mRNA_13182 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352243
Unique NamemRNA_13182
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|352243 vs. uniprot
Match: A0A835ZEK1_9STRA (A to I editase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEK1_9STRA)

HSP 1 Score: 951 bits (2459), Expect = 0.000e+0
Identity = 656/656 (100.00%), Postives = 656/656 (100.00%), Query Frame = 1
Query:    1 MALGDEVAAAQTSSADAPLAVIALATGTKCMGQSKLPPDGSIVHDSHAEVLARRCLVRLLGEHLRAALTRAGGSDDSRNFLESTGVEGRFRLRRGHRLHLYISEPPCGDASIYPRVADSPPAAVEAAARADTATAEAALDATQLPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMVPAPAAASHSVNSPTCPLKRANNSGAGDAPHAKKPKLNGDSTEGSGLPSDGATMAVTAENGDVVAGGQGGSGAHAAGAVAMAYTGAKALTLEREVRQAVGQLRLKSGRSDLRPEDRTESMSCSDKLARWAVLGLQGRLLRRWLEPVLLSSVTVSADARAAPDAQRAAMRRAICDRAAAXXXXXXXXXXXXXXXPGSDIADGTXAXXXXXXXXXXXQALELYIVEAQYNRGKLLAQQQQAAALASGADAAAARPIPCGFCLNWWLPFGAAAAAPLPQRSTGAPGEAEVTLGALGRRQGRRINAASRSRLCKVCIFEGLCGSSGDGKAVGKPGSSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMIAAALAGLTYAAAKATACESANAQRQALLESAPFRGWLVTDPVQEAFVIEAASAPSVPXXXXXXXXXXXXXXXXXXPESAQSDSGTVVLPTSSVH 1968
            MALGDEVAAAQTSSADAPLAVIALATGTKCMGQSKLPPDGSIVHDSHAEVLARRCLVRLLGEHLRAALTRAGGSDDSRNFLESTGVEGRFRLRRGHRLHLYISEPPCGDASIYPRVADSPPAAVEAAARADTATAEAALDATQLPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMVPAPAAASHSVNSPTCPLKRANNSGAGDAPHAKKPKLNGDSTEGSGLPSDGATMAVTAENGDVVAGGQGGSGAHAAGAVAMAYTGAKALTLEREVRQAVGQLRLKSGRSDLRPEDRTESMSCSDKLARWAVLGLQGRLLRRWLEPVLLSSVTVSADARAAPDAQRAAMRRAICDRAAAXXXXXXXXXXXXXXXPGSDIADGTXAXXXXXXXXXXXQALELYIVEAQYNRGKLLAQQQQAAALASGADAAAARPIPCGFCLNWWLPFGAAAAAPLPQRSTGAPGEAEVTLGALGRRQGRRINAASRSRLCKVCIFEGLCGSSGDGKAVGKPGSSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMIAAALAGLTYAAAKATACESANAQRQALLESAPFRGWLVTDPVQEAFVIEAASAPSVPXXXXXXXXXXXXXXXXXXPESAQSDSGTVVLPTSSVH
Sbjct:    1 MALGDEVAAAQTSSADAPLAVIALATGTKCMGQSKLPPDGSIVHDSHAEVLARRCLVRLLGEHLRAALTRAGGSDDSRNFLESTGVEGRFRLRRGHRLHLYISEPPCGDASIYPRVADSPPAAVEAAARADTATAEAALDATQLPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMVPAPAAASHSVNSPTCPLKRANNSGAGDAPHAKKPKLNGDSTEGSGLPSDGATMAVTAENGDVVAGGQGGSGAHAAGAVAMAYTGAKALTLEREVRQAVGQLRLKSGRSDLRPEDRTESMSCSDKLARWAVLGLQGRLLRRWLEPVLLSSVTVSADARAAPDAQRAAMRRAICDRAAAXXXXXXXXXXXXXXXPGSDIADGTXAXXXXXXXXXXXQALELYIVEAQYNRGKLLAQQQQAAALASGADAAAARPIPCGFCLNWWLPFGAAAAAPLPQRSTGAPGEAEVTLGALGRRQGRRINAASRSRLCKVCIFEGLCGSSGDGKAVGKPGSSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMIAAALAGLTYAAAKATACESANAQRQALLESAPFRGWLVTDPVQEAFVIEAASAPSVPXXXXXXXXXXXXXXXXXXPESAQSDSGTVVLPTSSVH 656          
BLAST of jgi.p|Trimin1|352243 vs. uniprot
Match: A0A5D6Y1B1_9STRA (A to I editase domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y1B1_9STRA)

HSP 1 Score: 114 bits (284), Expect = 6.640e-23
Identity = 115/356 (32.30%), Postives = 157/356 (44.10%), Query Frame = 1
Query:   34 TSSADAPLAVIALATGTKCMGQSKLPPDGSIVHDSHAEVLARRCLVRLLGEHLRAALTRAGGSDDSRNFLESTGVEGRFRLRRGHRLHLYISEPPCGDASIYPRVADSPPAAVEAAARADTATAEAALDATQLPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMVPAPAAASHSVNSPTCPLKRANNSGAGDAPHAKKPKLNGDSTEGSGLPSDGATMAVTAENGDVVAGGQGGSGAHAAGAVAMAYTGAKALTLEREVRQAVGQLRLKSGRSDLRPEDRTESMSCSDKLARWAVLGLQGRLLRRWLEPVLLSSVTVSAD-ARAAPDAQRAAMRRAICDRAA 1098
