEDADFAFCDLYSTDEWALEMVLRPVLGVVMLFPIKPVSELHAKEQLERIEKEGQIVSPNVYFMKQTVGNACGTVGILHALGNAKDYLPPRDGSFLSSFFSKTVGKTPDEIAAILQDDDEIEETHASAAQEGQSEQLERVDDPINTHFVCFSVVDGHLYELDGRKKFPVNHGPSSQETLLEDACRVIRQFMARDEGEVRFTIVALA 235          
BLAST of jgi.p|Trimin1|174853 vs. uniprot
Match: H3H379_PHYRM (Ubiquitin carboxyl-terminal hydrolase n=15 Tax=Phytophthora TaxID=4783 RepID=H3H379_PHYRM)

HSP 1 Score: 263 bits (673), Expect = 9.480e-86
Identity = 131/237 (55.27%), Postives = 175/237 (73.84%), Query Frame = 1
Query:   22 EGSSGKKWFPLESNPDVMTRYIERLGFDTSRHAFVDVLSTDDWALDMVPQPALAVLMLFPVKAASEAHRAEEAARIEREGQVVSPDVYYMKQTVGNACGTVGLLHAVGNAATKAN---DSFLSRFLARTRGQTPDAIATVLAEDTELEETHGAAAAEGQSAA-PALDEDVTTHFVCFVEVGGRLYELDGRKRSPIDHGATTPAALLRDAARVVRAFMARDPEELRFTIVALAPLADE 720
            EG+  K+WFPLESNP+VM  Y+E++GF T+  +F DVLST++WAL MVP P +AV+MLFP+K  +E    +EA RIE++GQ++SP+VYYM+QTVGNACGTVG+LHA+GN          S+L +F   T+ +TP+ IA  L ED ELEETHG+AA  GQS    ++D+ + THFVCF  V G LYELDGRK+ PI+HG ++P  LL+DA + ++ FMARD  E+RFTI+ALA  A +
Sbjct:    4 EGNKHKRWFPLESNPEVMNAYVEKMGFPTTAFSFCDVLSTEEWALAMVPSPVVAVIMLFPIKPHTEEADKQEAKRIEKDGQIMSPNVYYMRQTVGNACGTVGILHAIGNMRHLVRLTPGSYLDKFFNTTKTKTPEEIAQYLEEDDELEETHGSAAEAGQSEQLESVDDPINTHFVCFSCVDGTLYELDGRKKRPINHGPSSPDTLLQDACQAIKKFMARDEGEMRFTILALAKTATD 240          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174853 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZFE8_9STRA4.020e-166100.00Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Trib... [more]
A0A7S1C7C4_9STRA4.630e-9361.98Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Bico... [more]
A0A8K1FQY3_PYTOL4.910e-9160.34Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6G0W7W6_9STRA1.680e-8960.34Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Apha... [more]
A0A1V9YLF7_9STRA6.180e-8761.37Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Achl... [more]
M4BQF5_HYAAE4.560e-8658.70Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Hyal... [more]
A0A3F2RNT3_9STRA4.710e-8657.08Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Phyt... [more]
W4GMT7_9STRA5.030e-8658.47Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Apha... [more]
A0A024UT19_9STRA6.680e-8658.44Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Apha... [more]
H3H379_PHYRM9.480e-8655.27Ubiquitin carboxyl-terminal hydrolase n=15 Tax=Phy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_118contigContig_118:48004..50293 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|174853|e_gw1.118.46.1
BRITEko00000,ko01000,ko01002,ko04121
KEGG koko:K05609
EC3.4.19.12
DescriptionUbiquitin carboxyl-terminal hydrolase, family 1
COG categoryO
Max annot lvl4776|Peronosporales
EggNOG OGsKOG1415@1|root,KOG1415@2759|Eukaryota,3QBSI@4776|Peronosporales
Evalue7.47e-87
Seed ortholog272952.HpaP808644
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPeptidase C12, ubiquitin carboxyl-terminal hydrolase
Ec32 orthologEc-14_003970.1
TranscriptId175175
TrackFilteredModels1
ProteinId174853
