mRNA_13197 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|174372
Unique NamemRNA_13197
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|174372 vs. uniprot
Match: A0A835ZEL4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEL4_9STRA)

HSP 1 Score: 409 bits (1050), Expect = 2.470e-144
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 1
Query:    1 MQQQPLYANGDGGQQQPAQQPQPLGGGDGSEIGKIFVGGIAWQTTDSALRYYFERFGELDDIALMKDKMTGQPRGFGFIKFKDPAIAEVVLGQEHNIDGRIVDVKRATPRQQNAGPAPSRSAPPARGNGPPSMKIFVGGLEQSVDDPAFRAHFEQFGVITDSVIMYDRVTKRSRGFGFITFENQGSVQVRESLALCAHAPIEC 609
            MQQQPLYANGDGGQQQPAQQPQPLGGGDGSEIGKIFVGGIAWQTTDSALRYYFERFGELDDIALMKDKMTGQPRGFGFIKFKDPAIAEVVLGQEHNIDGRIVDVKRATPRQQNAGPAPSRSAPPARGNGPPSMKIFVGGLEQSVDDPAFRAHFEQFGVITDSVIMYDRVTKRSRGFGFITFENQGSVQVRESLALCAHAPIEC
Sbjct:    1 MQQQPLYANGDGGQQQPAQQPQPLGGGDGSEIGKIFVGGIAWQTTDSALRYYFERFGELDDIALMKDKMTGQPRGFGFIKFKDPAIAEVVLGQEHNIDGRIVDVKRATPRQQNAGPAPSRSAPPARGNGPPSMKIFVGGLEQSVDDPAFRAHFEQFGVITDSVIMYDRVTKRSRGFGFITFENQGSVQVRESLALCAHAPIEC 203          
BLAST of jgi.p|Trimin1|174372 vs. uniprot
Match: A0A836CCM9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCM9_9STRA)

HSP 1 Score: 199 bits (506), Expect = 5.200e-59
Identity = 97/161 (60.25%), Postives = 123/161 (76.40%), Query Frame = 1
Query:   82 DGSEIGKIFVGGIAWQTTDSALRYYFERFGELDDIALMKDKMTGQPRGFGFIKFKDPAIAEVVLGQEHNIDGRIVDVKRATPRQQNAGPAPSRSAPPARGNGPPSMKIFVGGLEQSVDDPAFRAHFEQFGVITDSVIMYDRVTKRSRGFGFITFENQGSVQ 564
            D SE GK+FVGGI W TTD+ L+ YFE+FG +++IALMKDK+TG PRGF FIKFKDPA+ E V+ Q+H IDGR VDVK+A PR Q       R AP A    P S+KIFVGGL+Q+V+D  FR HFE++G ++D VIMYD++TKRSRGFGF+TFE +  ++
Sbjct:  122 DDSE-GKVFVGGIGWSTTDAVLKVYFEKFGVVEEIALMKDKLTGHPRGFAFIKFKDPAVTETVVTQQHIIDGRNVDVKKAVPRSQKE----RRDAPKA----PTSLKIFVGGLDQAVNDEDFRKHFEKYGKVSDCVIMYDKITKRSRGFGFVTFEAEADIK 273          
BLAST of jgi.p|Trimin1|174372 vs. uniprot
Match: A0A836CMD2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMD2_9STRA)

HSP 1 Score: 191 bits (485), Expect = 1.580e-58
Identity = 97/162 (59.88%), Postives = 119/162 (73.46%), Query Frame = 1
Query:   82 DGSEIGKIFVGGIAWQTTDSALRYYFERFGELDDIALMKDKMTGQPRGFGFIKFKDPAIAEVVLGQ-EHNIDGRIVDVKRATPRQQNAGPAPSRSAPPARGNGPPSMKIFVGGLEQSVDDPAFRAHFEQFGVITDSVIMYDRVTKRSRGFGFITFENQGSVQ 564
            D   +GKIFVGGI+WQT+D +L  YF +FG L D+ALMKDK TGQPRGFGFIKF+DPA+ +VVL Q EH+IDGR VDVKRA P+ +   P PSR+A PA  N     K+FVGGL  SV    FR +FE FG ++D+V+M+DR T RSRGFGF+TF+    VQ
Sbjct:   18 DNDILGKIFVGGISWQTSDESLSKYFSKFGALADVALMKDKYTGQPRGFGFIKFEDPAVVDVVLTQAEHSIDGRTVDVKRAVPKSE--APGPSRTARPADTN-----KVFVGGLAPSVTVAEFRTYFEGFGAVSDAVVMFDRQTLRSRGFGFVTFQEDSVVQ 172          
BLAST of jgi.p|Trimin1|174372 vs. uniprot
Match: A0A7S2XZ50_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ50_9STRA)

