mRNA_1319 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|161799
Unique NamemRNA_1319
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|161799 vs. uniprot
Match: A0A835Z6E7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6E7_9STRA)

HSP 1 Score: 579 bits (1493), Expect = 9.740e-210
Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 1 
Query:    1 MYSKCLLNRHREWVLLNTFGNPPCARSGHAAVIVRGKIYVFGGCDGDVVYNDLHCFDTVTHEWRVIMSEGAPTPRAAFGMCAGPGDEDFTIACGSNTQFMSAYSDVWSFNTRHRTWTQLFESPKALYGVSICWYGRMLLMYAGTAGLEYCNHLYAFHSLTSSVIKVSTTGVCPSIWYKHESFAVNDDMYVFGGGCFAPTEGRMFISWLDLRSLEWKQVQVQNDTSIPRTAFSSCVGPETSKVWVFGGFDADNTCLQSFQSYDMLSRK 801
            MYSKCLLNRHREWVLLNTFGNPPCARSGHAAVIVRGKIYVFGGCDGDVVYNDLHCFDTVTHEWRVIMSEGAPTPRAAFGMCAGPGDEDFTIACGSNTQFMSAYSDVWSFNTRHRTWTQLFESPKALYGVSICWYGRMLLMYAGTAGLEYCNHLYAFHSLTSSVIKVSTTGVCPSIWYKHESFAVNDDMYVFGGGCFAPTEGRMFISWLDLRSLEWKQVQVQNDTSIPRTAFSSCVGPETSKVWVFGGFDADNTCLQSFQSYDMLSRK
Sbjct:    1 MYSKCLLNRHREWVLLNTFGNPPCARSGHAAVIVRGKIYVFGGCDGDVVYNDLHCFDTVTHEWRVIMSEGAPTPRAAFGMCAGPGDEDFTIACGSNTQFMSAYSDVWSFNTRHRTWTQLFESPKALYGVSICWYGRMLLMYAGTAGLEYCNHLYAFHSLTSSVIKVSTTGVCPSIWYKHESFAVNDDMYVFGGGCFAPTEGRMFISWLDLRSLEWKQVQVQNDTSIPRTAFSSCVGPETSKVWVFGGFDADNTCLQSFQSYDMLSRK 267
[Close]
BLAST of jgi.p|Trimin1|161799 vs. uniprot
Match: A0A835ZA21_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA21_9STRA)

HSP 1 Score: 494 bits (1272), Expect = 1.560e-174
Identity = 229/267 (85.77%), Postives = 244/267 (91.39%), Query Frame = 1 
Query:    1 MYSKCLLNRHREWVLLNTFGNPPCARSGHAAVIVRGKIYVFGGCDGDVVYNDLHCFDTVTHEWRVIMSEGAPTPRAAFGMCAGPGDEDFTIACGSNTQFMSAYSDVWSFNTRHRTWTQLFESPKALYGVSICWYGRMLLMYAGTAGLEYCNHLYAFHSLTSSVIKVSTTGVCPSIWYKHESFAVNDDMYVFGGGCFAPTEGRMFISWLDLRSLEWKQVQVQNDTSIPRTAFSSCVGPETSKVWVFGGFDADNTCLQSFQSYDMLSRK 801
            MYSK LLNRHREWVLLNTFG+PPCARSGHAAV+VRGKIYVFGGCDG VVYNDLH FDT THEW  I SEG PTPRAAFGMCAGPG++DFTIACGS+TQ+MSA+SD+WSFNTR RTWT+LFESPKALYGVSICWYGRMLLMYAGT GLEYCNHLYAF SLTSSV+KVSTTGVCPS  YKHESF ++DDMYVFGGGCFAPTEG MFIS L+LRSLEWKQVQVQNDTSIPRTAFS C+ PET KVWVFGGFDADNT LQ+FQ YDM  RK
Sbjct:    1 MYSKSLLNRHREWVLLNTFGDPPCARSGHAAVVVRGKIYVFGGCDGVVVYNDLHWFDTATHEWSAIHSEGGPTPRAAFGMCAGPGEDDFTIACGSDTQYMSAFSDIWSFNTRRRTWTKLFESPKALYGVSICWYGRMLLMYAGTTGLEYCNHLYAFDSLTSSVVKVSTTGVCPSRRYKHESFILDDDMYVFGGGCFAPTEGCMFISRLNLRSLEWKQVQVQNDTSIPRTAFSCCMDPETLKVWVFGGFDADNTRLQAFQCYDMQLRK 267
[Close]
BLAST of jgi.p|Trimin1|161799 vs. uniprot
Match: A0A835Z6H5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6H5_9STRA)

