mRNA_13182 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|352243 vs. uniprot
Match: A0A835ZEK1_9STRA (A to I editase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEK1_9STRA) HSP 1 Score: 951 bits (2459), Expect = 0.000e+0 Identity = 656/656 (100.00%), Postives = 656/656 (100.00%), Query Frame = 1
Query: 1 MALGDEVAAAQTSSADAPLAVIALATGTKCMGQSKLPPDGSIVHDSHAEVLARRCLVRLLGEHLRAALTRAGGSDDSRNFLESTGVEGRFRLRRGHRLHLYISEPPCGDASIYPRVADSPPAAVEAAARADTATAEAALDATQLPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMVPAPAAASHSVNSPTCPLKRANNSGAGDAPHAKKPKLNGDSTEGSGLPSDGATMAVTAENGDVVAGGQGGSGAHAAGAVAMAYTGAKALTLEREVRQAVGQLRLKSGRSDLRPEDRTESMSCSDKLARWAVLGLQGRLLRRWLEPVLLSSVTVSADARAAPDAQRAAMRRAICDRAAAXXXXXXXXXXXXXXXPGSDIADGTXAXXXXXXXXXXXQALELYIVEAQYNRGKLLAQQQQAAALASGADAAAARPIPCGFCLNWWLPFGAAAAAPLPQRSTGAPGEAEVTLGALGRRQGRRINAASRSRLCKVCIFEGLCGSSGDGKAVGKPGSSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMIAAALAGLTYAAAKATACESANAQRQALLESAPFRGWLVTDPVQEAFVIEAASAPSVPXXXXXXXXXXXXXXXXXXPESAQSDSGTVVLPTSSVH 1968
MALGDEVAAAQTSSADAPLAVIALATGTKCMGQSKLPPDGSIVHDSHAEVLARRCLVRLLGEHLRAALTRAGGSDDSRNFLESTGVEGRFRLRRGHRLHLYISEPPCGDASIYPRVADSPPAAVEAAARADTATAEAALDATQLPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMVPAPAAASHSVNSPTCPLKRANNSGAGDAPHAKKPKLNGDSTEGSGLPSDGATMAVTAENGDVVAGGQGGSGAHAAGAVAMAYTGAKALTLEREVRQAVGQLRLKSGRSDLRPEDRTESMSCSDKLARWAVLGLQGRLLRRWLEPVLLSSVTVSADARAAPDAQRAAMRRAICDRAAAXXXXXXXXXXXXXXXPGSDIADGTXAXXXXXXXXXXXQALELYIVEAQYNRGKLLAQQQQAAALASGADAAAARPIPCGFCLNWWLPFGAAAAAPLPQRSTGAPGEAEVTLGALGRRQGRRINAASRSRLCKVCIFEGLCGSSGDGKAVGKPGSSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMIAAALAGLTYAAAKATACESANAQRQALLESAPFRGWLVTDPVQEAFVIEAASAPSVPXXXXXXXXXXXXXXXXXXPESAQSDSGTVVLPTSSVH
Sbjct: 1 MALGDEVAAAQTSSADAPLAVIALATGTKCMGQSKLPPDGSIVHDSHAEVLARRCLVRLLGEHLRAALTRAGGSDDSRNFLESTGVEGRFRLRRGHRLHLYISEPPCGDASIYPRVADSPPAAVEAAARADTATAEAALDATQLPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMVPAPAAASHSVNSPTCPLKRANNSGAGDAPHAKKPKLNGDSTEGSGLPSDGATMAVTAENGDVVAGGQGGSGAHAAGAVAMAYTGAKALTLEREVRQAVGQLRLKSGRSDLRPEDRTESMSCSDKLARWAVLGLQGRLLRRWLEPVLLSSVTVSADARAAPDAQRAAMRRAICDRAAAXXXXXXXXXXXXXXXPGSDIADGTXAXXXXXXXXXXXQALELYIVEAQYNRGKLLAQQQQAAALASGADAAAARPIPCGFCLNWWLPFGAAAAAPLPQRSTGAPGEAEVTLGALGRRQGRRINAASRSRLCKVCIFEGLCGSSGDGKAVGKPGSSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMIAAALAGLTYAAAKATACESANAQRQALLESAPFRGWLVTDPVQEAFVIEAASAPSVPXXXXXXXXXXXXXXXXXXPESAQSDSGTVVLPTSSVH 656
BLAST of jgi.p|Trimin1|352243 vs. uniprot
Match: A0A5D6Y1B1_9STRA (A to I editase domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y1B1_9STRA) HSP 1 Score: 114 bits (284), Expect = 6.640e-23 Identity = 115/356 (32.30%), Postives = 157/356 (44.10%), Query Frame = 1
