mRNA_13197 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|174372 vs. uniprot
Match: A0A835ZEL4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEL4_9STRA) HSP 1 Score: 409 bits (1050), Expect = 2.470e-144 Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 1
Query: 1 MQQQPLYANGDGGQQQPAQQPQPLGGGDGSEIGKIFVGGIAWQTTDSALRYYFERFGELDDIALMKDKMTGQPRGFGFIKFKDPAIAEVVLGQEHNIDGRIVDVKRATPRQQNAGPAPSRSAPPARGNGPPSMKIFVGGLEQSVDDPAFRAHFEQFGVITDSVIMYDRVTKRSRGFGFITFENQGSVQVRESLALCAHAPIEC 609
MQQQPLYANGDGGQQQPAQQPQPLGGGDGSEIGKIFVGGIAWQTTDSALRYYFERFGELDDIALMKDKMTGQPRGFGFIKFKDPAIAEVVLGQEHNIDGRIVDVKRATPRQQNAGPAPSRSAPPARGNGPPSMKIFVGGLEQSVDDPAFRAHFEQFGVITDSVIMYDRVTKRSRGFGFITFENQGSVQVRESLALCAHAPIEC
Sbjct: 1 MQQQPLYANGDGGQQQPAQQPQPLGGGDGSEIGKIFVGGIAWQTTDSALRYYFERFGELDDIALMKDKMTGQPRGFGFIKFKDPAIAEVVLGQEHNIDGRIVDVKRATPRQQNAGPAPSRSAPPARGNGPPSMKIFVGGLEQSVDDPAFRAHFEQFGVITDSVIMYDRVTKRSRGFGFITFENQGSVQVRESLALCAHAPIEC 203
BLAST of jgi.p|Trimin1|174372 vs. uniprot
Match: A0A836CCM9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCM9_9STRA) HSP 1 Score: 199 bits (506), Expect = 5.200e-59 Identity = 97/161 (60.25%), Postives = 123/161 (76.40%), Query Frame = 1
Query: 82 DGSEIGKIFVGGIAWQTTDSALRYYFERFGELDDIALMKDKMTGQPRGFGFIKFKDPAIAEVVLGQEHNIDGRIVDVKRATPRQQNAGPAPSRSAPPARGNGPPSMKIFVGGLEQSVDDPAFRAHFEQFGVITDSVIMYDRVTKRSRGFGFITFENQGSVQ 564
D SE GK+FVGGI W TTD+ L+ YFE+FG +++IALMKDK+TG PRGF FIKFKDPA+ E V+ Q+H IDGR VDVK+A PR Q R AP A P S+KIFVGGL+Q+V+D FR HFE++G ++D VIMYD++TKRSRGFGF+TFE + ++
Sbjct: 122 DDSE-GKVFVGGIGWSTTDAVLKVYFEKFGVVEEIALMKDKLTGHPRGFAFIKFKDPAVTETVVTQQHIIDGRNVDVKKAVPRSQKE----RRDAPKA----PTSLKIFVGGLDQAVNDEDFRKHFEKYGKVSDCVIMYDKITKRSRGFGFVTFEAEADIK 273
BLAST of jgi.p|Trimin1|174372 vs. uniprot
Match: A0A836CMD2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMD2_9STRA) HSP 1 Score: 191 bits (485), Expect = 1.580e-58 Identity = 97/162 (59.88%), Postives = 119/162 (73.46%), Query Frame = 1
Query: 82 DGSEIGKIFVGGIAWQTTDSALRYYFERFGELDDIALMKDKMTGQPRGFGFIKFKDPAIAEVVLGQ-EHNIDGRIVDVKRATPRQQNAGPAPSRSAPPARGNGPPSMKIFVGGLEQSVDDPAFRAHFEQFGVITDSVIMYDRVTKRSRGFGFITFENQGSVQ 564
D +GKIFVGGI+WQT+D +L YF +FG L D+ALMKDK TGQPRGFGFIKF+DPA+ +VVL Q EH+IDGR VDVKRA P+ + P PSR+A PA N K+FVGGL SV FR +FE FG ++D+V+M+DR T RSRGFGF+TF+ VQ