HSP 1 Score: 448 bits (1152), Expect = 2.400e-156
Identity = 207/267 (77.53%), Postives = 229/267 (85.77%), Query Frame = 1 
Query:    1 MYSKCLLNRHREWVLLNTFGNPPCARSGHAAVIVRGKIYVFGGCDGDVVYNDLHCFDTVTHEWRVIMSEGAPTPRAAFGMCAGPGDEDFTIACGSNTQFMSAYSDVWSFNTRHRTWTQLFESPKALYGVSICWYGRMLLMYAGTAGLEYCNHLYAFHSLTSSVIKVSTTGVCPSIWYKHESFAVNDDMYVFGGGCFAPTEGRMFISWLDLRSLEWKQVQVQNDTSIPRTAFSSCVGPETSKVWVFGGFDADNTCLQSFQSYDMLSRK 801
            M S+ L N+H+EW+ LNTFG+ PCARSGH+AV+V GKIYVFGGCDG  VYNDLH FDTVTHEW VI +EG PTPRAAFGMCAGPG+EDFTIACGSNTQ MSA++D+W FNTR R WT++FESPKALYGVSICWYGRMLLMYAGT G +Y NHLYAF + TS V KVSTTGVCPS  YKHESF VNDDMYVFGGGCFAPTEG MFIS LDLRSLEWKQV V+ DTS+ RTA S CV PET KVWVFGGFDADNT LQ+FQ+YD+ S +
Sbjct:    1 MRSRYLWNQHQEWLHLNTFGDRPCARSGHSAVVVGGKIYVFGGCDGVAVYNDLHRFDTVTHEWSVIHAEGGPTPRAAFGMCAGPGEEDFTIACGSNTQHMSAFADIWRFNTRRRAWTKMFESPKALYGVSICWYGRMLLMYAGTTGSKYSNHLYAFDARTSGVAKVSTTGVCPSRRYKHESFVVNDDMYVFGGGCFAPTEGCMFISRLDLRSLEWKQVDVEGDTSVARTAVSCCVDPETLKVWVFGGFDADNTRLQAFQNYDLTSNE 267
[Close]
BLAST of jgi.p|Trimin1|161799 vs. uniprot
Match: A0A835Z2J9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2J9_9STRA)

HSP 1 Score: 449 bits (1156), Expect = 6.500e-156
Identity = 207/245 (84.49%), Postives = 221/245 (90.20%), Query Frame = 1 
Query:   67 PCARSGHAAVIVRGKIYVFGGCDGDVVYNDLHCFDTVTHEWRVIMSEGAPTPRAAFGMCAGPGDEDFTIACGSNTQFMSAYSDVWSFNTRHRTWTQLFESPKALYGVSICWYGRMLLMYAGTAGLEYCNHLYAFHSLTSSVIKVSTTGVCPSIWYKHESFAVNDDMYVFGGGCFAPTEGRMFISWLDLRSLEWKQVQVQNDTSIPRTAFSSCVGPETSKVWVFGGFDADNTCLQSFQSYDMLSRK 801
            PCARSG +AV+V  KIYVFGGCDG VVYNDLHCFDTVTHEWRV+ SEG PTPRAAFGMC GPGDEDFTIACGSNTQFMSAYSDVWSFNTRHRTWT+LFESPKALYGVSICWYGR+LLMYAGT GLEYCNHLYAF+SL SSV+KVSTTG+CPS  YKHESF +ND+MYVFGGGCFAPTEG MFIS L+LRSLEWKQ+ V  DTS+ RTAFS C  PET KVWVFGGFDADNT LQ+FQSYDM SRK
Sbjct:   87 PCARSGQSAVLVGDKIYVFGGCDGVVVYNDLHCFDTVTHEWRVVHSEGGPTPRAAFGMCVGPGDEDFTIACGSNTQFMSAYSDVWSFNTRHRTWTKLFESPKALYGVSICWYGRILLMYAGTTGLEYCNHLYAFNSLASSVVKVSTTGICPSRRYKHESFILNDNMYVFGGGCFAPTEGCMFISRLNLRSLEWKQLHVDGDTSVARTAFSCCADPETLKVWVFGGFDADNTRLQAFQSYDMQSRK 331
[Close]
BLAST of jgi.p|Trimin1|161799 vs. uniprot
Match: A0A836CDJ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDJ9_9STRA)