Query: 34 TSSADAPLAVIALATGTKCMGQSKLPPDGSIVHDSHAEVLARRCLVRLLGEHLRAALTRAGGSDDSRNFLESTGVEGRFRLRRGHRLHLYISEPPCGDASIYPRVADSPPAAVEAAARADTATAEAALDATQLPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMVPAPAAASHSVNSPTCPLKRANNSGAGDAPHAKKPKLNGDSTEGSGLPSDGATMAVTAENGDVVAGGQGGSGAHAAGAVAMAYTGAKALTLEREVRQAVGQLRLKSGRSDLRPEDRTESMSCSDKLARWAVLGLQGRLLRRWLEPVLLSSVTVSAD-ARAAPDAQRAAMRRAICDRAA 1098
+S+A+AP V++ TGTKC+G+ L P G ++HD HAE LARR L+R L + A AG D + + GR L+ H LH ++E PCGDA++Y D A V+ A +++A +AL T A KR + S AG ++ + N D + D +T AE D Q GA E QAVG R+KSGRSDL P+ +T SMSCSDKLARWA LG+QG LL ++ +P+ L+SV V D A + AQ+AA+ RA+ R A
Sbjct: 43 SSAAEAPR-VLSAGTGTKCLGRRDLHPRGLVLHDCHAETLARRALLRYL--YAEALAWAAGCEDRAASLFTRNNTSGRLVLKPQHALHFVVTEAPCGDAALYELREDVVDALVQQRASSESAE-RSALRLTGAKAKR-----------------------------------------------------------KREDESDAG-----RRHQRNADGGDVDAC--DNSTGHRNAELADQWCEQQ------------RLPDGAVEPRKETRFEQAVGVARVKSGRSDLLPDKQTLSMSCSDKLARWAALGVQGSLLLQFYDPLFLASVVVLRDDASVSAAAQQAALERAVVGRLA 316
BLAST of jgi.p|Trimin1|352243 vs. uniprot
Match: K3WR94_GLOUD (A to I editase domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WR94_GLOUD) HSP 1 Score: 109 bits (273), Expect = 1.050e-21 Identity = 112/366 (30.60%), Postives = 147/366 (40.16%), Query Frame = 1
Query: 10 GDEVAAAQTSSADAPLAVIALATGTKCMGQSKLPPDGSIVHDSHAEVLARRCLVRLLGEH--LRAALTRAGGSDDSRNFLESTGVEGRFRLRRGHRLHLYISEPPCGDASIYPRVADSPPAAVEAAAR--ADTATAEAALDATQLPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMVPAPAAASHSVNSPTCPLKRANNSGAGDAPHAKKPKLNGDSTEGSGLPSDGATMAVTAENGDVVAGGQGGSGAHAAGAVAMAYTGAKALTLEREVRQAVGQLRLKSGRSDLRPEDRTESMSCSDKLARWAVLGLQGRLLRRWLEPVLLSSVTVSADARAAPDA-QRAAMRRAICDR 1092
G++ +AA SA ++A ATGTKC+G+ L G +V+D HAE+LARR L+R L + A G S + E R L+ H LHLYISE PCGDA+IY D V+ ADT + +A AAA +V T +GA K + + D T S P++ A E+ Q VG R+KSGRSDL P+ +T SMSCSDKLA+W +G+QG LL +W EP+ L S+ VS D A Q A+ RAIC R
Sbjct: 45 GEDPSAAGAESA---FRMLACATGTKCLGRRDLDTRGLVVNDCHAEILARRALLRFLYTEALVWTAAREKGDEPPSTSLFERHPTTHRLVLKPQHTLHLYISEAPCGDAAIYQLRGDIIDELVKQRVERNADTGERPSTTEA----------------------------------------------------AAAIGAVAEDTHERSAFRLTGA------KAKRKHSDETTASSSPNENAQRPP-----------------------------------EKRFDQMVGIARVKSGRSDLPPDKQTLSMSCSDKLAKWNAVGIQGTLLLQWYEPLFLRSIVVSRDDTCVSTAAQYEALERAICGR 314
BLAST of jgi.p|Trimin1|352243 vs. uniprot
Match: D8LI40_ECTSI (A to I editase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI40_ECTSI) HSP 1 Score: 109 bits (273), Expect = 3.120e-21 Identity = 121/408 (29.66%), Postives = 160/408 (39.22%), Query Frame = 1