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174853gene_13226Tribonema minus UTEX_B_3156 geneContig_118 48004..50293 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13226_1exon_13226_1Tribonema minus UTEX_B_3156 exonContig_118 48004..48267 +
exon_13226_2exon_13226_2Tribonema minus UTEX_B_3156 exonContig_118 48735..48834 +
exon_13226_3exon_13226_3Tribonema minus UTEX_B_3156 exonContig_118 49364..49541 +
exon_13226_4exon_13226_4Tribonema minus UTEX_B_3156 exonContig_118 50113..50293 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13226CDS_13226Tribonema minus UTEX_B_3156 CDSContig_118 48004..48267 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174853Trimin1|174853|e_gw1.118.46.1Tribonema minus UTEX_B_3156 polypeptideContig_118 48004..50293 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13226 ID=mRNA_13226|Name=jgi.p|Trimin1|174853|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=723bp|location=Sequence derived from alignment at Contig_118:48004..50293+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGACGCGGCAGCGGCGGAGGGCAGCAGCGGCAAGAAGTGGTTCCC
CCTCGAGTCAAACCCGGACGTCATGACGCGCTACATCGAGCGCCTCGGCT
TCGACACGTCGCGCCACGCGTTCGTCGACGTGCTGAGCACTGACGACTGG
GCGCTGGACATGGTGCCGCAGCCCGCGCTCGCGGTGCTCATGCTGTTCCC
GGTGAAGGCGGCGTCGGAGGCGCACAGGGCGGAGGAGGCGGCGCGCATCG
AGCGCGAGGGGCAGGTGGTGAGCCCGGACGTCTACTACATGAAGCAGACG
GTCGGCAACGCGTGCGGCACGGTGGGCCTGCTGCATGCGGTCGGGAATGC
AGCCACCAAGGCAAACGATTCTTTCCTGAGCCGGTTCTTGGCGCGCACGC
GCGGACAGACCCCCGACGCCATCGCCACCGTGCTCGCGGAGGACACGGAG
CTGGAGGAGACGCACGGGGCGGCGGCGGCGGAGGGGCAGAGCGCGGCGCC
GGCGCTCGACGAGGACGTCACCACGCACTTTGTGTGCTTTGTCGAGGTCG
GCGGCCGCCTGTACGAGCTTGACGGCCGCAAGCGCTCGCCAATCGACCAC
GGCGCGACGACGCCAGCGGCGCTGCTGCGCGACGCCGCGCGCGTCGTGCG
CGCCTTCATGGCGCGCGACCCCGAGGAGCTGCGCTTCACGATCGTTGCGC
TCGCGCCACTGGCGGACGAATGA
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protein sequence of jgi.p|Trimin1|174853

>Trimin1|174853|e_gw1.118.46.1 ID=Trimin1|174853|e_gw1.118.46.1|Name=jgi.p|Trimin1|174853|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=241bp
MADAAAAEGSSGKKWFPLESNPDVMTRYIERLGFDTSRHAFVDVLSTDDW
ALDMVPQPALAVLMLFPVKAASEAHRAEEAARIEREGQVVSPDVYYMKQT
VGNACGTVGLLHAVGNAATKANDSFLSRFLARTRGQTPDAIATVLAEDTE
LEETHGAAAAEGQSAAPALDEDVTTHFVCFVEVGGRLYELDGRKRSPIDH
GATTPAALLRDAARVVRAFMARDPEELRFTIVALAPLADE*
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mRNA from alignment at Contig_118:48004..50293+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13226 ID=mRNA_13226|Name=jgi.p|Trimin1|174853|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2290bp|location=Sequence derived from alignment at Contig_118:48004..50293+ (Tribonema minus UTEX_B_3156 )