HSP 1 Score: 419 bits (1078), Expect = 1.460e-145
Identity = 193/267 (72.28%), Postives = 223/267 (83.52%), Query Frame = 1 
Query:    1 MYSKCLLNRHREWVLLNTFGNPPCARSGHAAVIVRGKIYVFGGCDGDVVYNDLHCFDTVTHEWRVIMSEGAPTPRAAFGMCAGPGDEDFTIACGSNTQFMSAYSDVWSFNTRHRTWTQLFESPKALYGVSICWYGRMLLMYAGTAGLEYCNHLYAFHSLTSSVIKVSTTGVCPSIWYKHESFAVNDDMYVFGGGCFAPTEGRMFISWLDLRSLEWKQVQVQNDTSIPRTAFSSCVGPETSKVWVFGGFDADNTCLQSFQSYDMLSRK 801
            M S+ +LN+HREW+ LNTFG+ PCARSG ++V+VR KIYVFGGCDG V YNDLHCFDTV HEW V+ SEG PTPRAAFGMCAGPG EDFTIACGSNTQ+MSAYS  WS++TR R WT+LFESPKALYGVSICW+G +LLMYAGT G EYCNHLYAF    + V+KVST+G CPS  YKHES  V+D MY+ GGG FAPTE  M+I+ L+LRSL W+QV+VQNDTS PRTAFS CV PET KVWVFGGFDADNT +Q+FQ+YD+ S +
Sbjct:    1 MCSRYILNQHREWLHLNTFGDRPCARSGQSSVVVRDKIYVFGGCDGVVDYNDLHCFDTVMHEWSVMHSEGGPTPRAAFGMCAGPGAEDFTIACGSNTQYMSAYSYGWSYDTRRRKWTELFESPKALYGVSICWHGHILLMYAGTTGSEYCNHLYAFDLRIAGVVKVSTSGSCPSRRYKHESVIVDDCMYILGGGSFAPTESCMYINQLNLRSLVWQQVKVQNDTSTPRTAFSCCVDPETLKVWVFGGFDADNTRIQAFQNYDLTSNE 267
[Close]
BLAST of jgi.p|Trimin1|161799 vs. uniprot
Match: A0A835YN69_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN69_9STRA)