            +S+A+AP  V++  TGTKC+G+  L P G ++HD HAE LARR L+R L  +  A    AG  D + +        GR  L+  H LH  ++E PCGDA++Y    D   A V+  A +++A   +AL  T   A                                                             KR + S AG     ++ + N D  +      D +T    AE  D     Q                GA     E    QAVG  R+KSGRSDL P+ +T SMSCSDKLARWA LG+QG LL ++ +P+ L+SV V  D A  +  AQ+AA+ RA+  R A
Sbjct:   43 SSAAEAPR-VLSAGTGTKCLGRRDLHPRGLVLHDCHAETLARRALLRYL--YAEALAWAAGCEDRAASLFTRNNTSGRLVLKPQHALHFVVTEAPCGDAALYELREDVVDALVQQRASSESAE-RSALRLTGAKAKR-----------------------------------------------------------KREDESDAG-----RRHQRNADGGDVDAC--DNSTGHRNAELADQWCEQQ------------RLPDGAVEPRKETRFEQAVGVARVKSGRSDLLPDKQTLSMSCSDKLARWAALGVQGSLLLQFYDPLFLASVVVLRDDASVSAAAQQAALERAVVGRLA 316          
BLAST of jgi.p|Trimin1|352243 vs. uniprot
Match: K3WR94_GLOUD (A to I editase domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WR94_GLOUD)

HSP 1 Score: 109 bits (273), Expect = 1.050e-21
Identity = 112/366 (30.60%), Postives = 147/366 (40.16%), Query Frame = 1
Query:   10 GDEVAAAQTSSADAPLAVIALATGTKCMGQSKLPPDGSIVHDSHAEVLARRCLVRLLGEH--LRAALTRAGGSDDSRNFLESTGVEGRFRLRRGHRLHLYISEPPCGDASIYPRVADSPPAAVEAAAR--ADTATAEAALDATQLPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMVPAPAAASHSVNSPTCPLKRANNSGAGDAPHAKKPKLNGDSTEGSGLPSDGATMAVTAENGDVVAGGQGGSGAHAAGAVAMAYTGAKALTLEREVRQAVGQLRLKSGRSDLRPEDRTESMSCSDKLARWAVLGLQGRLLRRWLEPVLLSSVTVSADARAAPDA-QRAAMRRAICDR 1092
            G++ +AA   SA     ++A ATGTKC+G+  L   G +V+D HAE+LARR L+R L     +  A    G    S +  E      R  L+  H LHLYISE PCGDA+IY    D     V+      ADT    +  +A                                                    AAA  +V   T        +GA      K  + + D T  S  P++ A                                       E+   Q VG  R+KSGRSDL P+ +T SMSCSDKLA+W  +G+QG LL +W EP+ L S+ VS D      A Q  A+ RAIC R
Sbjct:   45 GEDPSAAGAESA---FRMLACATGTKCLGRRDLDTRGLVVNDCHAEILARRALLRFLYTEALVWTAAREKGDEPPSTSLFERHPTTHRLVLKPQHTLHLYISEAPCGDAAIYQLRGDIIDELVKQRVERNADTGERPSTTEA----------------------------------------------------AAAIGAVAEDTHERSAFRLTGA------KAKRKHSDETTASSSPNENAQRPP-----------------------------------EKRFDQMVGIARVKSGRSDLPPDKQTLSMSCSDKLAKWNAVGIQGTLLLQWYEPLFLRSIVVSRDDTCVSTAAQYEALERAICGR 314          
BLAST of jgi.p|Trimin1|352243 vs. uniprot
Match: D8LI40_ECTSI (A to I editase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI40_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 3.120e-21
Identity = 121/408 (29.66%), Postives = 160/408 (39.22%), Query Frame = 1
Query:   55 LAVIALATGTKCMGQSKLPPDGSIVHDSHAEVLARRCLVRLLGEHLRAALTRAGG----------------------------------------------------SDDSRNFL-------ESTGVEGRFRLRRGHRLHLYISEPPCGDASIYPRVADSPPAAVEAAARADTATAEAALDATQLPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMVPAPAAASHSVNSPTCPLKRANNSGAGDAPHAKKPKLNGDSTEGSGLPSDGATMAVTAENGDVVAGGQGGSGAHAAGAVAMAYTGAKALTLEREVRQAVGQLRLKSGRSDLRPEDRTESMSCSDKLARWAVLGLQGRLLRRWLEPVLLSSVTVSADARA-APDAQRAAMRRAICDRAA 1098