HSP 1 Score: 192 bits (489), Expect = 2.450e-57
Identity = 90/156 (57.69%), Postives = 118/156 (75.64%), Query Frame = 1
Query:   97 GKIFVGGIAWQTTDSALRYYFERFGELDDIALMKDKMTGQPRGFGFIKFKDPAIAEVVLGQEHNIDGRIVDVKRATPRQQNAGPAPSRSAPPARGNGPPSMKIFVGGLEQSVDDPAFRAHFEQFGVITDSVIMYDRVTKRSRGFGFITFENQGSVQ 564
            GK+F+GG++WQTT+  LRYYFE+FGEL D+A+MKDK TGQPRGFGF+ FKD ++ E VLGQ H +DGR VD KRA  R+++       SAP   G G  S KIFVGGL  SV++  FR +F++FG ITD+V+M DR T RSRGFGF+T++++ SV+
Sbjct:    5 GKVFIGGVSWQTTEDGLRYYFEKFGELTDVAVMKDKFTGQPRGFGFVTFKDTSVVEKVLGQTHTLDGRQVDCKRAVRREES-------SAPRGGGYGGESKKIFVGGLAPSVEEDDFRGYFDKFGTITDAVVMMDRNTGRSRGFGFVTYDDESSVR 153          
BLAST of jgi.p|Trimin1|174372 vs. uniprot
Match: A0A835ZAL5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAL5_9STRA)

HSP 1 Score: 181 bits (460), Expect = 6.320e-53
Identity = 92/165 (55.76%), Postives = 120/165 (72.73%), Query Frame = 1
Query:   82 DGSEIGKIFVG---GIAWQTTDSALRYYFERFGELDDIALMKDKMTGQPRGFGFIKFKDPAIAEVVLGQ-EHNIDGRIVDVKRATPRQQNAGPAPSRSAPPARGNGPPSMKIFVGGLEQSVDDPAFRAHFEQFGVITDSVIMYDRVTKRSRGFGFITFENQGSVQ 564
            D    GK+FVG   GI+WQT++ +L Y+F +FG L D+ALMKDK TGQPRGFGFIKF+DP++ + VL Q EHNIDGR+VDVKRA P+ +  GPA  R+   A  N     K+FVGGL  SV    FR +FE FG ++D+V+M+DR T+RSRGFGF+TF+++  VQ
Sbjct:   10 DSDVTGKLFVGKSSGISWQTSEESLSYHFSKFGALADVALMKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSEAPGPA--RATRQADFN-----KVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQ 167          
BLAST of jgi.p|Trimin1|174372 vs. uniprot
Match: A0A6U1NHM7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NHM7_9STRA)