Sbjct: 18 DNDILGKIFVGGISWQTSDESLSKYFSKFGALADVALMKDKYTGQPRGFGFIKFEDPAVVDVVLTQAEHSIDGRTVDVKRAVPKSE--APGPSRTARPADTN-----KVFVGGLAPSVTVAEFRTYFEGFGAVSDAVVMFDRQTLRSRGFGFVTFQEDSVVQ 172
BLAST of jgi.p|Trimin1|174372 vs. uniprot
Match: A0A7S2XZ50_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ50_9STRA) HSP 1 Score: 192 bits (489), Expect = 2.450e-57 Identity = 90/156 (57.69%), Postives = 118/156 (75.64%), Query Frame = 1
Query: 97 GKIFVGGIAWQTTDSALRYYFERFGELDDIALMKDKMTGQPRGFGFIKFKDPAIAEVVLGQEHNIDGRIVDVKRATPRQQNAGPAPSRSAPPARGNGPPSMKIFVGGLEQSVDDPAFRAHFEQFGVITDSVIMYDRVTKRSRGFGFITFENQGSVQ 564
GK+F+GG++WQTT+ LRYYFE+FGEL D+A+MKDK TGQPRGFGF+ FKD ++ E VLGQ H +DGR VD KRA R+++ SAP G G S KIFVGGL SV++ FR +F++FG ITD+V+M DR T RSRGFGF+T++++ SV+
Sbjct: 5 GKVFIGGVSWQTTEDGLRYYFEKFGELTDVAVMKDKFTGQPRGFGFVTFKDTSVVEKVLGQTHTLDGRQVDCKRAVRREES-------SAPRGGGYGGESKKIFVGGLAPSVEEDDFRGYFDKFGTITDAVVMMDRNTGRSRGFGFVTYDDESSVR 153
BLAST of jgi.p|Trimin1|174372 vs. uniprot
Match: A0A835ZAL5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAL5_9STRA) HSP 1 Score: 181 bits (460), Expect = 6.320e-53 Identity = 92/165 (55.76%), Postives = 120/165 (72.73%), Query Frame = 1
Query: 82 DGSEIGKIFVG---GIAWQTTDSALRYYFERFGELDDIALMKDKMTGQPRGFGFIKFKDPAIAEVVLGQ-EHNIDGRIVDVKRATPRQQNAGPAPSRSAPPARGNGPPSMKIFVGGLEQSVDDPAFRAHFEQFGVITDSVIMYDRVTKRSRGFGFITFENQGSVQ 564
D GK+FVG GI+WQT++ +L Y+F +FG L D+ALMKDK TGQPRGFGFIKF+DP++ + VL Q EHNIDGR+VDVKRA P+ + GPA R+ A N K+FVGGL SV FR +FE FG ++D+V+M+DR T+RSRGFGF+TF+++ VQ
Sbjct: 10 DSDVTGKLFVGKSSGISWQTSEESLSYHFSKFGALADVALMKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSEAPGPA--RATRQADFN-----KVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQ 167
BLAST of jgi.p|Trimin1|174372 vs. uniprot
Match: A0A6U1NHM7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NHM7_9STRA) HSP 1 Score: 175 bits (444), Expect = 1.070e-51 Identity = 85/156 (54.49%), Postives = 115/156 (73.72%), Query Frame = 1
Query: 100 KIFVGGIAWQTTDSALRYYFERFGELDDIALMKDKMTGQPRGFGFIKFKDPA-IAEVVLGQEHNIDGRIVDVKRATPRQQNAGPAPSRSAPPARGNGPPSMKIFVGGLEQSVDDPAFRAHFEQFGVITDSVIMYDRVTKRSRGFGFITFENQGSVQ 564
KIFVGG++W TT+ LRYYFE++GE++ + LMKD+MTGQPRGFGF+KFKD + I++ + H IDGR VDVK+A PR++ + S P G ++KIFVGGL SV + F+ HFEQ+G +TD+V+M DR T+RSRGFGFIT+EN+ V+
