mRNA_13192 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|174335
Unique NamemRNA_13192
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|174335 vs. uniprot
Match: A0A836CND2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CND2_9STRA)

HSP 1 Score: 174 bits (441), Expect = 3.420e-50
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1 
Query:    1 MPLLPESIGNLIALETLKLQGWQALTHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGLARLRTFICWQTGLATLSASEHCLRGLAALTDLSWGTREPADAVSVPRSIGAFRALTKLSITCSRLV 447
            MPLLPESIGNLIALETLKLQGWQALTHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGLARLRTFICWQTGLATLSASEHCLRGLAALTDLSWGTREPADAVSVPRSIGAFRALTKLSITCSRLV
Sbjct:    1 MPLLPESIGNLIALETLKLQGWQALTHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGLARLRTFICWQTGLATLSASEHCLRGLAALTDLSWGTREPADAVSVPRSIGAFRALTKLSITCSRLV 149
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BLAST of jgi.p|Trimin1|174335 vs. uniprot
Match: A0A835ZG33_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG33_9STRA)

HSP 1 Score: 141 bits (355), Expect = 2.460e-37
Identity = 134/147 (91.16%), Postives = 136/147 (92.52%), Query Frame = 1 
Query:    1 MPLLPESIGNLIALETLKLQGWQALTHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGLARLRTFICWQTGLATLSASEHCLRGLAALTDLSWGTREPADAVSVPRSIGAFRALTKLSITCSR 441
            MPLLPESIGNLIALETLKLQGWQALTHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   ARLRT ICWQTG+ATLS SEHCL GLAALTDLSWGT E ADAV VPRSIGA +ALTKL ITCSR
Sbjct:    1 MPLLPESIGNLIALETLKLQGWQALTHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARLRTSICWQTGIATLSDSEHCLGGLAALTDLSWGTHELADAVRVPRSIGALQALTKLHITCSR 147
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BLAST of jgi.p|Trimin1|174335 vs. uniprot
Match: A0A836CKM6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKM6_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 4.800e-7
Identity = 100/149 (67.11%), Postives = 111/149 (74.50%), Query Frame = 1 
Query:    1 MPLLPESIGNLIALETLKLQGWQALTHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGLARLRTFICWQTGLATLSASEHCLRGLAALTDLSWGTR-EPADAVSVPRSIGAFRALTKLSITCSRL 444
            + LLPESIGNL ALETL L  W+A+   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          C  T +ATLS  E C+ GLA+L+  SWG + E A A+ VPR IG  +ALT LS+  SRL
Sbjct:   28 LSLLPESIGNLAALETLGLSEWKAIARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLRCCNTRVATLS--EQCIGGLASLSKFSWGGKPENAAAIQVPRGIGKLQALTALSLHSSRL 174
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174335 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CND2_9STRA3.420e-50100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZG33_9STRA2.460e-3791.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CKM6_9STRA4.800e-767.11Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_113contigContig_113:287477..288250 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|174335|e_gw1.113.21.1
Hectar predicted targeting categoryother localisation
TranscriptId174657
TrackFilteredModels1
ProteinId174335
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174335gene_13192Tribonema minus UTEX_B_3156 geneContig_113 287477..288250 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13192_1exon_13192_1Tribonema minus UTEX_B_3156 exonContig_113 287477..288250 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13192CDS_13192Tribonema minus UTEX_B_3156 CDSContig_113 287477..288250 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174335Trimin1|174335|e_gw1.113.21.1Tribonema minus UTEX_B_3156 polypeptideContig_113 287477..288250 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13192 ID=mRNA_13192|Name=jgi.p|Trimin1|174335|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=774bp|location=Sequence derived from alignment at Contig_113:287477..288250- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCTGCTGCCAGAGTCAATCGGCAACCTCATTGCGCTAGAGACGCT
CAAGCTGCAGGGGTGGCAAGCCCTCACGCACCTGCCCGACAGCATCGCCG
GGCTGCAGCGGCTCCGCACGCTCGACCTGTCCGACTGCATGGCGCTGGCG
AAGCTGCCGGACCGCATCGGCGACCTCGCATCCCTCACGCACCTCGACGT
GCACTCGTGCGAGCAGCTCGCGAGCGTGCCGGACAGCTTCTACGGCCTCG
CACGGCTTAGGACTTTCATCTGCTGGCAGACCGGGCTAGCAACGCTCAGC
GCATCGGAGCACTGCCTCCGCGGCCTGGCGGCCCTCACAGATCTCAGCTG
GGGGACGCGCGAGCCCGCGGACGCCGTGAGCGTGCCGCGCAGCATCGGCG
CGTTTCGGGCATTGACGAAGCTGAGCATCACGTGCAGCCGCCTGGTAAGT
TTGCCGGACAGCATCGGCGAGCTGCAGGCCTTGGCAGTGCTCAATCTCAG
CTGTGCAGCTCTTGGCTGCCTGCCGGAGAGCGTCGTCAAACTTCAAGCAT
TGACGTCGCTCAACCTCAACTACTGCCATGCGCTGACGCACCTGCCCGAA
TGCATGGGCGAACTTCAAGCGCTGACCAGCCTCGATCTCTACCAATGCAA
CGCTTTGTCTAGCCTGCCTGACTCCATGCTGGAGTTGAAGGCGCTGCAGC
GTGTGCAGCTAGGGTACTGCAGACTGCTGGCCGATGTCCCAGAGAAAATA
CAGAAGCTGTTTGGCGGATACTGA
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protein sequence of jgi.p|Trimin1|174335