HSP 1 Score: 175 bits (444), Expect = 1.070e-51
Identity = 85/156 (54.49%), Postives = 115/156 (73.72%), Query Frame = 1
Query:  100 KIFVGGIAWQTTDSALRYYFERFGELDDIALMKDKMTGQPRGFGFIKFKDPA-IAEVVLGQEHNIDGRIVDVKRATPRQQNAGPAPSRSAPPARGNGPPSMKIFVGGLEQSVDDPAFRAHFEQFGVITDSVIMYDRVTKRSRGFGFITFENQGSVQ 564
            KIFVGG++W TT+  LRYYFE++GE++ + LMKD+MTGQPRGFGF+KFKD + I++ +    H IDGR VDVK+A PR++      + S  P  G    ++KIFVGGL  SV +  F+ HFEQ+G +TD+V+M DR T+RSRGFGFIT+EN+  V+
Sbjct:   50 KIFVGGVSWMTTEDGLRYYFEKYGEVESVNLMKDRMTGQPRGFGFVKFKDRSVISKCLTVATHQIDGRHVDVKQAVPREKTQQNRNATSTGPG-GRPVEALKIFVGGLAPSVTEDDFKRHFEQYGKVTDAVVMIDRKTQRSRGFGFITYENEEGVK 204          
BLAST of jgi.p|Trimin1|174372 vs. uniprot
Match: D7FW71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW71_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 1.100e-50
Identity = 88/160 (55.00%), Postives = 115/160 (71.88%), Query Frame = 1
Query:   82 DGSEIGKIFVGGIAWQTTDSALRYYFERFGELDDIALMKDKMTGQPRGFGFIKFKDPAIAEVVLGQEHNIDGRIVDVKRATPRQQNAGPAPSRSAPPARGNGPPSMKIFVGGLEQSVDDPAFRAHFEQFGVITDSVIMYDRVTKRSRGFGFITFENQGSV 561
            D    GK+F+GGI+WQTT+  LR++F ++G L DIALMKDK TG PRGFGFIKF+D  + + +L QEH IDG++VDVKRA P+ +  GP+ SRS+ PA  N     KIFVGGL  +V    FR +FE FG + D+V+M+DR T+RSRGFGF+TF+    V
Sbjct:  143 DNDVEGKLFIGGISWQTTEEGLRHHFGKYGTLADIALMKDKYTGHPRGFGFIKFEDITVLDEILSQEHKIDGKVVDVKRAVPKSEAPGPS-SRSSRPAETN-----KIFVGGLAPTVMMAEFRKYFETFGGVVDAVVMFDRQTQRSRGFGFVTFQEDAVV 296          
BLAST of jgi.p|Trimin1|174372 vs. uniprot
Match: H3G7Q1_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=H3G7Q1_PHYRM)

HSP 1 Score: 169 bits (428), Expect = 1.600e-50
Identity = 83/157 (52.87%), Postives = 112/157 (71.34%), Query Frame = 1
Query:   82 DGSEIGKIFVGGIAWQTTDSALRYYFERFGELDDIALMKDKMTGQPRGFGFIKFKDPAIAEVVLGQEHNIDGRIVDVKRATPRQQNAGPAPSRSAPPARGNGPPSMKIFVGGLEQSVDDPAFRAHFEQFGVITDSVIMYDRVTKRSRGFGFITFENQ 552
            DG + GK+F+GG++W+TT+  LR +F ++GEL D ALMKDK TGQPRGFGF+ F D +  + VL + H +DGR V+VKRA PR+        R+AP +R       KIFVGGL  +V +  FR +FE++G ITD+V+M DR T+RSRGFGFITFE++
Sbjct:    1 DGPQPGKLFIGGVSWETTEDTLRQHFGKYGELTDAALMKDKYTGQPRGFGFVTFADASAIDRVLDETHTLDGRSVEVKRAIPRE--------RTAPGSR-----LKKIFVGGLAPTVTEQDFRHYFEEYGKITDAVVMIDRDTQRSRGFGFITFEDE 144          
BLAST of jgi.p|Trimin1|174372 vs. uniprot
Match: F0WG76_9STRA (Uncharacterized protein AlNc14C88G5606 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WG76_9STRA)

