mRNA_13160 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352228
Unique NamemRNA_13160
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|352228 vs. uniprot
Match: A0A835ZG61_9STRA (Polynucleotide adenylyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG61_9STRA)

HSP 1 Score: 1196 bits (3094), Expect = 0.000e+0
Identity = 658/658 (100.00%), Postives = 658/658 (100.00%), Query Frame = 1
Query:    1 MASTTPKPVQCFPVINNDPPTDKDRANDAKLFEYIAANVPVMSKQEMMHRERVLTEVTQIFKRWVRETCLAKGVPEEVARAAGGIIRTSGSYRLAIHEPGSDIDAHCIAPMPCTRADFFTSLRKLLQDHPEVTNFNAIETAAVPIMTFDFDGVNIDLGLGCLPVESVSEDFNIDDDAVLKGVDSATEKCLNGPRVTNLIHRLVPNYASFLPVVRLVRVWAKRRGIYGNKMGYLGGVNFNILVAFACQLYPRASPSKLLASFFKVMHSWAWPNPIHLTRPHDAALGLQVWQAAQNPWHVMPIITPAYPAMNSSLAVSAHSLEVMRREFRRGDAICRRVLDGGAEGASWDELVRPSEFFAMYSHYLAIDVMAGGEEEFRGWRGYMESRVRKLLDNFTYMRIPARDLHLYPRAFDRCCSGGVNGELPAHCVCFFVGFNVDRARLAAGRRLDVGHAFQKFEESATGVPWLKEGMCLALTAYSFKTLPAWTADELGGRDAARALRAALRAKDDATRKATLAXXXXXXLAQRPQLAXXXXXXXXXXXXXXXXXXXXXXXXXEAAVGGEGDLLEQEWEGEXXXXXXXXXXXXXXXXXXXYAKLSDAAKAEXXXXXXXXKRPATRDFFVLEPVVPQWRRAALEAAGQAKRVRIQLLPPAPAQAASR 1974
            MASTTPKPVQCFPVINNDPPTDKDRANDAKLFEYIAANVPVMSKQEMMHRERVLTEVTQIFKRWVRETCLAKGVPEEVARAAGGIIRTSGSYRLAIHEPGSDIDAHCIAPMPCTRADFFTSLRKLLQDHPEVTNFNAIETAAVPIMTFDFDGVNIDLGLGCLPVESVSEDFNIDDDAVLKGVDSATEKCLNGPRVTNLIHRLVPNYASFLPVVRLVRVWAKRRGIYGNKMGYLGGVNFNILVAFACQLYPRASPSKLLASFFKVMHSWAWPNPIHLTRPHDAALGLQVWQAAQNPWHVMPIITPAYPAMNSSLAVSAHSLEVMRREFRRGDAICRRVLDGGAEGASWDELVRPSEFFAMYSHYLAIDVMAGGEEEFRGWRGYMESRVRKLLDNFTYMRIPARDLHLYPRAFDRCCSGGVNGELPAHCVCFFVGFNVDRARLAAGRRLDVGHAFQKFEESATGVPWLKEGMCLALTAYSFKTLPAWTADELGGRDAARALRAALRAKDDATRKATLAXXXXXXLAQRPQLAXXXXXXXXXXXXXXXXXXXXXXXXXEAAVGGEGDLLEQEWEGEXXXXXXXXXXXXXXXXXXXYAKLSDAAKAEXXXXXXXXKRPATRDFFVLEPVVPQWRRAALEAAGQAKRVRIQLLPPAPAQAASR