>Trimin1|174335|e_gw1.113.21.1 ID=Trimin1|174335|e_gw1.113.21.1|Name=jgi.p|Trimin1|174335|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=258bp
MPLLPESIGNLIALETLKLQGWQALTHLPDSIAGLQRLRTLDLSDCMALA
KLPDRIGDLASLTHLDVHSCEQLASVPDSFYGLARLRTFICWQTGLATLS
ASEHCLRGLAALTDLSWGTREPADAVSVPRSIGAFRALTKLSITCSRLVS
LPDSIGELQALAVLNLSCAALGCLPESVVKLQALTSLNLNYCHALTHLPE
CMGELQALTSLDLYQCNALSSLPDSMLELKALQRVQLGYCRLLADVPEKI
QKLFGGY*
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mRNA from alignment at Contig_113:287477..288250-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13192 ID=mRNA_13192|Name=jgi.p|Trimin1|174335|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=774bp|location=Sequence derived from alignment at Contig_113:287477..288250- (Tribonema minus UTEX_B_3156 )
ATGCCGCTGCTGCCAGAGTCAATCGGCAACCTCATTGCGCTAGAGACGCT
CAAGCTGCAGGGGTGGCAAGCCCTCACGCACCTGCCCGACAGCATCGCCG
GGCTGCAGCGGCTCCGCACGCTCGACCTGTCCGACTGCATGGCGCTGGCG
AAGCTGCCGGACCGCATCGGCGACCTCGCATCCCTCACGCACCTCGACGT
GCACTCGTGCGAGCAGCTCGCGAGCGTGCCGGACAGCTTCTACGGCCTCG
CACGGCTTAGGACTTTCATCTGCTGGCAGACCGGGCTAGCAACGCTCAGC
GCATCGGAGCACTGCCTCCGCGGCCTGGCGGCCCTCACAGATCTCAGCTG
GGGGACGCGCGAGCCCGCGGACGCCGTGAGCGTGCCGCGCAGCATCGGCG
CGTTTCGGGCATTGACGAAGCTGAGCATCACGTGCAGCCGCCTGGTAAGT
TTGCCGGACAGCATCGGCGAGCTGCAGGCCTTGGCAGTGCTCAATCTCAG
CTGTGCAGCTCTTGGCTGCCTGCCGGAGAGCGTCGTCAAACTTCAAGCAT
TGACGTCGCTCAACCTCAACTACTGCCATGCGCTGACGCACCTGCCCGAA
TGCATGGGCGAACTTCAAGCGCTGACCAGCCTCGATCTCTACCAATGCAA
CGCTTTGTCTAGCCTGCCTGACTCCATGCTGGAGTTGAAGGCGCTGCAGC
GTGTGCAGCTAGGGTACTGCAGACTGCTGGCCGATGTCCCAGAGAAAATA
CAGAAGCTGTTTGGCGGATACTGA
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Coding sequence (CDS) from alignment at Contig_113:287477..288250-

>mRNA_13192 ID=mRNA_13192|Name=jgi.p|Trimin1|174335|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=774bp|location=Sequence derived from alignment at Contig_113:287477..288250- (Tribonema minus UTEX_B_3156 )
ATGCCGCTGCTGCCAGAGTCAATCGGCAACCTCATTGCGCTAGAGACGCT
CAAGCTGCAGGGGTGGCAAGCCCTCACGCACCTGCCCGACAGCATCGCCG
GGCTGCAGCGGCTCCGCACGCTCGACCTGTCCGACTGCATGGCGCTGGCG
AAGCTGCCGGACCGCATCGGCGACCTCGCATCCCTCACGCACCTCGACGT
GCACTCGTGCGAGCAGCTCGCGAGCGTGCCGGACAGCTTCTACGGCCTCG
CACGGCTTAGGACTTTCATCTGCTGGCAGACCGGGCTAGCAACGCTCAGC
GCATCGGAGCACTGCCTCCGCGGCCTGGCGGCCCTCACAGATCTCAGCTG
GGGGACGCGCGAGCCCGCGGACGCCGTGAGCGTGCCGCGCAGCATCGGCG
CGTTTCGGGCATTGACGAAGCTGAGCATCACGTGCAGCCGCCTGGTAAGT
TTGCCGGACAGCATCGGCGAGCTGCAGGCCTTGGCAGTGCTCAATCTCAG
CTGTGCAGCTCTTGGCTGCCTGCCGGAGAGCGTCGTCAAACTTCAAGCAT
TGACGTCGCTCAACCTCAACTACTGCCATGCGCTGACGCACCTGCCCGAA
TGCATGGGCGAACTTCAAGCGCTGACCAGCCTCGATCTCTACCAATGCAA
CGCTTTGTCTAGCCTGCCTGACTCCATGCTGGAGTTGAAGGCGCTGCAGC
GTGTGCAGCTAGGGTACTGCAGACTGCTGGCCGATGTCCCAGAGAAAATA
CAGAAGCTGTTTGGCGGATACTGA
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