            L VI+LATG KC+G+ K+P DGS+VHDSHAEVLARR L+  L   L   ++ A G                                                     DD R  L          G    +RL+   RLHLYIS+ PCGDASIY +   +P      +AR      +   D++   AP                                             P A S S        +   ++  GDA  A+        ++    PS    + +  E               +  A ++     K    E    Q VG LR+KS RS++  E RT SMSCSDKLA+WA LG+QG LL  W+EP+ LSS+ +SAD R   P    +A+ RAI  RAA
Sbjct:   59 LRVISLATGNKCVGRDKIPDDGSVVHDSHAEVLARRALLLRLWRELHLRVSSAAGRQQDVTIDERKGGGTPCNSGRSDGRSTPSSSTTAATVDAHPQPPLYGGVLPGEDDGRILLLERSPQATDAGACISWRLKPYIRLHLYISDAPCGDASIYEQKRQAPNVGGGGSARCGGGDGDPGNDSSWDDAPRS------------------------------------------TPLAGSRSDGE----RRGRGDADRGDAKRARCAVAIAGLSDAV-APSPRPDLPLDEER--------------SCSAASLNPLDCKPREPEE---QQVGALRIKSSRSNISEEGRTMSMSCSDKLAKWAFLGVQGGLLASWVEPIFLSSIVISADPRTDGPAPLASALTRAIPGRAA 402          
BLAST of jgi.p|Trimin1|352243 vs. uniprot
Match: A0A6A3P3D5_9STRA (A to I editase domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3P3D5_9STRA)

HSP 1 Score: 104 bits (259), Expect = 5.330e-20
Identity = 106/349 (30.37%), Postives = 134/349 (38.40%), Query Frame = 1
Query:   61 VIALATGTKCMGQSKLPPDGSIVHDSHAEVLARRCLVRLL-GEHLRAALTRAGGSDDSRNFLESTGVEGRFRLRRGHRLHLYISEPPCGDASIYPRVADSPPAAV---EAAARADTATAEAALDATQLPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMVPAPAAASHSVNSPTCPLKRANNSGAGDAPHAKKPKLNGDSTEGSGLPSDGATMAVTAENGDVVAGGQGGSGAHAAGAVAMAYTGAKALTLEREVRQAVGQLRLKSGRSDLRPEDRTESMSCSDKLARWAVLGLQGRLLRRWLEPVLLSSVTVSADARAAPDA-QRAAMRRAICDR 1092
            V+A+ATGTKC+G+  L  DG +V+D HAEVLARR L+R L  E L   +     SD S    E      R  L+  H LHL+ISE PCGDA+IY    D     V   E     D   +E  L                                                                            G   H  K +  GD  +    P                                           ++   QAVG  R+KSGRSDL  + +T SMSCSDKLA+W  LGLQG LL ++ EPV LSS+ VS D +A   A Q+ A++RA+C R
Sbjct:   60 VLAVATGTKCLGRRDLNVDGLVVNDCHAEVLARRALLRYLYAEALHWQVNGPESSDQS--IFERHPTSSRLVLKPQHSLHLFISEAPCGDAAIYELRQDVVDELVHQREGREANDGERSELRL---------------------------------------------------------------------------TGAKAHVNKRRRGGDPDDHDTPP-------------------------------------------DKRFAQAVGITRVKSGRSDLPADKQTLSMSCSDKLAKWNALGLQGSLLLQFYEPVFLSSIVVSEDEQALSVAKQQQALQRAVCGR 288          
BLAST of jgi.p|Trimin1|352243 vs. uniprot
Match: A0A3M6VCX4_9STRA (A to I editase domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VCX4_9STRA)

HSP 1 Score: 104 bits (259), Expect = 5.840e-20
Identity = 103/352 (29.26%), Postives = 133/352 (37.78%), Query Frame = 1
Query:   61 VIALATGTKCMGQSKLPPDGSIVHDSHAEVLARRCLVRLLGEHLRAALTRAGGSDDS-RNFLESTGVEGRFRLRRGHRLHLYISEPPCGDASIYPRVADSPPAAVEAAARADTATAEAALDATQLPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMVPAPAAASHSVNSPTCPLKRANNSGAGDAPHAKKPKLNGDSTEGSGLPSDGATMAVTAENGDVVAGGQGGSGAHAAGAVAMAYTGAK------ALTLEREVRQAVGQLRLKSGRSDLRPEDRTESMSCSDKLARWAVLGLQGRLLRRWLEPVLLSSVTVSADARAAPDA-QRAAMRRAICDR 1092
            V+  ATG KC+G+  L  DG +V+D HAEVLARR L+R L  ++ A L +   S+ + ++  E      R  L+  H LHL+ISE PCGDA+IY                                                                           +V    A  +S +  T                                           EN             H      +  TGAK       L  +    Q VG  R+KSGRSDL  + +T SMSCSDKLA+W  LGLQG LL +W EP+ LSSV VS D +A   A Q  A+RRA+C R