Query: 55 LAVIALATGTKCMGQSKLPPDGSIVHDSHAEVLARRCLVRLLGEHLRAALTRAGG----------------------------------------------------SDDSRNFL-------ESTGVEGRFRLRRGHRLHLYISEPPCGDASIYPRVADSPPAAVEAAARADTATAEAALDATQLPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMVPAPAAASHSVNSPTCPLKRANNSGAGDAPHAKKPKLNGDSTEGSGLPSDGATMAVTAENGDVVAGGQGGSGAHAAGAVAMAYTGAKALTLEREVRQAVGQLRLKSGRSDLRPEDRTESMSCSDKLARWAVLGLQGRLLRRWLEPVLLSSVTVSADARA-APDAQRAAMRRAICDRAA 1098
L VI+LATG KC+G+ K+P DGS+VHDSHAEVLARR L+ L L ++ A G DD R L G +RL+ RLHLYIS+ PCGDASIY + +P +AR + D++ AP P A S S + ++ GDA A+ ++ PS + + E + A ++ K E Q VG LR+KS RS++ E RT SMSCSDKLA+WA LG+QG LL W+EP+ LSS+ +SAD R P +A+ RAI RAA
Sbjct: 59 LRVISLATGNKCVGRDKIPDDGSVVHDSHAEVLARRALLLRLWRELHLRVSSAAGRQQDVTIDERKGGGTPCNSGRSDGRSTPSSSTTAATVDAHPQPPLYGGVLPGEDDGRILLLERSPQATDAGACISWRLKPYIRLHLYISDAPCGDASIYEQKRQAPNVGGGGSARCGGGDGDPGNDSSWDDAPRS------------------------------------------TPLAGSRSDGE----RRGRGDADRGDAKRARCAVAIAGLSDAV-APSPRPDLPLDEER--------------SCSAASLNPLDCKPREPEE---QQVGALRIKSSRSNISEEGRTMSMSCSDKLAKWAFLGVQGGLLASWVEPIFLSSIVISADPRTDGPAPLASALTRAIPGRAA 402
BLAST of jgi.p|Trimin1|352243 vs. uniprot
Match: A0A6A3P3D5_9STRA (A to I editase domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3P3D5_9STRA) HSP 1 Score: 104 bits (259), Expect = 5.330e-20 Identity = 106/349 (30.37%), Postives = 134/349 (38.40%), Query Frame = 1
Query: 61 VIALATGTKCMGQSKLPPDGSIVHDSHAEVLARRCLVRLL-GEHLRAALTRAGGSDDSRNFLESTGVEGRFRLRRGHRLHLYISEPPCGDASIYPRVADSPPAAV---EAAARADTATAEAALDATQLPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMVPAPAAASHSVNSPTCPLKRANNSGAGDAPHAKKPKLNGDSTEGSGLPSDGATMAVTAENGDVVAGGQGGSGAHAAGAVAMAYTGAKALTLEREVRQAVGQLRLKSGRSDLRPEDRTESMSCSDKLARWAVLGLQGRLLRRWLEPVLLSSVTVSADARAAPDA-QRAAMRRAICDR 1092
V+A+ATGTKC+G+ L DG +V+D HAEVLARR L+R L E L + SD S E R L+ H LHL+ISE PCGDA+IY D V E D +E L G H K + GD + P ++ QAVG R+KSGRSDL + +T SMSCSDKLA+W LGLQG LL ++ EPV LSS+ VS D +A A Q+ A++RA+C R
Sbjct: 60 VLAVATGTKCLGRRDLNVDGLVVNDCHAEVLARRALLRYLYAEALHWQVNGPESSDQS--IFERHPTSSRLVLKPQHSLHLFISEAPCGDAAIYELRQDVVDELVHQREGREANDGERSELRL---------------------------------------------------------------------------TGAKAHVNKRRRGGDPDDHDTPP-------------------------------------------DKRFAQAVGITRVKSGRSDLPADKQTLSMSCSDKLAKWNALGLQGSLLLQFYEPVFLSSIVVSEDEQALSVAKQQQALQRAVCGR 288
BLAST of jgi.p|Trimin1|352243 vs. uniprot
Match: A0A3M6VCX4_9STRA (A to I editase domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VCX4_9STRA) HSP 1 Score: 104 bits (259), Expect = 5.840e-20 Identity = 103/352 (29.26%), Postives = 133/352 (37.78%), Query Frame = 1