HSP 1 Score: 176 bits (447), Expect = 1.130e-49
Identity = 96/188 (51.06%), Postives = 126/188 (67.02%), Query Frame = 1
Query:   19 YANGD-GGQQQPAQQPQPLGGGDGSEIGKIFVGGIAWQTTDSALRYYFERFGELDDIALMKDKMTGQPRGFGFIKFKDPAIAEVVLGQEHNIDGRIVDVKRATPRQQNA-GPAPSRSAPP-ARGNG----PPSMKIFVGGLEQSVDDPAFRAHFEQFGVITDSVIMYDRVTKRSRGFGFITFENQGSV 561
            YAN D G Q+QP               GK+F+GG++W+TT+  LR +F ++G L D ALMKDK +GQPRGFGF+ F D A+ + VL + H IDGR V+VKRA PR + A GP+  RS+    RGN       S K+FVGGL  SV +  FR +FE+FG ITD+V+M+DR T+RSRGFGF+TFE +G+V
Sbjct:   90 YANADTGAQKQP---------------GKLFIGGVSWETTEETLRDHFGKYGPLTDAALMKDKFSGQPRGFGFVTFADVAVLDRVLEESHTIDGRTVEVKRAIPRDKTASGPSDVRSSGAHGRGNSGGVITESKKVFVGGLPPSVTEQDFRRYFEEFGRITDAVVMFDRETQRSRGFGFVTFEEEGAV 262          
BLAST of jgi.p|Trimin1|174372 vs. uniprot
Match: D8RTI0_SELML (Uncharacterized protein (Fragment) n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RTI0_SELML)

HSP 1 Score: 168 bits (425), Expect = 1.750e-49
Identity = 80/163 (49.08%), Postives = 118/163 (72.39%), Query Frame = 1
Query:   88 SEIGKIFVGGIAWQTTDSALRYYFERFGELDDIALMKDKMTGQPRGFGFIKFKDPAIAEVVLGQEHNIDGRIVDVKRATPR-QQNAGPAPSRSA---PPARGNGPPSMKIFVGGLEQSVDDPAFRAHFEQFGVITDSVIMYDRVTKRSRGFGFITFENQGSVQ 564
            S+ GK+F+GGI+W+TT+  LR YF+R+GE+ +  +MKD+ TG+ RGFGF+ F DP+ A++ + ++H I+GR+V+ K+A PR +Q   P  S S+    P  G G  + KIFVGGL  +V +  FR +FEQFG I+D+V+MYD  T+R RGFGFITF+++ SV+
Sbjct:    3 SDQGKLFIGGISWETTEEQLRDYFQRYGEIAETMIMKDRNTGRARGFGFVSFADPSAADMAVAEKHTINGRLVEAKKAVPRDEQQTIPRSSISSGGQSPGGGQGR-TKKIFVGGLASTVTEEEFRGYFEQFGTISDAVVMYDHTTQRPRGFGFITFDSEDSVE 164          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174372 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZEL4_9STRA2.470e-144100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CCM9_9STRA5.200e-5960.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CMD2_9STRA1.580e-5859.88Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2XZ50_9STRA2.450e-5757.69Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A835ZAL5_9STRA6.320e-5355.76Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A6U1NHM7_9STRA1.070e-5154.49Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
D7FW71_ECTSI1.100e-5055.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
H3G7Q1_PHYRM1.600e-5052.87Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
F0WG76_9STRA1.130e-4951.06Uncharacterized protein AlNc14C88G5606 n=1 Tax=Alb... [more]
D8RTI0_SELML1.750e-4949.08Uncharacterized protein (Fragment) n=3 Tax=Selagin... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_113contigContig_113:321081..322828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|174372|e_gw1.113.6.1
BRITEko00000,ko00001,ko03019
KEGG Pathwayko03015,map03015
KEGG koko:K14411
Descriptionpoly(U) RNA binding
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG4205@1|root,KOG4205@2759|Eukaryota
Evalue1.8e-51
Seed ortholog2880.D7FW71
Hectar predicted targeting categoryother localisation
TranscriptId174694
TrackFilteredModels1
ProteinId174372
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174372gene_13197Tribonema minus UTEX_B_3156 geneContig_113 321081..322828 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174372Trimin1|174372|e_gw1.113.6.1Tribonema minus UTEX_B_3156 polypeptideContig_113 321081..322828 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13197_3exon_13197_3Tribonema minus UTEX_B_3156 exonContig_113 321081..321336 -
exon_13197_2exon_13197_2Tribonema minus UTEX_B_3156 exonContig_113 321928..322027 -
exon_13197_1exon_13197_1Tribonema minus UTEX_B_3156 exonContig_113 322573..322828 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13197CDS_13197Tribonema minus UTEX_B_3156 CDSContig_113 322573..322828 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13197 ID=mRNA_13197|Name=jgi.p|Trimin1|174372|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=612bp|location=Sequence derived from alignment at Contig_113:321081..322828- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCAGCAGCCATTGTACGCCAATGGCGATGGAGGGCAGCAGCAGCC
TGCGCAGCAGCCGCAGCCTCTGGGCGGCGGCGACGGCAGCGAGATCGGCA
AGATCTTTGTGGGCGGCATTGCCTGGCAGACCACCGACTCCGCCTTGCGC
TACTACTTCGAGCGCTTTGGGGAGCTGGATGATATCGCCCTGATGAAGGA
CAAGATGACGGGGCAGCCTAGGGGCTTTGGCTTCATCAAGTTCAAGGATC
CCGCAATCGCCGAGGTTGTCCTAGGTCAAGAGCATAACATCGATGGCAGA
ATCGTGGATGTCAAGAGAGCTACTCCTCGCCAGCAGAACGCGGGACCCGC
TCCTAGCAGGAGCGCGCCGCCCGCGCGCGGCAACGGCCCGCCCAGCATGA
AGATCTTTGTGGGCGGCCTCGAGCAGAGCGTCGACGACCCGGCGTTCCGC
GCGCACTTTGAGCAGTTCGGCGTGATCACCGACTCGGTCATCATGTACGA
CCGCGTGACCAAGCGCTCGCGCGGCTTCGGCTTCATCACGTTCGAGAACC
AGGGGTCCGTGCAGGTGAGAGAGTCGCTTGCGCTTTGCGCGCACGCGCCC
ATTGAGTGCTGA
back to top