Sbjct:   61 VLTAATGNKCLGRRDLNADGFVVNDCHAEVLARRALLRYL--YIEALLWKENKSESNEQSIFEYHSTSRRLVLKPQHSLHLFISEAPCGDAAIY------------------------------------------------------------------ELRQEVVNQLVQQRRAGCNSTDDET-------------------------------------------EN-------------HVPSRSELRVTGAKRPRHRDTLLPDNRFTQTVGVARVKSGRSDLPLDKQTLSMSCSDKLAKWNALGLQGSLLLQWFEPIFLSSVCVSGDDKAMSVAKQERALRRAVCTR 288          
BLAST of jgi.p|Trimin1|352243 vs. uniprot
Match: A0A833X2Q8_PHYIN (Adenosine-deaminase (Editase) domain n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833X2Q8_PHYIN)

HSP 1 Score: 103 bits (256), Expect = 9.410e-20
Identity = 102/348 (29.31%), Postives = 138/348 (39.66%), Query Frame = 1
Query:   55 LAVIALATGTKCMGQSKLPPDGSIVHDSHAEVLARRCLVRLLGEHLRAALTRAGGSDDSRNFL-ESTGVEGRFRLRRGHRLHLYISEPPCGDASIYPRVADSPPAAVEAAARADTATAEAALDATQLPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMVPAPAAASHSVNSPTCPLKRANNSGAGDAPHAKKPKLNGDSTEGSGLPSDGATMAVTAENGDVVAGGQGGSGAHAAGAVAMAYTGAKALTLEREVRQAVGQLRLKSGRSDLRPEDRTESMSCSDKLARWAVLGLQGRLLRRWLEPVLLSSVTVSADARA-APDAQRAAMRRAICDR 1092
            L V+A+ATG KC+G+  L  DG +V+D HAEVLARR L+R L  +  A   +  G + S + + E      R  L+  H LHL+ISE PCGDA+IY    D     V           +    A +L                                                                       G   H+K+P+ + D+ +                                             L  +++  QAVG  R+KSGRSDL  E +T SMSCSDKLA+W  LGLQG LL +W EP+ LSS+ VS D  A +   Q  A++RA+C R
Sbjct:   52 LRVLAVATGNKCLGRRDLNADGLVVNDCHAEVLARRALLRYL--YAEALSWQENGLELSEHSIFERHSTSRRLVLKPQHSLHLFISEAPCGDAAIYELRHDVVDELVHQREAKTGQAGQRERSALRL----------------------------------------------------------------------TGAKAHSKRPR-DQDTDD---------------------------------------------LQPDKKFAQAVGIARVKSGRSDLPLEKQTLSMSCSDKLAKWNALGLQGSLLLQWFEPIFLSSIIVSKDEEALSVTKQEYALQRALCTR 281          
BLAST of jgi.p|Trimin1|352243 vs. uniprot
Match: A0A6J1DTU3_MOMCH (tRNA-specific adenosine deaminase 1 isoform X4 n=1 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1DTU3_MOMCH)

HSP 1 Score: 101 bits (252), Expect = 1.440e-19
Identity = 58/130 (44.62%), Postives = 78/130 (60.00%), Query Frame = 1
Query:   55 LAVIALATGTKCMGQSKLPPDGSIVHDSHAEVLARRCLVRLL-------------GEHLRAALTRAGGSDDSRNFL----ESTGVEGRFRLRRGHRLHLYISEPPCGDAS------IYPRVADSPPAAVE 375
            L V+AL TGTKC+G+S+L P+G IV+DSHAE++ARR L+R                EH R   +R   SDD +N L    E  G  G++ +R+G +LHLYIS+ PCGDAS      + PR  D+PP  +E
Sbjct:   54 LQVVALGTGTKCLGRSQLSPNGDIVNDSHAEIIARRALMRFFYAQIQHLSQNNCDSEHHRMKRSR---SDDVKNILFELDEEAGAGGKYVMRKGWKLHLYISQLPCGDASSSTPRNVQPRTEDAPPCLIE 180          
BLAST of jgi.p|Trimin1|352243 vs. uniprot
Match: A0A6J1DPP1_MOMCH (tRNA-specific adenosine deaminase 1 isoform X1 n=3 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1DPP1_MOMCH)

HSP 1 Score: 101 bits (252), Expect = 2.360e-19
Identity = 58/130 (44.62%), Postives = 78/130 (60.00%), Query Frame = 1
Query:   55 LAVIALATGTKCMGQSKLPPDGSIVHDSHAEVLARRCLVRLL-------------GEHLRAALTRAGGSDDSRNFL----ESTGVEGRFRLRRGHRLHLYISEPPCGDAS------IYPRVADSPPAAVE 375