Query: 61 VIALATGTKCMGQSKLPPDGSIVHDSHAEVLARRCLVRLLGEHLRAALTRAGGSDDS-RNFLESTGVEGRFRLRRGHRLHLYISEPPCGDASIYPRVADSPPAAVEAAARADTATAEAALDATQLPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMVPAPAAASHSVNSPTCPLKRANNSGAGDAPHAKKPKLNGDSTEGSGLPSDGATMAVTAENGDVVAGGQGGSGAHAAGAVAMAYTGAK------ALTLEREVRQAVGQLRLKSGRSDLRPEDRTESMSCSDKLARWAVLGLQGRLLRRWLEPVLLSSVTVSADARAAPDA-QRAAMRRAICDR 1092
V+ ATG KC+G+ L DG +V+D HAEVLARR L+R L ++ A L + S+ + ++ E R L+ H LHL+ISE PCGDA+IY +V A +S + T EN H + TGAK L + Q VG R+KSGRSDL + +T SMSCSDKLA+W LGLQG LL +W EP+ LSSV VS D +A A Q A+RRA+C R
Sbjct: 61 VLTAATGNKCLGRRDLNADGFVVNDCHAEVLARRALLRYL--YIEALLWKENKSESNEQSIFEYHSTSRRLVLKPQHSLHLFISEAPCGDAAIY------------------------------------------------------------------ELRQEVVNQLVQQRRAGCNSTDDET-------------------------------------------EN-------------HVPSRSELRVTGAKRPRHRDTLLPDNRFTQTVGVARVKSGRSDLPLDKQTLSMSCSDKLAKWNALGLQGSLLLQWFEPIFLSSVCVSGDDKAMSVAKQERALRRAVCTR 288
BLAST of jgi.p|Trimin1|352243 vs. uniprot
Match: A0A833X2Q8_PHYIN (Adenosine-deaminase (Editase) domain n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833X2Q8_PHYIN) HSP 1 Score: 103 bits (256), Expect = 9.410e-20 Identity = 102/348 (29.31%), Postives = 138/348 (39.66%), Query Frame = 1
Query: 55 LAVIALATGTKCMGQSKLPPDGSIVHDSHAEVLARRCLVRLLGEHLRAALTRAGGSDDSRNFL-ESTGVEGRFRLRRGHRLHLYISEPPCGDASIYPRVADSPPAAVEAAARADTATAEAALDATQLPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMVPAPAAASHSVNSPTCPLKRANNSGAGDAPHAKKPKLNGDSTEGSGLPSDGATMAVTAENGDVVAGGQGGSGAHAAGAVAMAYTGAKALTLEREVRQAVGQLRLKSGRSDLRPEDRTESMSCSDKLARWAVLGLQGRLLRRWLEPVLLSSVTVSADARA-APDAQRAAMRRAICDR 1092
L V+A+ATG KC+G+ L DG +V+D HAEVLARR L+R L + A + G + S + + E R L+ H LHL+ISE PCGDA+IY D V + A +L G H+K+P+ + D+ + L +++ QAVG R+KSGRSDL E +T SMSCSDKLA+W LGLQG LL +W EP+ LSS+ VS D A + Q A++RA+C R
Sbjct: 52 LRVLAVATGNKCLGRRDLNADGLVVNDCHAEVLARRALLRYL--YAEALSWQENGLELSEHSIFERHSTSRRLVLKPQHSLHLFISEAPCGDAAIYELRHDVVDELVHQREAKTGQAGQRERSALRL----------------------------------------------------------------------TGAKAHSKRPR-DQDTDD---------------------------------------------LQPDKKFAQAVGIARVKSGRSDLPLEKQTLSMSCSDKLAKWNALGLQGSLLLQWFEPIFLSSIIVSKDEEALSVTKQEYALQRALCTR 281
BLAST of jgi.p|Trimin1|352243 vs. uniprot
Match: A0A6J1DTU3_MOMCH (tRNA-specific adenosine deaminase 1 isoform X4 n=1 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1DTU3_MOMCH) HSP 1 Score: 101 bits (252), Expect = 1.440e-19 Identity = 58/130 (44.62%), Postives = 78/130 (60.00%), Query Frame = 1
Query: 55 LAVIALATGTKCMGQSKLPPDGSIVHDSHAEVLARRCLVRLL-------------GEHLRAALTRAGGSDDSRNFL----ESTGVEGRFRLRRGHRLHLYISEPPCGDAS------IYPRVADSPPAAVE 375
L V+AL TGTKC+G+S+L P+G IV+DSHAE++ARR L+R EH R +R SDD +N L E G G++ +R+G +LHLYIS+ PCGDAS + PR D+PP +E
Sbjct: 54 LQVVALGTGTKCLGRSQLSPNGDIVNDSHAEIIARRALMRFFYAQIQHLSQNNCDSEHHRMKRSR---SDDVKNILFELDEEAGAGGKYVMRKGWKLHLYISQLPCGDASSSTPRNVQPRTEDAPPCLIE 180