Sbjct:    1 MASTTPKPVQCFPVINNDPPTDKDRANDAKLFEYIAANVPVMSKQEMMHRERVLTEVTQIFKRWVRETCLAKGVPEEVARAAGGIIRTSGSYRLAIHEPGSDIDAHCIAPMPCTRADFFTSLRKLLQDHPEVTNFNAIETAAVPIMTFDFDGVNIDLGLGCLPVESVSEDFNIDDDAVLKGVDSATEKCLNGPRVTNLIHRLVPNYASFLPVVRLVRVWAKRRGIYGNKMGYLGGVNFNILVAFACQLYPRASPSKLLASFFKVMHSWAWPNPIHLTRPHDAALGLQVWQAAQNPWHVMPIITPAYPAMNSSLAVSAHSLEVMRREFRRGDAICRRVLDGGAEGASWDELVRPSEFFAMYSHYLAIDVMAGGEEEFRGWRGYMESRVRKLLDNFTYMRIPARDLHLYPRAFDRCCSGGVNGELPAHCVCFFVGFNVDRARLAAGRRLDVGHAFQKFEESATGVPWLKEGMCLALTAYSFKTLPAWTADELGGRDAARALRAALRAKDDATRKATLAXXXXXXLAQRPQLAXXXXXXXXXXXXXXXXXXXXXXXXXEAAVGGEGDLLEQEWEGEXXXXXXXXXXXXXXXXXXXYAKLSDAAKAEXXXXXXXXKRPATRDFFVLEPVVPQWRRAALEAAGQAKRVRIQLLPPAPAQAASR 658          
BLAST of jgi.p|Trimin1|352228 vs. uniprot
Match: A0A6H5JKW8_9PHAE (Polynucleotide adenylyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKW8_9PHAE)

HSP 1 Score: 518 bits (1334), Expect = 2.670e-172
Identity = 262/498 (52.61%), Postives = 335/498 (67.27%), Query Frame = 1
Query:    4 ASTTPKPVQCFPVINNDPPTDKDRANDAKLFEYIAANVPVMSKQEMMHRERVLTEVTQIFKRWVRETCLAKGVPEEVARAAGGIIRTSGSYRLAIHEPGSDIDAHCIAPMPCTRADFFTSLRKLLQDHPEVTNFNAIETAAVPIMTFDFDGVNIDLGLGCLPVESVSEDFNIDDDAVLKGVDSATEKCLNGPRVTNLIHRLVPNYASFLPVVRLVRVWAKRRGIYGNKMGYLGGVNFNILVAFACQLYPRASPSKLLASFFKVMHSWAWPNPIHLTRPHDAALGLQVWQAAQNPWHVMPIITPAYPAMNSSLAVSAHSLEVMRREFRRGDAICRRVLDGGAEGASWDELVRPSEFFAMYSHYLAIDVMAGGEEEFRGWRGYMESRVRKLLDNFTYMRIPARDLHLYPRAFDRCCSGGVNGELPAHCVCFFVGFNVDRARLAAGRRLDVGHAFQKFE-ES---ATGVPWLKEGMCLALTAYSFKTLPAWTADELGGRDA 1485
            A   P+P+  +  IN   P+  D   DAKL  ++  NVPVM+  ++  RE+VL ++  +F +WV ++ L  G+ EE A+AAGG I TSGSYRL IHEP SDIDA C+AP  CT   FFT+L++ L  HP V N NAI+TAAVPI+   FD ++IDLGL CLPV +V    +IDDD VL GVD  TEKC+NGPRVTN+IHRLVPNY SFLPVVR VR WAK RG+Y NKMGYLGGVNFNI+VAFACQ+YP A PS LL  FFK+M  W WPN I L +P+DA LGL+VW A  N WH MPIITPAYP MNSS  VS  +L+VM  EF RG  +   ++      +++ +L  PS+FF  Y+HYLA+D+MA  EEE R W G++ESR+RKL++      +P + +HL+P+ F+ C  GGV GELPAH V +F+G  +D  R   G  LDV     +F  ES   AT   + + GM +  TA S+K LP +  + +GG +A
Sbjct:   21 AGHVPRPM--YEPINTSAPSKTDLELDAKLEAFMRDNVPVMTSVDLRRREQVLGKIRAMFLQWVIDSALEAGMSEEAAKAAGGKIYTSGSYRLRIHEPNSDIDAICVAPQFCTSELFFTTLKERLIAHPLVANVNAIQTAAVPIIELVFDEIDIDLGLACLPVPTVPPTLDIDDDQVLDGVDRPTEKCVNGPRVTNMIHRLVPNYDSFLPVVRCVRKWAKSRGLYSNKMGYLGGVNFNIMVAFACQMYPNAGPSTLLHRFFKLMAGWNWPNAIQLVQPYDAELGLEVWNARANSWHCMPIITPAYPVMNSSANVSRFTLDVMTSEFSRGLEVVNGIMKEKGSLSAFSKLFEPSDFFLRYNHYLAVDMMASSEEEHRAWVGWVESRLRKLVEGLGLSGLPFKRVHLWPKKFEGCVGGGVGGELPAHSVAYFIGLEIDPRRSKKGAVLDVDKVTNRFRMESVGHATSRGFHRPGMDVMATAKSWKDLPGFVFESIGGSEA 516          