Sbjct: 50 KIFVGGVSWMTTEDGLRYYFEKYGEVESVNLMKDRMTGQPRGFGFVKFKDRSVISKCLTVATHQIDGRHVDVKQAVPREKTQQNRNATSTGPG-GRPVEALKIFVGGLAPSVTEDDFKRHFEQYGKVTDAVVMIDRKTQRSRGFGFITYENEEGVK 204
BLAST of jgi.p|Trimin1|174372 vs. uniprot
Match: D7FW71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW71_ECTSI) HSP 1 Score: 180 bits (456), Expect = 1.100e-50 Identity = 88/160 (55.00%), Postives = 115/160 (71.88%), Query Frame = 1
Query: 82 DGSEIGKIFVGGIAWQTTDSALRYYFERFGELDDIALMKDKMTGQPRGFGFIKFKDPAIAEVVLGQEHNIDGRIVDVKRATPRQQNAGPAPSRSAPPARGNGPPSMKIFVGGLEQSVDDPAFRAHFEQFGVITDSVIMYDRVTKRSRGFGFITFENQGSV 561
D GK+F+GGI+WQTT+ LR++F ++G L DIALMKDK TG PRGFGFIKF+D + + +L QEH IDG++VDVKRA P+ + GP+ SRS+ PA N KIFVGGL +V FR +FE FG + D+V+M+DR T+RSRGFGF+TF+ V
Sbjct: 143 DNDVEGKLFIGGISWQTTEEGLRHHFGKYGTLADIALMKDKYTGHPRGFGFIKFEDITVLDEILSQEHKIDGKVVDVKRAVPKSEAPGPS-SRSSRPAETN-----KIFVGGLAPTVMMAEFRKYFETFGGVVDAVVMFDRQTQRSRGFGFVTFQEDAVV 296
BLAST of jgi.p|Trimin1|174372 vs. uniprot
Match: H3G7Q1_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=H3G7Q1_PHYRM) HSP 1 Score: 169 bits (428), Expect = 1.600e-50 Identity = 83/157 (52.87%), Postives = 112/157 (71.34%), Query Frame = 1
Query: 82 DGSEIGKIFVGGIAWQTTDSALRYYFERFGELDDIALMKDKMTGQPRGFGFIKFKDPAIAEVVLGQEHNIDGRIVDVKRATPRQQNAGPAPSRSAPPARGNGPPSMKIFVGGLEQSVDDPAFRAHFEQFGVITDSVIMYDRVTKRSRGFGFITFENQ 552
DG + GK+F+GG++W+TT+ LR +F ++GEL D ALMKDK TGQPRGFGF+ F D + + VL + H +DGR V+VKRA PR+ R+AP +R KIFVGGL +V + FR +FE++G ITD+V+M DR T+RSRGFGFITFE++
Sbjct: 1 DGPQPGKLFIGGVSWETTEDTLRQHFGKYGELTDAALMKDKYTGQPRGFGFVTFADASAIDRVLDETHTLDGRSVEVKRAIPRE--------RTAPGSR-----LKKIFVGGLAPTVTEQDFRHYFEEYGKITDAVVMIDRDTQRSRGFGFITFEDE 144
BLAST of jgi.p|Trimin1|174372 vs. uniprot
Match: F0WG76_9STRA (Uncharacterized protein AlNc14C88G5606 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WG76_9STRA) HSP 1 Score: 176 bits (447), Expect = 1.130e-49 Identity = 96/188 (51.06%), Postives = 126/188 (67.02%), Query Frame = 1
Query: 19 YANGD-GGQQQPAQQPQPLGGGDGSEIGKIFVGGIAWQTTDSALRYYFERFGELDDIALMKDKMTGQPRGFGFIKFKDPAIAEVVLGQEHNIDGRIVDVKRATPRQQNA-GPAPSRSAPP-ARGNG----PPSMKIFVGGLEQSVDDPAFRAHFEQFGVITDSVIMYDRVTKRSRGFGFITFENQGSV 561
YAN D G Q+QP GK+F+GG++W+TT+ LR +F ++G L D ALMKDK +GQPRGFGF+ F D A+ + VL + H IDGR V+VKRA PR + A GP+ RS+ RGN S K+FVGGL SV + FR +FE+FG ITD+V+M+DR T+RSRGFGF+TFE +G+V