BLAST of jgi.p|Trimin1|352243 vs. uniprot
Match: A0A6J1DPP1_MOMCH (tRNA-specific adenosine deaminase 1 isoform X1 n=3 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1DPP1_MOMCH) HSP 1 Score: 101 bits (252), Expect = 2.360e-19 Identity = 58/130 (44.62%), Postives = 78/130 (60.00%), Query Frame = 1
Query: 55 LAVIALATGTKCMGQSKLPPDGSIVHDSHAEVLARRCLVRLL-------------GEHLRAALTRAGGSDDSRNFL----ESTGVEGRFRLRRGHRLHLYISEPPCGDAS------IYPRVADSPPAAVE 375
L V+AL TGTKC+G+S+L P+G IV+DSHAE++ARR L+R EH R +R SDD +N L E G G++ +R+G +LHLYIS+ PCGDAS + PR D+PP +E
Sbjct: 54 LQVVALGTGTKCLGRSQLSPNGDIVNDSHAEIIARRALMRFFYAQIQHLSQNNCDSEHHRMKRSR---SDDVKNILFELDEEAGAGGKYVMRKGWKLHLYISQLPCGDASSSTPRNVQPRTEDAPPCLIE 180
BLAST of jgi.p|Trimin1|352243 vs. uniprot
Match: F2ECL2_HORVV (Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=F2ECL2_HORVV) HSP 1 Score: 94.7 bits (234), Expect = 7.880e-18 Identity = 50/110 (45.45%), Postives = 75/110 (68.18%), Query Frame = 1
Query: 19 VAAAQTSSADAPL--AVIALATGTKCMGQSKLPPDGSIVHDSHAEVLARRCLVRLLGEHLRAALTRAGGSDDSRNFLESTGVEGRFRLRRGHRLHLYISEPPCGDASIYP 342
+AA SS + PL V++LATGTKC+G ++L P G +VHD+HAEV+ARR L+RL+ + G+D+ ++L ++G +GR+RL GH+LHLYI++ PCG + P
Sbjct: 44 LAAFLLSSPENPLNPTVLSLATGTKCLGAARLGPRGDLVHDAHAEVIARRALLRLIYAEI--------GTDNPPSWLVASGTDGRWRLNDGHQLHLYITQIPCGVMPVPP 145 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352243 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13182 ID=mRNA_13182|Name=jgi.p|Trimin1|352243|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1971bp|location=Sequence derived from alignment at Contig_113:205298..208110- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGCACTCGGCGATGAAGTGGCGGCAGCGCAAACCTCCAGCGCCGACGCback to top protein sequence of jgi.p|Trimin1|352243 >Trimin1|352243|estExt_Genemark1.C_Ctg_1130025 ID=Trimin1|352243|estExt_Genemark1.C_Ctg_1130025|Name=jgi.p|Trimin1|352243|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=657bp MALGDEVAAAQTSSADAPLAVIALATGTKCMGQSKLPPDGSIVHDSHAEVback to top mRNA from alignment at Contig_113:205298..208110- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_13182 ID=mRNA_13182|Name=jgi.p|Trimin1|352243|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2813bp|location=Sequence derived from alignment at Contig_113:205298..208110- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_113:205298..208110- >mRNA_13182 ID=mRNA_13182|Name=jgi.p|Trimin1|352243|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1971bp|location=Sequence derived from alignment at Contig_113:205298..208110- (Tribonema minus UTEX_B_3156 )back to top |