BLAST of jgi.p|Trimin1|352228 vs. uniprot
Match: A0A8K1CSA9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CSA9_PYTOL)

HSP 1 Score: 437 bits (1123), Expect = 3.690e-141
Identity = 230/497 (46.28%), Postives = 315/497 (63.38%), Query Frame = 1
Query:   28 QCFPVINNDPPTDKDRANDAKLFEYIAANVPVMSKQEMMHRERVLTEVTQIFKRWVRETCLAKGVPEEVARAAGGIIRTSGSYRLAIHEPGSDIDAHCIAPMPCTRADFFTSLRKLLQDHPEVTNFNAIETAAVPIMTFDFDGVNIDLGLGCLPVESVSEDFNIDDDAVLKGVDSATEKCLNGPRVTNLIHRLVPNYASFLPVVRLVRVWAKRRGIYGNKMGYLGGVNFNILVAFACQLYPRASPSKLLASFFKVMHSWAWPNPIHLTRPHDAALGLQVWQA--AQNPWHVMPIITPAYPAMNSSLAVSAHSLEVMRREFRRGDAICRRVLDGGAEGASWDELVRPSEFFAMYSHYLAIDVMAGGEEEFRGWRGYMESRVRKLLDNFTYMRIPARDLHLYPRAFDRCCS--GGVNGELPAHCVCFFVGFNVDRARLAAGRRLDVGHAFQKFEESATGVPWLKEG--MCLALTAYSFKTLPAWTADELGGRDAARALR 1500
            Q +  I   PP  KD     KL  Y+  +    S + +  R  +L ++   F+ WV++ CLAKGVPEE+A  AGG I  SGSYRL ++EPG+DID  C+AP   TR DFF++L+ +   HP+VTN  AIE A VPI+TFD++ +NIDL +  LP  ++ ++ NI DD +L GVD+ATEK LNGPRVT L+ +L PN  SF+ V+R+VR WAKRRG+Y NKMGYLGGVN+ ILV F  QLYP A+PS LL  FF V+ +W WP  I L + +DA LGL+VW A    N +HVMPI+TPAYP+MNSS  VS HSL VM+ EF+RG  + + +L  G  G  WD L  PS+FFA+  HYLA+DV    E+E + W G+ ESR+RKL+D+  Y+    R +  +P+ F    +  G   G    + VC+FV F+VDR +L  G+ + + ++   F ++     W K    M + +T   +K LP    +++GGR  AR +R
Sbjct:   15 QAYKAIRTTPPEPKDLEQSDKLQTYMDKHFATESDENIQRRSLILADLRATFREWVKQVCLAKGVPEEIAADAGGQILVSGSYRLGVNEPGADIDTICVAPRHVTREDFFSTLKDIFLKHPKVTNLVAIEGAIVPILTFDYEEINIDLQIAILPRNTIPDNLNILDDNILAGVDTATEKSLNGPRVTELMIKLTPNRESFIGVLRVVRRWAKRRGLYSNKMGYLGGVNWCILVCFVNQLYPTAAPSTLLLRFFMVLSTWKWPLAIQLCKTYDAKLGLEVWNANSGNNRYHVMPILTPAYPSMNSSFNVSTHSLSVMKDEFKRGLDLVQDILGKG--GDDWDALFEPSDFFAVQQHYLAVDVYTTKEDEEQAWCGFCESRIRKLVDSLAYIPQLCR-IRAFPKKFPLSYADDGAAAGATKKYGVCYFVAFDVDRRKLM-GKEVSIDNSVHYFTQNDL-YRWNKRTATMDVTVTPTVWKNLPESVFEDMGGRAVARNVR 506          
BLAST of jgi.p|Trimin1|352228 vs. uniprot
Match: D0MYH7_PHYIT (Poly(A) polymerase n=12 Tax=Phytophthora TaxID=4783 RepID=D0MYH7_PHYIT)