            L V+AL TGTKC+G+S+L P+G IV+DSHAE++ARR L+R                EH R   +R   SDD +N L    E  G  G++ +R+G +LHLYIS+ PCGDAS      + PR  D+PP  +E
Sbjct:   54 LQVVALGTGTKCLGRSQLSPNGDIVNDSHAEIIARRALMRFFYAQIQHLSQNNCDSEHHRMKRSR---SDDVKNILFELDEEAGAGGKYVMRKGWKLHLYISQLPCGDASSSTPRNVQPRTEDAPPCLIE 180          
BLAST of jgi.p|Trimin1|352243 vs. uniprot
Match: F2ECL2_HORVV (Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=F2ECL2_HORVV)

HSP 1 Score: 94.7 bits (234), Expect = 7.880e-18
Identity = 50/110 (45.45%), Postives = 75/110 (68.18%), Query Frame = 1
Query:   19 VAAAQTSSADAPL--AVIALATGTKCMGQSKLPPDGSIVHDSHAEVLARRCLVRLLGEHLRAALTRAGGSDDSRNFLESTGVEGRFRLRRGHRLHLYISEPPCGDASIYP 342
            +AA   SS + PL   V++LATGTKC+G ++L P G +VHD+HAEV+ARR L+RL+   +        G+D+  ++L ++G +GR+RL  GH+LHLYI++ PCG   + P
Sbjct:   44 LAAFLLSSPENPLNPTVLSLATGTKCLGAARLGPRGDLVHDAHAEVIARRALLRLIYAEI--------GTDNPPSWLVASGTDGRWRLNDGHQLHLYITQIPCGVMPVPP 145          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352243 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZEK1_9STRA0.000e+0100.00A to I editase domain-containing protein n=1 Tax=T... [more]
A0A5D6Y1B1_9STRA6.640e-2332.30A to I editase domain-containing protein n=1 Tax=P... [more]
K3WR94_GLOUD1.050e-2130.60A to I editase domain-containing protein n=1 Tax=G... [more]
D8LI40_ECTSI3.120e-2129.66A to I editase domain-containing protein n=2 Tax=E... [more]
A0A6A3P3D5_9STRA5.330e-2030.37A to I editase domain-containing protein n=4 Tax=P... [more]
A0A3M6VCX4_9STRA5.840e-2029.26A to I editase domain-containing protein n=1 Tax=P... [more]
A0A833X2Q8_PHYIN9.410e-2029.31Adenosine-deaminase (Editase) domain n=1 Tax=Phyto... [more]
A0A6J1DTU3_MOMCH1.440e-1944.62tRNA-specific adenosine deaminase 1 isoform X4 n=1... [more]
A0A6J1DPP1_MOMCH2.360e-1944.62tRNA-specific adenosine deaminase 1 isoform X1 n=3... [more]
F2ECL2_HORVV7.880e-1845.45Predicted protein n=1 Tax=Hordeum vulgare subsp. v... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_113contigContig_113:205298..208110 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352243|estExt_Genemark1.C_Ctg_1130025
BRITEko00000,ko00001,ko01000,ko03016,ko03041
KEGG rclassRC00477
KEGG ReactionR10231
KEGG Pathwayko04623,ko05162,ko05164,map04623,map05162,map05164
KEGG koko:K12968,ko:K15440
EC3.5.4.34,3.5.4.37
Descriptionadenosine deaminase activity
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG2777@1|root,KOG2777@2759|Eukaryota
Evalue5.11e-22
Seed ortholog2880.D8LI40
Hectar predicted targeting categoryother localisation
TranscriptId352565
TrackFilteredModels1
ProteinId352243
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352243gene_13182Tribonema minus UTEX_B_3156 geneContig_113 205298..208110 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352243Trimin1|352243|estExt_Genemark1.C_Ctg_1130025Tribonema minus UTEX_B_3156 polypeptideContig_113 205298..208110 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13182_3exon_13182_3Tribonema minus UTEX_B_3156 exonContig_113 205298..206345 -