Sbjct: 90 YANADTGAQKQP---------------GKLFIGGVSWETTEETLRDHFGKYGPLTDAALMKDKFSGQPRGFGFVTFADVAVLDRVLEESHTIDGRTVEVKRAIPRDKTASGPSDVRSSGAHGRGNSGGVITESKKVFVGGLPPSVTEQDFRRYFEEFGRITDAVVMFDRETQRSRGFGFVTFEEEGAV 262
BLAST of jgi.p|Trimin1|174372 vs. uniprot
Match: D8RTI0_SELML (Uncharacterized protein (Fragment) n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RTI0_SELML) HSP 1 Score: 168 bits (425), Expect = 1.750e-49 Identity = 80/163 (49.08%), Postives = 118/163 (72.39%), Query Frame = 1
Query: 88 SEIGKIFVGGIAWQTTDSALRYYFERFGELDDIALMKDKMTGQPRGFGFIKFKDPAIAEVVLGQEHNIDGRIVDVKRATPR-QQNAGPAPSRSA---PPARGNGPPSMKIFVGGLEQSVDDPAFRAHFEQFGVITDSVIMYDRVTKRSRGFGFITFENQGSVQ 564
S+ GK+F+GGI+W+TT+ LR YF+R+GE+ + +MKD+ TG+ RGFGF+ F DP+ A++ + ++H I+GR+V+ K+A PR +Q P S S+ P G G + KIFVGGL +V + FR +FEQFG I+D+V+MYD T+R RGFGFITF+++ SV+
Sbjct: 3 SDQGKLFIGGISWETTEEQLRDYFQRYGEIAETMIMKDRNTGRARGFGFVSFADPSAADMAVAEKHTINGRLVEAKKAVPRDEQQTIPRSSISSGGQSPGGGQGR-TKKIFVGGLASTVTEEEFRGYFEQFGTISDAVVMYDHTTQRPRGFGFITFDSEDSVE 164 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174372 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13197 ID=mRNA_13197|Name=jgi.p|Trimin1|174372|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=612bp|location=Sequence derived from alignment at Contig_113:321081..322828- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCAGCAGCAGCCATTGTACGCCAATGGCGATGGAGGGCAGCAGCAGCCback to top protein sequence of jgi.p|Trimin1|174372 >Trimin1|174372|e_gw1.113.6.1 ID=Trimin1|174372|e_gw1.113.6.1|Name=jgi.p|Trimin1|174372|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=204bp MQQQPLYANGDGGQQQPAQQPQPLGGGDGSEIGKIFVGGIAWQTTDSALRback to top mRNA from alignment at Contig_113:321081..322828- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_13197 ID=mRNA_13197|Name=jgi.p|Trimin1|174372|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1748bp|location=Sequence derived from alignment at Contig_113:321081..322828- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_113:321081..322828- >mRNA_13197 ID=mRNA_13197|Name=jgi.p|Trimin1|174372|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=612bp|location=Sequence derived from alignment at Contig_113:321081..322828- (Tribonema minus UTEX_B_3156 )back to top |