protein sequence of jgi.p|Trimin1|174372

>Trimin1|174372|e_gw1.113.6.1 ID=Trimin1|174372|e_gw1.113.6.1|Name=jgi.p|Trimin1|174372|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=204bp
MQQQPLYANGDGGQQQPAQQPQPLGGGDGSEIGKIFVGGIAWQTTDSALR
YYFERFGELDDIALMKDKMTGQPRGFGFIKFKDPAIAEVVLGQEHNIDGR
IVDVKRATPRQQNAGPAPSRSAPPARGNGPPSMKIFVGGLEQSVDDPAFR
AHFEQFGVITDSVIMYDRVTKRSRGFGFITFENQGSVQVRESLALCAHAP
IEC*
back to top

mRNA from alignment at Contig_113:321081..322828-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13197 ID=mRNA_13197|Name=jgi.p|Trimin1|174372|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1748bp|location=Sequence derived from alignment at Contig_113:321081..322828- (Tribonema minus UTEX_B_3156 )
ATGCAGCAGCAGCCATTGTACGCCAATGGCGATGGAGGGCAGCAGCAGCC TGCGCAGCAGCCGCAGCCTCTGGGCGGCGGCGACGGCAGCGAGATCGGCA AGATCTTTGTGGGCGGCATTGCCTGGCAGACCACCGACTCCGCCTTGCGC TACTACTTCGAGCGCTTTGGGGAGCTGGATGATATCGCCCTGATGAAGGA CAAGATGACGGGGCAGCCTAGGGGCTTTGGCTTCATCAAGTTCAAGGATC CCGCAAGTGAGTTGGCAGTGCAAGCTCACTGCCATCATGCCTTTTGCCTT GGCTAGGGTCGTCGTGCTGGCGGGCACTGTGGTTTGTCCGTTGGATTCTG TTGTGGTGTTGCTCACCCGCTCCGTTCGGTTGCTTGCTGTGTTGCGATAG CCTTGGAATGTTTGGGGCTGCTCGTCTGCCGTTCATACTTCTTCGTTGTC TGCTAGCAGGTGCTTTCTCTTGTAGGGCCAGGTCTTTCTGCTCCTAGGTG TAAGAGCCGTTATCCTTTGAGTGCCAAAAAACCTCAAGCGCACTGGGGCA CAGCGAAGAGGACGGGCCAGCGATGGAAGCGACGTTCATATTTCATCCTG TAATCCATGTTTTGGCTCGTGATGTTGGCGTTGCCGTTGAATGTTGGCGT ATGTATCTTTGCAATTTCGCCGATGTTTCTGTTTGTACTTTTCCTATTTC TCGCGCGGAGGCAGTGCGTTGGCAAGCCGGTAACATTCACCTTCTGCTCC TGCTTTCCTCCGTTGTGTTCTTATGACTGGGCCTCGCGTTGCGTCGCGTA GTCGCCGAGGTTGTCCTAGGTCAAGAGCATAACATCGATGGCAGAATCGT GGATGTCAAGAGAGCTACTCCTCGCCAGCAGAACGCGGGACCCGCTCCTA GGTACCTAGAGCGCCTCTAGGATAAGGGTATCTAAGAGGGTAGAGTATGC GATGCAGGTACCAGAATGTAGGCTACTTAGGTGCAGGTTGTCAAGTTCAA