HSP 1 Score: 437 bits (1124), Expect = 6.770e-141
Identity = 236/506 (46.64%), Postives = 318/506 (62.85%), Query Frame = 1
Query:   28 QCFPVINNDPPTDKDRANDAKLFEYIAANVPVMSKQEMMHRERVLTEVTQIFKRWVRETCLAKGVPEEVARAAGGIIRTSGSYRLAIHEPGSDIDAHCIAPMPCTRADFFTSLRKLLQDHPEVTNFNAIETAAVPIMTFDFDGVNIDLGLGCLPVESVSEDFNIDDDAVLKGVDSATEKCLNGPRVTNLIHRLVPNYASFLPVVRLVRVWAKRRGIYGNKMGYLGGVNFNILVAFACQLYPRASPSKLLASFFKVMHSWAWPNPIHLTRPHDAALGLQVWQA--AQNPWHVMPIITPAYPAMNSSLAVSAHSLEVMRREFRRGDAICRRVLDGGAEGASWDELVRPSEFFAMYSHYLAIDVMAGGEEEFRGWRGYMESRVRKLLDNFTY------MRIPARDLHL-YPRAFDRCCSGGVNGELPAHC----VCFFVGFNVDRARLAAGRRLDVGHAFQKFEESATGVPWLKEG--MCLALTAYSFKTLPAWTADELGGRDAARALR 1500
            Q +  I   PP  KD    AKL  Y+  + P  S   +  R  +L E+  IF+ WV++ C+ KGVPEE+A  AGG I  SGSYRL ++EPG+DID  C+AP   TR DFF+SL+++   HP+V+   AIE A VP++TFD++ +NIDL +  LP  S+ E+ NI DD VL GVD ATEK LNGPRVT L+ +L PN  SF+ V+R+VR WAKRRG+Y NKMGYLGGVN+ ILV F  QLYP A+PS LL  FF V+++W WP  I L + HDA LGL+VW A    N + VMPI+TPAYP+MNSS  VS HSL VM+ EF+RG  I + VL  G  G+ W  L  PSEFFA++ HYLA++V    ++E + W  + ESR+RKL+++  Y      +R+  +   L Y  A +    G  NG+ PA       CF+VGF++DR +L + R + +  + + F+ +     W K    M + +T   +K LP    +E+GGR  ARA R
Sbjct:   15 QAYKAIRTTPPEPKDLEQSAKLQTYMDEHFPTESDANITRRSLILAELRSIFRAWVKQVCMEKGVPEEMAADAGGQILVSGSYRLGVNEPGADIDTICVAPRHVTREDFFSSLKEIFLKHPKVSQLVAIEGAIVPLITFDYEEINIDLQIAILPRNSIPENLNILDDHVLVGVDPATEKSLNGPRVTELMIKLTPNRESFISVLRIVRRWAKRRGLYSNKMGYLGGVNWCILVCFINQLYPTAAPSTLLLRFFMVLNNWKWPLAIQLCKTHDAKLGLEVWNANAGHNRYQVMPILTPAYPSMNSSFNVSTHSLTVMKEEFKRGLTIVQDVLSKG--GSEWGPLFEPSEFFAVHQHYLAVEVYTEKQDEEQAWCSFCESRMRKLVESLAYNPALCRLRVYTKKFSLSYVTAGEAPVGGQSNGQPPAQPSKFGACFYVGFDIDRRQLRS-REVSIDSSVEYFKNNDL-YRWNKRTPTMDVRVTPVLWKALPESVFEEMGGRTVARAAR 516          
BLAST of jgi.p|Trimin1|352228 vs. uniprot
Match: G4YPR7_PHYSP (Poly(A) polymerase n=7 Tax=Phytophthora TaxID=4783 RepID=G4YPR7_PHYSP)

HSP 1 Score: 435 bits (1119), Expect = 4.120e-140
Identity = 237/509 (46.56%), Postives = 317/509 (62.28%), Query Frame = 1