HSP 1 Score: 298 bits (762), Expect = 7.140e-97
Identity = 135/261 (51.72%), Postives = 175/261 (67.05%), Query Frame = 1 
Query:    7 SKCLLNRHREWVLLNTFGNPPCARSGHAAVIVRGKIYVFGGCDGDVVYNDLHCFDTVTHEWRVIMSEGAPTPRAAFGMCAGPGDEDFTIACGSNTQFMSAYSDVWSFNTRHRTWTQLFESPKALYGVSICWYGRMLLMYAGTAGLEYCNHLYAFHSLTSSVIKVSTTGVCPSIWYKHESFAVNDDMYVFGGGCFAPTEGRMFISWLDLRSLEWKQVQVQNDTSIPRTAFSSCVGPETSKVWVFGGFDADNTCLQSFQSYDM 789
            S+C L  H EW  LNT G+ PCARSG  AV+V   +Y+FGGCDG+ V ND+  F   T EW+ I  +  P+ R +FG+C GPG ED T+ACG N     A +D+WSFN RHRTWT+ F+SP+ALYGVS+CW    LLMY G+ G+ Y + LYAF   T +V K+ T+G  PS  YK E F V++++Y+ GGG FAP  GRM +  L+L SL W  ++ +ND S PR AFS CV  ETSK W+FGGF   N  LQ+FQ++D+
Sbjct:    6 SRCELESHNEWRQLNTVGDAPCARSGQGAVVVDDVVYIFGGCDGEAVSNDIRAFYIHTSEWQKITHQLGPSARTSFGICLGPGVEDVTVACGCNLDTPGALADIWSFNVRHRTWTKRFDSPRALYGVSVCWNDDNLLMYGGSTGVAYSDTLYAFSLKTGNVAKIKTSGEGPSERYKQEMFVVDENLYMCGGGAFAPAAGRMQMFKLNLTSLSWHVLEAENDISTPRAAFSCCVDSETSKAWIFGGFSVHNNRLQAFQTFDI 266
[Close]
BLAST of jgi.p|Trimin1|161799 vs. uniprot
Match: A0A836CD99_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD99_9STRA)

HSP 1 Score: 283 bits (723), Expect = 3.110e-91
Identity = 132/257 (51.36%), Postives = 176/257 (68.48%), Query Frame = 1 
Query:   28 HREWVLLNTFGNPPCARSGHAAVIVRGKIYVFGGCDGDVVYNDLHCFDTVTHEWRVIMSEGAPTPRAAFGMCAGPGDEDFTIACGSNTQFMSAYSDVWSFNTRHRTWTQLFESPKALYGVSICWYGRMLLMYAGTAGLEYCNHLYAFHSLTSSVIKVSTTGVCPSIWYKHESFAVNDDMYVFGGGCFAPTEGRMFISWLDLRSLEWKQVQVQND-TSIPRTAFSSCVGPETSKVWVFGGFDADNTCLQSFQSYDMLS 795
            H  W+ L TFG+ P  RSG  A +V G +Y+FGGCD  V+ ND++ FD  THEW  +  +  P+PRAAFGMC+GPG  DFT+ACG      SA SD+WSF+ R R W +LFESP+A YGVSICW+G  LL++ GT+G+EY   LYAF   T S+++V+T+G  PS  YKH SF   +DMYV GGG F+PTE  M +  L+L +L W+++    +  SI RTA + C   E+SK WVFGGFD+D   LQ+FQ++D++S
Sbjct:   10 HHRWLRLRTFGDVPTLRSGQGAAVVAGSVYIFGGCDA-VMQNDIYRFDVDTHEWCAVTCDDGPSPRAAFGMCSGPGQYDFTVACGCGLGERSAQSDIWSFDVRRRRWRKLFESPRAAYGVSICWHGSTLLLWGGTSGVEYYASLYAFTLHTGSIVRVNTSGCGPSKRYKHVSFVYGNDMYVCGGGTFSPTERSMGMHKLNLTTLVWQRLGDDREGVSIGRTACTCCFDVESSKAWVFGGFDSDAKRLQAFQTFDVVS 265
[Close]
BLAST of jgi.p|Trimin1|161799 vs. uniprot
Match: A0A835YYR4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYR4_9STRA)