GATAGTAGAGATGCAAGCTCCCAACACTCAGTTGGGTAACGTGCAGCACT TACTGTTGTGTTCGCTGTTGGTTGTTCCTGCCTGTGTGATTCTCAAGGTC ATAGGACCGTAGGTGTTGTCATTGACATGCATGCTGCTTGTGCGAAGTGT TGTGACACGTGGTGAAGTCAGCTGTTGTAGTTTGGTGCACAACCCGTTGC ATTCTGTAGGCGTCCTGCGCTAACACATCACTCAACCCCTAAATCAGCAA GCACTTGAACGCAGCGCTGTTCTGCTCACAGCAGCAGCAAACACGTAAAT TCAACCCTCGTGTCTTGCAGCAGTGCTCATCCTCGTCAGCATCACTGACC AGTCGCCTGCATGTTGCACAACCCTTGTCAGCGCGCTGCGCATTCCGCAT CCCAGTCCCTCAATCCCCCCCCCCCCATGGCCGCCCCGCACCCCCCTCTG CCAGCACTTCCTCACACTTCAACTGTGACTCCCCCGTCGCAGCAGGAGCG CGCCGCCCGCGCGCGGCAACGGCCCGCCCAGCATGAAGATCTTTGTGGGC GGCCTCGAGCAGAGCGTCGACGACCCGGCGTTCCGCGCGCACTTTGAGCA GTTCGGCGTGATCACCGACTCGGTCATCATGTACGACCGCGTGACCAAGC GCTCGCGCGGCTTCGGCTTCATCACGTTCGAGAACCAGGGGTCCGTGCAG GTGAGAGAGTCGCTTGCGCTTTGCGCGCACGCGCCCATTGAGTGCTGA
back to top

Coding sequence (CDS) from alignment at Contig_113:321081..322828-

>mRNA_13197 ID=mRNA_13197|Name=jgi.p|Trimin1|174372|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=612bp|location=Sequence derived from alignment at Contig_113:321081..322828- (Tribonema minus UTEX_B_3156 )
ATGCAGCAGCAGCCATTGTACGCCAATGGCGATGGAGGGCAGCAGCAGCC
TGCGCAGCAGCCGCAGCCTCTGGGCGGCGGCGACGGCAGCGAGATCGGCA
AGATCTTTGTGGGCGGCATTGCCTGGCAGACCACCGACTCCGCCTTGCGC
TACTACTTCGAGCGCTTTGGGGAGCTGGATGATATCGCCCTGATGAAGGA
CAAGATGACGGGGCAGCCTAGGGGCTTTGGCTTCATCAAGTTCAAGGATC
CCGCAATCGCCGAGGTTGTCCTAGGTCAAGAGCATAACATCGATGGCAGA
ATCGTGGATGTCAAGAGAGCTACTCCTCGCCAGCAGAACGCGGGACCCGC
TCCTAGCAGGAGCGCGCCGCCCGCGCGCGGCAACGGCCCGCCCAGCATGA
AGATCTTTGTGGGCGGCCTCGAGCAGAGCGTCGACGACCCGGCGTTCCGC
GCGCACTTTGAGCAGTTCGGCGTGATCACCGACTCGGTCATCATGTACGA
CCGCGTGACCAAGCGCTCGCGCGGCTTCGGCTTCATCACGTTCGAGAACC
AGGGGTCCGTGCAGGTGAGAGAGTCGCTTGCGCTTTGCGCGCACGCGCCC
ATTGAGTGCTGA
back to top