exon_13182_2exon_13182_2Tribonema minus UTEX_B_3156 exonContig_113 206859..207751 -
exon_13182_1exon_13182_1Tribonema minus UTEX_B_3156 exonContig_113 208081..208110 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13182CDS_13182Tribonema minus UTEX_B_3156 CDSContig_113 208081..208110 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13182 ID=mRNA_13182|Name=jgi.p|Trimin1|352243|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1971bp|location=Sequence derived from alignment at Contig_113:205298..208110- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACTCGGCGATGAAGTGGCGGCAGCGCAAACCTCCAGCGCCGACGC
CCCGCTGGCCGTGATAGCTCTGGCGACAGGCACCAAGTGCATGGGCCAGA
GCAAGCTGCCGCCGGACGGCTCCATCGTGCACGACTCTCACGCCGAGGTG
CTGGCGCGGCGGTGCCTGGTGAGGCTGCTGGGAGAGCACCTGCGCGCAGC
TCTCACACGCGCCGGTGGCAGCGACGACTCCAGGAACTTTCTGGAAAGCA
CCGGCGTGGAGGGGCGCTTCAGGCTGAGGCGCGGCCACAGGCTGCACCTG
TACATCAGCGAGCCGCCATGCGGCGATGCGTCCATCTACCCGCGCGTTGC
AGATTCGCCGCCTGCAGCGGTGGAAGCGGCAGCGCGTGCCGACACGGCAA
CTGCAGAAGCAGCACTGGATGCAACTCAATTGCCAGCACCAGCGCCACTG
CTGGCGGCGGCAGGAGCGCCTGCTGCCGCTGCAGGAGCAGCACACACTGG
TACTGCGCTGCCGGCGGCGGCCTCAGTGCCAGCGGCAAGAGCAGTGTCTG
TAGCAGCAGCCACCATGGTTCCCGCCCCCGCAGCCGCCTCGCATAGTGTC
AACAGCCCTACATGTCCGCTGAAGCGCGCCAACAACAGCGGCGCAGGTGA
TGCACCGCACGCTAAGAAACCAAAGTTGAACGGGGACAGCACCGAGGGCT
CAGGGCTGCCAAGCGATGGCGCCACAATGGCTGTAACTGCAGAGAACGGC
GATGTGGTGGCTGGCGGCCAGGGTGGCAGTGGTGCGCACGCAGCGGGTGC
AGTGGCGATGGCGTACACGGGAGCCAAGGCGCTGACGCTGGAGCGGGAAG
TGCGGCAGGCGGTGGGGCAGTTGCGGTTGAAGTCGGGCCGCAGCGACCTG
CGGCCGGAAGACCGCACTGAGAGCATGTCCTGCAGTGACAAGCTGGCGCG
CTGGGCGGTGCTCGGGCTGCAGGGGCGCCTGCTGCGACGCTGGCTGGAAC
CCGTGCTGCTGAGCTCTGTCACCGTCAGCGCCGATGCGCGCGCCGCGCCC
GACGCGCAGCGCGCTGCCATGCGCCGCGCCATCTGCGACCGCGCCGCCGC
CGCTGTCGCTGCTGCCACCGCTGTCGCTGCCAGCACGCCGGCGATCCCTG
GTTCAGACATCGCTGATGGCACTGACGCAGCTGCCGCTGCTGCTGCCGCC
GCTGCTGCTGCGCAAGCCCTGGAGCTGTACATAGTCGAAGCACAGTACAA
CCGCGGCAAGCTGCTGGCGCAGCAGCAGCAGGCGGCTGCGCTCGCATCCG
GCGCTGATGCCGCAGCGGCGCGCCCGATACCCTGCGGCTTCTGCCTCAAC
TGGTGGCTGCCGTTCGGCGCCGCCGCCGCTGCGCCGCTGCCGCAGCGCAG
CACCGGCGCCCCCGGCGAGGCGGAAGTTACGCTCGGAGCGCTGGGGCGGC
GGCAGGGACGGCGCATCAACGCGGCATCGCGCTCGCGCCTCTGCAAGGTG
TGCATATTTGAGGGCCTCTGCGGCAGCAGTGGTGACGGCAAGGCGGTCGG
CAAGCCAGGCAGCAGCGGCGGCGCCGGCAGCAGCCGTGGCGGCGGCGGCA
GCAGCGGCGACAGCCGCAGCAACGGCGGAGCACGCGCCAATGGCGGCGGC
GGCAGCAGTGAGGGGACCGCTGCGGCTGACATGATAGCTGCGGCGCTTGC
AGGGCTGACGTATGCTGCAGCGAAAGCGACGGCATGCGAAAGCGCAAACG
CTCAGCGCCAGGCGCTCCTGGAATCCGCGCCTTTCCGAGGCTGGCTCGTG
ACAGACCCTGTGCAAGAGGCATTTGTCATAGAGGCTGCTTCTGCGCCGTC
AGTGCCTGCGGTTGCTGCAGCAGTAGCAGCAGCGGGCGCCGCCGCTGCAG
GCGCCGCTGCGCCTGAGAGCGCGCAATCCGACTCTGGCACTGTAGTGTTG
CCGACATCATCCGTGCACTGA
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protein sequence of jgi.p|Trimin1|352243

>Trimin1|352243|estExt_Genemark1.C_Ctg_1130025 ID=Trimin1|352243|estExt_Genemark1.C_Ctg_1130025|Name=jgi.p|Trimin1|352243|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=657bp
MALGDEVAAAQTSSADAPLAVIALATGTKCMGQSKLPPDGSIVHDSHAEV
LARRCLVRLLGEHLRAALTRAGGSDDSRNFLESTGVEGRFRLRRGHRLHL
YISEPPCGDASIYPRVADSPPAAVEAAARADTATAEAALDATQLPAPAPL
LAAAGAPAAAAGAAHTGTALPAAASVPAARAVSVAAATMVPAPAAASHSV