HSP 1 Score: 262 bits (670), Expect = 3.170e-86
Identity = 115/146 (78.77%), Postives = 131/146 (89.73%), Query Frame = 1 
Query:    1 MYSKCLLNRHREWVLLNTFGNPPCARSGHAAVIVRGKIYVFGGCDGDVVYNDLHCFDTVTHEWRVIMSEGAPTPRAAFGMCAGPGDEDFTIACGSNTQFMSAYSDVWSFNTRHRTWTQLFESPKALYGVSICWYGRMLLMYAGTAG 438
            MYSKC+L RH+EWV L T+G+ PCARSG +AV+VR KIYVFGGCDG VVYNDLHC DTVTHEW VI S+G PTPRAAFGMCAGPG EDFTIACGSNTQ+MSA+SD+WS++TRHRTWT++FE+PKALYGVSICW+ R LLMYAGT G
Sbjct:    1 MYSKCILIRHQEWVHLGTYGDRPCARSGQSAVLVRDKIYVFGGCDGVVVYNDLHCLDTVTHEWSVIHSKGGPTPRAAFGMCAGPGAEDFTIACGSNTQYMSAFSDIWSYDTRHRTWTKMFEAPKALYGVSICWHDRTLLMYAGTTG 146
[Close]
BLAST of jgi.p|Trimin1|161799 vs. uniprot
Match: A0A836C6J2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6J2_9STRA)

HSP 1 Score: 245 bits (626), Expect = 1.500e-78
Identity = 112/210 (53.33%), Postives = 148/210 (70.48%), Query Frame = 1 
Query:   34 EWVLLNTFGNPPCARSGHAAVIVRGKIYVFGGCDGDVVYNDLHCFDTVTHEWRVIMSEGAPTPRAAFGMCAGPGDEDFTIACGSNTQFMSAYSDVWSFNTRHRTWTQLFESPKALYGVSICWYGRMLLMYAGTAGLEYCNHLYAFHSLTSSVIKVSTTGVCPSIWYKHESFAVNDDMYVFGGGCFAPTEGRMFISWLDLRSLEWKQVQVQ 663
            EW  L T G  P + SG  A +V  ++Y+FGGCDG+V  ND+HCFD  T++W  I+ +  P+PRAAFGMC+GPG+  FT+ACG   + MSA  D+WSF+ RH TW++LFESP+A+YGV ICWY   LL++ GT G+ Y + LYAF+  T +V  V T+G  PS  YKHESF V +DM+V GGG FAPTE RM +  L+L SL W+ V+V+
Sbjct:    1 EWSQLRTCGKVPSSLSGQGAAVVDERVYMFGGCDGEVALNDVHCFDVQTNKWCAIVCQEGPSPRAAFGMCSGPGEYAFTVACGCGIEQMSALGDMWSFDVRHHTWSKLFESPQAMYGVPICWYDGTLLLHGGTMGVHYSDALYAFNLDTGTVAPVVTSGNGPSKRYKHESFIVGEDMFVCGGGAFAPTERRMDMYRLNLSSLVWRCVKVK 210
[Close]
BLAST of jgi.p|Trimin1|161799 vs. uniprot
Match: A0A835YQY7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQY7_9STRA)