ATGGCGGACGCGGCAGCGGCGGAGGGCAGCAGCGGCAAGAAGTGGTTCCC CCTCGAGTCAAACCCGGACGTCATGACGCGCTACATCGAGCGCCTCGGCT TCGACACGTCGCGCCACGCGTTCGTCGACGTGCTGAGCACTGACGACTGG GCGCTGGACATGGTGCCGCAGCCCGCGCTCGCGGTGCTCATGCTGTTCCC GGTGAAGGCGGCGTCGGAGGCGCACAGGGCGGAGGAGGCGGCGCGCATCG AGCGCGAGGGGCAGGTATGCTGGTCTGTGCAGCATGCGGTCATGAAGCGG CTTACACTTAGGCTTAGGGTTAGAATAAGTGGTCCGTGCAGTGCGGGCTG GAATCTGCGAAGAAGCGAGGGGTGCGGAGGTGTCAACTCTCGTGGTGCAT TGGCGATACTGATTCGAGTGCTATTTGGAACGGATCTTTGAGCAAGCTTT GCGCTATCAGGCTGCGACGCCATGTTCAAAGCGGCGGCGGCGGCGCTTGC GCGACGGCGCTGCACTGCTGGGCGGCGGCAGCTGCGGCGCGCGCTTGTCA GCGGCGCCGCTCGCATTCCATTCCCCTCCACATTTGCTGTCTGGCAGCAA CGATCAGCGCTTGTCGCAGGTGCAGTGTGTGTCAAGTTGCCCGTCTACGC GCCCGCACGCGCTCGTGCCTCCAACTGCAGCATCGCTCCTCGCCTCAACC GCCCTCTGCGCGCCGCTGCCGCCGTCGCCAGGTGGTGAGCCCGGACGTCT ACTACATGAAGCAGACGGTCGGCAACGCGTGCGGCACGGTGGGCCTGCTG CATGCGGTCGGGAATGCAGCCACCAAGGCAAGTCACCGCACTGGCTCAAT ACGGGCGTCGGCCGCGACGCTGCTACTGCTGCGGCCGCCTGGCGCCGCCG CAATGCGCCGCGTGCATGCGTAGTTCTGCGGCGCTGGCTGCCAGTGCGCG CTGGAAGCGCAATATTGATGCTGCTGAGCGTTGAGATCCATTGCGTGTCT GCTGGCGCTGGACGTCACGCCATCATTGCGAGGGCACTGCAGTTGCTGCA TGCAGGTGCCGTTGCTGCTGCCGATTGAAGCCTCTGATGCTGCTGCCAAT GGATGCCTCTGCTGCTGCTGCCATAGGATGCCTGTGCCGCTCTTGCTGCC AAGGACACCCTGCGGCTAGTGCTGAGGATTTCGCTTGCGGGCTACCTTTG GCTGCTGCATGAGACATGCGCGCTACGAATCTGCACCACAGTTGCCGTCG ACGCACGCACGCACCCCGCTCCGCCGCCCCAAGCACCCCGCTGCCCTAAC GCTACAAAATGATACCGTCTTCCATGATCGTCTCGCGGCAGGTTCCGGGC GCGGTCCGAGACGATTCTTTCCTGAGCCGGTTCTTGGCGCGCACGCGCGG ACAGACCCCCGACGCCATCGCCACCGTGCTCGCGGAGGACACGGAGCTGG AGGAGACGCACGGGGCGGCGGCGGCGGAGGGGCAGAGCGCGGCGCCGGCG CTCGACGAGGACGTCACCACGCACTTTGTGTGCTTTGTGTGAGTGACTGC TGGTGGTAGCTCTAGGCTGCTGAACGCTGGGCACACGTGCGAGTGATTAC GGACCGTACTTGTGGCTGACTGAGCGCTGTGCATGTGCCGGAGGAGGGCG TCATCCAGGCCTGACGTGCGCGCATTCCGCATGTGCGTAGCGGCAGCGCG CCTGCCCAGAAGCGGGGCAGCGGAGCTCAGTGTCAGCGCGCGCTTCGCGT GCGATGGCGGTGCAGCAGCGTATGCGCGCAGCGCAAACAGGCCGCACACT ACAGCACCCAGGGATCTGAAAGCGTGCGCGTGAACAGACCCCTCCTCACC GCGCAGCGCCCCCCTCACACACCCCTGTCCACGAGCCGCCGCCGCGCTGC TCAGCGAGGTCGGCGGCCGCCTGTACAAGCTGGACGGACGCAAGCGTTCG CCGGTCGACCACGGCGCCGGCGGCGCTGCTGCGCTGCGCACCGTTAGGGC GCACACCGCCCAGTCAACCAGGATGTGGAACGCGTGCGTGTCAACAGACC TTCTACCGCCTCTCCTCACACACACCCCTGTTCACACGCGCCGCCGCCGC ACTGCGCAGCGAGGTCGGCGGCCGCCTGTACGAGCTTGACGGCCGCAAGC GCTCGCCAATCGACCACGGCGCGACGACGCCAGCGGCGCTGCTGCGCGAC GCCGCGCGCGTCGTGCGCGCCTTCATGGCGCGCGACCCCGAGGAGCTGCG CTTCACGATCGTTGCGCTCGCGCCACTGGCGGACGAATGA
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Coding sequence (CDS) from alignment at Contig_118:48004..50293+

>mRNA_13226 ID=mRNA_13226|Name=jgi.p|Trimin1|174853|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=723bp|location=Sequence derived from alignment at Contig_118:48004..50293+ (Tribonema minus UTEX_B_3156 )
ATGGCGGACGCGGCAGCGGCGGAGGGCAGCAGCGGCAAGAAGTGGTTCCC
CCTCGAGTCAAACCCGGACGTCATGACGCGCTACATCGAGCGCCTCGGCT
TCGACACGTCGCGCCACGCGTTCGTCGACGTGCTGAGCACTGACGACTGG
GCGCTGGACATGGTGCCGCAGCCCGCGCTCGCGGTGCTCATGCTGTTCCC
GGTGAAGGCGGCGTCGGAGGCGCACAGGGCGGAGGAGGCGGCGCGCATCG
AGCGCGAGGGGCAGGTGGTGAGCCCGGACGTCTACTACATGAAGCAGACG
GTCGGCAACGCGTGCGGCACGGTGGGCCTGCTGCATGCGGTCGGGAATGC
AGCCACCAAGGCAAACGATTCTTTCCTGAGCCGGTTCTTGGCGCGCACGC
GCGGACAGACCCCCGACGCCATCGCCACCGTGCTCGCGGAGGACACGGAG
CTGGAGGAGACGCACGGGGCGGCGGCGGCGGAGGGGCAGAGCGCGGCGCC
GGCGCTCGACGAGGACGTCACCACGCACTTTGTGTGCTTTGTCGAGGTCG
GCGGCCGCCTGTACGAGCTTGACGGCCGCAAGCGCTCGCCAATCGACCAC
GGCGCGACGACGCCAGCGGCGCTGCTGCGCGACGCCGCGCGCGTCGTGCG
CGCCTTCATGGCGCGCGACCCCGAGGAGCTGCGCTTCACGATCGTTGCGC
TCGCGCCACTGGCGGACGAATGA
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