NSPTCPLKRANNSGAGDAPHAKKPKLNGDSTEGSGLPSDGATMAVTAENG
DVVAGGQGGSGAHAAGAVAMAYTGAKALTLEREVRQAVGQLRLKSGRSDL
RPEDRTESMSCSDKLARWAVLGLQGRLLRRWLEPVLLSSVTVSADARAAP
DAQRAAMRRAICDRAAAAVAAATAVAASTPAIPGSDIADGTDAAAAAAAA
AAAAQALELYIVEAQYNRGKLLAQQQQAAALASGADAAAARPIPCGFCLN
WWLPFGAAAAAPLPQRSTGAPGEAEVTLGALGRRQGRRINAASRSRLCKV
CIFEGLCGSSGDGKAVGKPGSSGGAGSSRGGGGSSGDSRSNGGARANGGG
GSSEGTAAADMIAAALAGLTYAAAKATACESANAQRQALLESAPFRGWLV
TDPVQEAFVIEAASAPSVPAVAAAVAAAGAAAAGAAAPESAQSDSGTVVL
PTSSVH*
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mRNA from alignment at Contig_113:205298..208110-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13182 ID=mRNA_13182|Name=jgi.p|Trimin1|352243|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2813bp|location=Sequence derived from alignment at Contig_113:205298..208110- (Tribonema minus UTEX_B_3156 )
ATGGCACTCGGCGATGAAGTGGCGGCAGCGGTGCTTCAGCGTTACTCTCA GCTGCCAAAGACTGGCAAGCCTCAGGGTCGGGAGTATACAGTGCTGGCTG GCCTCGTGCTTGAGGTAACTGTGGAGCTGCAATGAGGAACACGAGGAACA CATTTGTCTGCGTGTGTTGCTCTCACCACAAATGCAGTCAGGAACCCAAC TTCAGCCTCCAAGAGTCGCCTGTGCTCCTTTACATTGAGACAAATGCTCA ATACTGCACAGGCTTGCCCGCACCCGTCAACACACACACACATATCACCA TCCCTGCCCAAGAACAGCGCCACTGCCTCATCGACTGCCACACATCTCTG CCTGCGCAGCAAACCTCCAGCGCCGACGCCCCGCTGGCCGTGATAGCTCT GGCGACAGGCACCAAGTGCATGGGCCAGAGCAAGCTGCCGCCGGACGGCT CCATCGTGCACGACTCTCACGCCGAGGTGCTGGCGCGGCGGTGCCTGGTG AGGCTGCTGGGAGAGCACCTGCGCGCAGCTCTCACACGCGCCGGTGGCAG CGACGACTCCAGGAACTTTCTGGAAAGCACCGGCGTGGAGGGGCGCTTCA GGCTGAGGCGCGGCCACAGGCTGCACCTGTACATCAGCGAGCCGCCATGC GGCGATGCGTCCATCTACCCGCGCGTTGCAGATTCGCCGCCTGCAGCGGT GGAAGCGGCAGCGCGTGCCGACACGGCAACTGCAGAAGCAGCACTGGATG CAACTCAATTGCCAGCACCAGCGCCACTGCTGGCGGCGGCAGGAGCGCCT GCTGCCGCTGCAGGAGCAGCACACACTGGTACTGCGCTGCCGGCGGCGGC CTCAGTGCCAGCGGCAAGAGCAGTGTCTGTAGCAGCAGCCACCATGGTTC CCGCCCCCGCAGCCGCCTCGCATAGTGTCAACAGCCCTACATGTCCGCTG AAGCGCGCCAACAACAGCGGCGCAGGTGATGCACCGCACGCTAAGAAACC AAAGTTGAACGGGGACAGCACCGAGGGCTCAGGGCTGCCAAGCGATGGCG CCACAATGGCTGTAACTGCAGAGAACGGCGATGTGGTGGCTGGCGGCCAG GGTGGCAGTGGTGCGCACGCAGCGGGTGCAGTGGCGATGGCGTACACGGG AGCCAAGGCGCTGACGCTGGAGCGGGAAGTGCGGCAGGCGGTGGGGCAGT TGCGGTTGAAGTCGGGCCGCAGCGACCTGCGGCCGGAAGACCGCACTGAG AGGTGAGGATGTGCCGTGTTGGAGAAATTGCTTGTGGCGTCATCAGCAGC CAACCACCGAGTGCCTTGGGTACGCTGGTGCGTGGCACGCTCGAGCGCCA GGCTGTGTGATGTGGAGGGAACATGCAGCTCGATCTGCAGCAATGGTGGC GTTCTAGTGGCCATGCCGCCCGCCTTGCGCCTGTCGGCAGTGCCATGCCA GTCAATGTCCTGGACATATGATGTGGTGGTCTACCCATTGCTGAGCATCT TGATGAGCATCTTGCATGAGGGTGTGCACGCTGAAATGCACGTCACACAG CGATCAAAGTCCTCGTCTTCACCATCTGGCAGTGGCCAGTGCGCGGTTCC CCGGCGCTATGCCGCAGTCGCTGCAGCTGCCGCTTTGTCCATGTTCAACA TTGACGCCATTATACGGCTGCCACGTAGCACCGCCGCCCCACGCTGCGCC TGTCAGTCACCCAACACCCTCCTAACCACAGCCCTCCCATTACTTTGTGC ACGCGCGCCGTGCAGCATGTCCTGCAGTGACAAGCTGGCGCGCTGGGCGG TGCTCGGGCTGCAGGGGCGCCTGCTGCGACGCTGGCTGGAACCCGTGCTG CTGAGCTCTGTCACCGTCAGCGCCGATGCGCGCGCCGCGCCCGACGCGCA GCGCGCTGCCATGCGCCGCGCCATCTGCGACCGCGCCGCCGCCGCTGTCG CTGCTGCCACCGCTGTCGCTGCCAGCACGCCGGCGATCCCTGGTTCAGAC ATCGCTGATGGCACTGACGCAGCTGCCGCTGCTGCTGCCGCCGCTGCTGC TGCGCAAGCCCTGGAGCTGTACATAGTCGAAGCACAGTACAACCGCGGCA AGCTGCTGGCGCAGCAGCAGCAGGCGGCTGCGCTCGCATCCGGCGCTGAT