HSP 1 Score: 209 bits (533), Expect = 6.950e-66
Identity = 91/115 (79.13%), Postives = 103/115 (89.57%), Query Frame = 1 
Query:   37 WVLLNTFGNPPCARSGHAAVIVRGKIYVFGGCDGDVVYNDLHCFDTVTHEWRVIMSEGAPTPRAAFGMCAGPGDEDFTIACGSNTQFMSAYSDVWSFNTRHRTWTQLFESPKALY 381
            W+ L+TFG+ PCARSG ++V+V+ KIYVFGGCDG +VYNDLHCFDT THEW VI SEG PTPRAAFGMCAGPG EDFTIACGSNTQ+MSAYSDVWS++TR R WT+LFESPKALY
Sbjct:    1 WLHLHTFGDRPCARSGQSSVVVKDKIYVFGGCDGVIVYNDLHCFDTATHEWSVIHSEGGPTPRAAFGMCAGPGAEDFTIACGSNTQYMSAYSDVWSYDTRRRQWTELFESPKALY 115
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161799 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z6E7_9STRA9.740e-210100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZA21_9STRA1.560e-17485.77Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835Z6H5_9STRA2.400e-15677.53Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z2J9_9STRA6.500e-15684.49Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CDJ9_9STRA1.460e-14572.28Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YN69_9STRA7.140e-9751.72Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CD99_9STRA3.110e-9151.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YYR4_9STRA3.170e-8678.77Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C6J2_9STRA1.500e-7853.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YQY7_9STRA6.950e-6679.13Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:681757..682560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|161799|e_gw1.18.294.1
BRITEko00000,ko04131
KEGG koko:K20285
Descriptionnitrile biosynthetic process
COG categoryP
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0379@1|root,KOG0379@2759|Eukaryota
Evalue5.49e-60
Seed ortholog2880.D7FP90
Hectar predicted targeting categoryother localisation
TranscriptId162121
TrackFilteredModels1
ProteinId161799
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161799gene_1319Tribonema minus UTEX_B_3156 geneContig_18 681757..682560 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1319_1exon_1319_1Tribonema minus UTEX_B_3156 exonContig_18 681757..682560 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1319CDS_1319Tribonema minus UTEX_B_3156 CDSContig_18 681757..682560 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161799Trimin1|161799|e_gw1.18.294.1Tribonema minus UTEX_B_3156 polypeptideContig_18 681757..682560 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1319 ID=mRNA_1319|Name=jgi.p|Trimin1|161799|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=804bp|location=Sequence derived from alignment at Contig_18:681757..682560- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTACTCAAAGTGCCTTTTAAATCGGCATCGAGAATGGGTGCTACTCAA
TACGTTTGGTAATCCTCCATGTGCACGAAGCGGTCACGCCGCAGTTATAG
TCAGGGGCAAAATCTACGTATTTGGTGGCTGTGACGGTGATGTGGTCTAC
AACGACTTGCACTGTTTCGATACAGTCACACATGAGTGGCGTGTGATTAT
GTCAGAGGGAGCGCCAACACCTCGTGCCGCGTTTGGCATGTGTGCGGGGC
CTGGTGACGAGGACTTCACGATTGCATGCGGTAGCAATACGCAATTCATG
AGTGCTTATTCTGACGTATGGTCCTTCAACACTAGGCACCGCACATGGAC
ACAGCTGTTTGAGTCGCCCAAGGCGTTATATGGAGTTTCGATCTGCTGGT
ATGGTCGCATGCTGCTCATGTACGCCGGCACAGCGGGGCTTGAATACTGT
AACCATTTGTATGCGTTCCATTCGCTTACGTCCAGTGTTATTAAGGTCAG
CACAACAGGAGTGTGCCCCTCGATATGGTACAAGCACGAGAGTTTTGCTG
TGAATGATGACATGTATGTGTTTGGCGGTGGCTGCTTTGCACCTACAGAA
GGCCGCATGTTCATTAGCTGGCTCGATCTGAGGTCACTGGAGTGGAAGCA
GGTGCAGGTGCAAAATGACACTTCTATCCCAAGAACAGCCTTTAGCTCCT
GCGTGGGCCCTGAGACATCGAAAGTTTGGGTGTTTGGCGGCTTTGACGCT
GACAACACTTGCTTACAATCCTTTCAAAGCTATGACATGCTGTCAAGAAA
ATGA
back to top

protein sequence of jgi.p|Trimin1|161799

>Trimin1|161799|e_gw1.18.294.1 ID=Trimin1|161799|e_gw1.18.294.1|Name=jgi.p|Trimin1|161799|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=268bp
MYSKCLLNRHREWVLLNTFGNPPCARSGHAAVIVRGKIYVFGGCDGDVVY
NDLHCFDTVTHEWRVIMSEGAPTPRAAFGMCAGPGDEDFTIACGSNTQFM
SAYSDVWSFNTRHRTWTQLFESPKALYGVSICWYGRMLLMYAGTAGLEYC
NHLYAFHSLTSSVIKVSTTGVCPSIWYKHESFAVNDDMYVFGGGCFAPTE
GRMFISWLDLRSLEWKQVQVQNDTSIPRTAFSSCVGPETSKVWVFGGFDA
DNTCLQSFQSYDMLSRK*
back to top