Query:   28 QCFPVINNDPPTDKDRANDAKLFEYIAANVPVMSKQEMMHRERVLTEVTQIFKRWVRETCLAKGVPEEVARAAGGIIRTSGSYRLAIHEPGSDIDAHCIAPMPCTRADFFTSLRKLLQDHPEVTNFNAIETAAVPIMTFDFDGVNIDLGLGCLPVESVSEDFNIDDDAVLKGVDSATEKCLNGPRVTNLIHRLVPNYASFLPVVRLVRVWAKRRGIYGNKMGYLGGVNFNILVAFACQLYPRASPSKLLASFFKVMHSWAWPNPIHLTRPHDAALGLQVWQA--AQNPWHVMPIITPAYPAMNSSLAVSAHSLEVMRREFRRGDAICRRVLDGGAEGASWDELVRPSEFFAMYSHYLAIDVMAGGEEEFRGWRGYMESRVRKLLDNFTYMRIPARDLHLYPRAFDRCCSGGVNGELPA--------------HCVCFFVGFNVDRARLAAGRRLDVGHAFQKFEESATGVPWLKEG--MCLALTAYSFKTLPAWTADELGGRDAARALR 1500
            Q +  I   PP  KD    AKL  ++  + P  S   +  R  +L E+  IF++WV++ C+ KGVPEE+A  AGG I  SGSYRL ++EPG+DID  C+AP   TR DFF+SL+++   HP+V+N  AIE A VPI+TFD++ +NIDL +  LP  S+ E+ NI DD VL GVD ATEK LNGPRVT L+ +L PN  SF+ V+R+VR WAKRRG+Y NKMGYLGGVN+ ILV F  QLYP A+PS LL  FF V+++W WP  I L + HDA LGL+VW A    N + VMPI+TPAYP+MNSS  VS HSL VM+ EF+RG  I + VL  G  G+ W  L  PS+FFA++ HYLA++V    +EE   W G+ ESR+RKL+++  Y     R L  Y + F      G  GE PA                VCF+VGF++DR +L + R + + ++ + F+ +     W K    M + +T   +K LP    +++GGR  AR  R
Sbjct:   15 QAYKAIRTTPPEPKDLEQSAKLQSFMDEHFPTESDANITRRSLILAELRSIFRQWVKQVCMDKGVPEEMAADAGGQILVSGSYRLGVNEPGADIDTICVAPRHVTREDFFSSLKEIFLQHPKVSNLVAIEGAIVPILTFDYEEINIDLQIAILPRNSIPENLNILDDHVLVGVDPATEKSLNGPRVTELMIKLTPNRESFISVLRIVRRWAKRRGLYSNKMGYLGGVNWCILVCFINQLYPTAAPSTLLLRFFMVLNNWKWPLAIQLCKTHDANLGLEVWNANAGHNRYQVMPILTPAYPSMNSSFNVSTHSLTVMKEEFKRGLTIVQDVLSKG--GSEWGPLFEPSDFFAVHQHYLAVEVYTEKQEEEAAWCGFCESRMRKLVESLAYNPALCR-LRAYTKKFPLSFVTG--GEAPAGEQPNGAALAQPSKFGVCFYVGFDIDRRQLRS-REVSIDNSVEYFKNNDL-YRWNKRTPTMDVRVTPVVWKALPESVFEDMGGRAVARVAR 516          
BLAST of jgi.p|Trimin1|352228 vs. uniprot
Match: A0A1V9ZUP3_9STRA (Poly(A) polymerase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZUP3_9STRA)

HSP 1 Score: 429 bits (1104), Expect = 1.530e-138
Identity = 219/495 (44.24%), Postives = 310/495 (62.63%), Query Frame = 1