GCCGCAGCGGCGCGCCCGATACCCTGCGGCTTCTGCCTCAACTGGTGGCT GCCGTTCGGCGCCGCCGCCGCTGCGCCGCTGCCGCAGCGCAGCACCGGCG CCCCCGGCGAGGCGGAAGTTACGCTCGGAGCGCTGGGGCGGCGGCAGGGA CGGCGCATCAACGCGGCATCGCGCTCGCGCCTCTGCAAGGTGTGCATATT TGAGGGCCTCTGCGGCAGCAGTGGTGACGGCAAGGCGGTCGGCAAGCCAG GCAGCAGCGGCGGCGCCGGCAGCAGCCGTGGCGGCGGCGGCAGCAGCGGC GACAGCCGCAGCAACGGCGGAGCACGCGCCAATGGCGGCGGCGGCAGCAG TGAGGGGACCGCTGCGGCTGACATGATAGCTGCGGCGCTTGCAGGGCTGA CGTATGCTGCAGCGAAAGCGACGGCATGCGAAAGCGCAAACGCTCAGCGC CAGGCGCTCCTGGAATCCGCGCCTTTCCGAGGCTGGCTCGTGACAGACCC TGTGCAAGAGGCATTTGTCATAGAGGCTGCTTCTGCGCCGTCAGTGCCTG CGGTTGCTGCAGCAGTAGCAGCAGCGGGCGCCGCCGCTGCAGGCGCCGCT GCGCCTGAGAGCGCGCAATCCGACTCTGGCACTGTAGTGTTGCCGACATC ATCCGTGCACTGA
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Coding sequence (CDS) from alignment at Contig_113:205298..208110-

>mRNA_13182 ID=mRNA_13182|Name=jgi.p|Trimin1|352243|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1971bp|location=Sequence derived from alignment at Contig_113:205298..208110- (Tribonema minus UTEX_B_3156 )
ATGGCACTCGGCGATGAAGTGGCGGCAGCGCAAACCTCCAGCGCCGACGC
CCCGCTGGCCGTGATAGCTCTGGCGACAGGCACCAAGTGCATGGGCCAGA
GCAAGCTGCCGCCGGACGGCTCCATCGTGCACGACTCTCACGCCGAGGTG
CTGGCGCGGCGGTGCCTGGTGAGGCTGCTGGGAGAGCACCTGCGCGCAGC
TCTCACACGCGCCGGTGGCAGCGACGACTCCAGGAACTTTCTGGAAAGCA
CCGGCGTGGAGGGGCGCTTCAGGCTGAGGCGCGGCCACAGGCTGCACCTG
TACATCAGCGAGCCGCCATGCGGCGATGCGTCCATCTACCCGCGCGTTGC
AGATTCGCCGCCTGCAGCGGTGGAAGCGGCAGCGCGTGCCGACACGGCAA
CTGCAGAAGCAGCACTGGATGCAACTCAATTGCCAGCACCAGCGCCACTG
CTGGCGGCGGCAGGAGCGCCTGCTGCCGCTGCAGGAGCAGCACACACTGG
TACTGCGCTGCCGGCGGCGGCCTCAGTGCCAGCGGCAAGAGCAGTGTCTG
TAGCAGCAGCCACCATGGTTCCCGCCCCCGCAGCCGCCTCGCATAGTGTC
AACAGCCCTACATGTCCGCTGAAGCGCGCCAACAACAGCGGCGCAGGTGA
TGCACCGCACGCTAAGAAACCAAAGTTGAACGGGGACAGCACCGAGGGCT
CAGGGCTGCCAAGCGATGGCGCCACAATGGCTGTAACTGCAGAGAACGGC
GATGTGGTGGCTGGCGGCCAGGGTGGCAGTGGTGCGCACGCAGCGGGTGC
AGTGGCGATGGCGTACACGGGAGCCAAGGCGCTGACGCTGGAGCGGGAAG
TGCGGCAGGCGGTGGGGCAGTTGCGGTTGAAGTCGGGCCGCAGCGACCTG
CGGCCGGAAGACCGCACTGAGAGCATGTCCTGCAGTGACAAGCTGGCGCG
CTGGGCGGTGCTCGGGCTGCAGGGGCGCCTGCTGCGACGCTGGCTGGAAC
CCGTGCTGCTGAGCTCTGTCACCGTCAGCGCCGATGCGCGCGCCGCGCCC
GACGCGCAGCGCGCTGCCATGCGCCGCGCCATCTGCGACCGCGCCGCCGC
CGCTGTCGCTGCTGCCACCGCTGTCGCTGCCAGCACGCCGGCGATCCCTG
GTTCAGACATCGCTGATGGCACTGACGCAGCTGCCGCTGCTGCTGCCGCC
GCTGCTGCTGCGCAAGCCCTGGAGCTGTACATAGTCGAAGCACAGTACAA
CCGCGGCAAGCTGCTGGCGCAGCAGCAGCAGGCGGCTGCGCTCGCATCCG
GCGCTGATGCCGCAGCGGCGCGCCCGATACCCTGCGGCTTCTGCCTCAAC
TGGTGGCTGCCGTTCGGCGCCGCCGCCGCTGCGCCGCTGCCGCAGCGCAG
CACCGGCGCCCCCGGCGAGGCGGAAGTTACGCTCGGAGCGCTGGGGCGGC
GGCAGGGACGGCGCATCAACGCGGCATCGCGCTCGCGCCTCTGCAAGGTG
TGCATATTTGAGGGCCTCTGCGGCAGCAGTGGTGACGGCAAGGCGGTCGG
CAAGCCAGGCAGCAGCGGCGGCGCCGGCAGCAGCCGTGGCGGCGGCGGCA
GCAGCGGCGACAGCCGCAGCAACGGCGGAGCACGCGCCAATGGCGGCGGC
GGCAGCAGTGAGGGGACCGCTGCGGCTGACATGATAGCTGCGGCGCTTGC
AGGGCTGACGTATGCTGCAGCGAAAGCGACGGCATGCGAAAGCGCAAACG
CTCAGCGCCAGGCGCTCCTGGAATCCGCGCCTTTCCGAGGCTGGCTCGTG
ACAGACCCTGTGCAAGAGGCATTTGTCATAGAGGCTGCTTCTGCGCCGTC
AGTGCCTGCGGTTGCTGCAGCAGTAGCAGCAGCGGGCGCCGCCGCTGCAG
GCGCCGCTGCGCCTGAGAGCGCGCAATCCGACTCTGGCACTGTAGTGTTG
CCGACATCATCCGTGCACTGA
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