mRNA from alignment at Contig_18:681757..682560-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1319 ID=mRNA_1319|Name=jgi.p|Trimin1|161799|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=804bp|location=Sequence derived from alignment at Contig_18:681757..682560- (Tribonema minus UTEX_B_3156 )
ATGTACTCAAAGTGCCTTTTAAATCGGCATCGAGAATGGGTGCTACTCAA
TACGTTTGGTAATCCTCCATGTGCACGAAGCGGTCACGCCGCAGTTATAG
TCAGGGGCAAAATCTACGTATTTGGTGGCTGTGACGGTGATGTGGTCTAC
AACGACTTGCACTGTTTCGATACAGTCACACATGAGTGGCGTGTGATTAT
GTCAGAGGGAGCGCCAACACCTCGTGCCGCGTTTGGCATGTGTGCGGGGC
CTGGTGACGAGGACTTCACGATTGCATGCGGTAGCAATACGCAATTCATG
AGTGCTTATTCTGACGTATGGTCCTTCAACACTAGGCACCGCACATGGAC
ACAGCTGTTTGAGTCGCCCAAGGCGTTATATGGAGTTTCGATCTGCTGGT
ATGGTCGCATGCTGCTCATGTACGCCGGCACAGCGGGGCTTGAATACTGT
AACCATTTGTATGCGTTCCATTCGCTTACGTCCAGTGTTATTAAGGTCAG
CACAACAGGAGTGTGCCCCTCGATATGGTACAAGCACGAGAGTTTTGCTG
TGAATGATGACATGTATGTGTTTGGCGGTGGCTGCTTTGCACCTACAGAA
GGCCGCATGTTCATTAGCTGGCTCGATCTGAGGTCACTGGAGTGGAAGCA
GGTGCAGGTGCAAAATGACACTTCTATCCCAAGAACAGCCTTTAGCTCCT
GCGTGGGCCCTGAGACATCGAAAGTTTGGGTGTTTGGCGGCTTTGACGCT
GACAACACTTGCTTACAATCCTTTCAAAGCTATGACATGCTGTCAAGAAA
ATGA
back to top

Coding sequence (CDS) from alignment at Contig_18:681757..682560-

>mRNA_1319 ID=mRNA_1319|Name=jgi.p|Trimin1|161799|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=804bp|location=Sequence derived from alignment at Contig_18:681757..682560- (Tribonema minus UTEX_B_3156 )
ATGTACTCAAAGTGCCTTTTAAATCGGCATCGAGAATGGGTGCTACTCAA
TACGTTTGGTAATCCTCCATGTGCACGAAGCGGTCACGCCGCAGTTATAG
TCAGGGGCAAAATCTACGTATTTGGTGGCTGTGACGGTGATGTGGTCTAC
AACGACTTGCACTGTTTCGATACAGTCACACATGAGTGGCGTGTGATTAT
GTCAGAGGGAGCGCCAACACCTCGTGCCGCGTTTGGCATGTGTGCGGGGC
CTGGTGACGAGGACTTCACGATTGCATGCGGTAGCAATACGCAATTCATG
AGTGCTTATTCTGACGTATGGTCCTTCAACACTAGGCACCGCACATGGAC
ACAGCTGTTTGAGTCGCCCAAGGCGTTATATGGAGTTTCGATCTGCTGGT
ATGGTCGCATGCTGCTCATGTACGCCGGCACAGCGGGGCTTGAATACTGT
AACCATTTGTATGCGTTCCATTCGCTTACGTCCAGTGTTATTAAGGTCAG
CACAACAGGAGTGTGCCCCTCGATATGGTACAAGCACGAGAGTTTTGCTG
TGAATGATGACATGTATGTGTTTGGCGGTGGCTGCTTTGCACCTACAGAA
GGCCGCATGTTCATTAGCTGGCTCGATCTGAGGTCACTGGAGTGGAAGCA
GGTGCAGGTGCAAAATGACACTTCTATCCCAAGAACAGCCTTTAGCTCCT
GCGTGGGCCCTGAGACATCGAAAGTTTGGGTGTTTGGCGGCTTTGACGCT
GACAACACTTGCTTACAATCCTTTCAAAGCTATGACATGCTGTCAAGAAA
ATGA
back to top