Query:   28 QCFPVINNDPPTDKDRANDAKLFEYIAANVPVMSKQEMMHRERVLTEVTQIFKRWVRETCLAKGVPEEVARAAGGIIRTSGSYRLAIHEPGSDIDAHCIAPMPCTRADFFTSLRKLLQDHPEVTNFNAIETAAVPIMTFDFDGVNIDLGLGCLPVESVSEDFNIDDDAVLKGVDSATEKCLNGPRVTNLIHRLVPNYASFLPVVRLVRVWAKRRGIYGNKMGYLGGVNFNILVAFACQLYPRASPSKLLASFFKVMHSWAWPNPIHLTRPHDAALGLQVWQA--AQNPWHVMPIITPAYPAMNSSLAVSAHSLEVMRREFRRGDAICRRVLDGGAEGASWDELVRPSEFFAMYSHYLAIDVMAGGEEEFRGWRGYMESRVRKLLDNFTYMRIPARDLHLYPRAFDRCCSGGVNGELPAHCVCFFVGFNVDRARLAAGRRLDVGHAFQKFEESATGVPWLK--EGMCLALTAYSFKTLPAWTADELGGRDAARALR 1500
            Q +  I   PP   D     KL  Y+  + P+  ++ +  R  +L E+  IF+ WV++ CL +G+PEE+A  AGGII  SGSYRL ++EPG+DID  C+AP   TR DFFTSL+ +L  H +VTN  AIE A VPI+TFD++ +NIDL +  L   S+ ++ N+ DD +  GVD+ATEK LNGPRVT L+ +L PN ASF+ V+R+VR WAK+RG+Y NKMGYLGGVN+ ILV F  QLYP A+PS LL  FF ++ +W WP  I L + HDA LGL+VW A    N + VMPI+TPAYP+MNSS  VS HSL VM+ EF+RG  + + ++  G  G+ W  L  P+ +F  + HYLA+++     ++   W GY ESR+RKL+D+  Y       L ++P+ F        + E P H   +FV F+VD+ +L   + + +  A   F+ ++    W K  EGM + +T   +K LP +  ++LGG+  A+ +R
Sbjct:   13 QAYKAIRTTPPEPVDLELSTKLQSYMDEHFPMEVEKNIQRRTIILGELRSIFRAWVKDVCLTRGLPEEIANEAGGIILVSGSYRLGVNEPGADIDTICVAPKFVTREDFFTSLKDILLKHVKVTNLVAIEGAVVPILTFDYEEINIDLQIAILERNSIPDNLNVLDDNIFVGVDTATEKSLNGPRVTELVIKLTPNRASFIAVLRIVRRWAKKRGLYSNKMGYLGGVNYCILVCFINQLYPTAAPSTLLLRFFMILTNWKWPLAIQLCKTHDAKLGLEVWNANVGGNKYQVMPILTPAYPSMNSSYNVSVHSLNVMKEEFKRGLEVVKTIIKDG--GSDWSALFEPTPYFVDHQHYLAVEIFTSNPDDSAAWCGYAESRLRKLVDSLAYYNPQLCRLRVHPKKFPLTYVND-DPEDPKHGGTYFVAFDVDKLKLRNSKEIHLNGAVDDFKLTSL-YRWPKRVEGMDVKITPVVWKNLPEFVFEDLGGKKVAKEMR 503          
BLAST of jgi.p|Trimin1|352228 vs. uniprot
Match: W4GFD2_9STRA (Poly(A) polymerase n=11 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GFD2_9STRA)

HSP 1 Score: 428 bits (1100), Expect = 4.610e-138
Identity = 223/491 (45.42%), Postives = 315/491 (64.15%), Query Frame = 1
Query:   28 QCFPVINNDPPTDKDRANDAKLFEYIAANVPVMSKQEMMHRERVLTEVTQIFKRWVRETCLAKGVPEEVARAAGGIIRTSGSYRLAIHEPGSDIDAHCIAPMPCTRADFFTSLRKLLQDHPEVTNFNAIETAAVPIMTFDFDGVNIDLGLGCLPVESVSEDFNIDDDAVLKGVDSATEKCLNGPRVTNLIHRLVPNYASFLPVVRLVRVWAKRRGIYGNKMGYLGGVNFNILVAFACQLYPRASPSKLLASFFKVMHSWAWPNPIHLTRPHDAALGLQVWQA--AQNPWHVMPIITPAYPAMNSSLAVSAHSLEVMRREFRRGDAICRRVLDGGAEGASWDELVRPSEFFAMYSHYLAIDVMAGGEEEFRGWRGYMESRVRKLLDNFTYMRIPARDLHLYPRAFDRCCSGGVNGELPAHCVCFFVGFNVDRARLAAGRRLDVGHAFQKFE-ESATGVPWLKEGMCLALTAYSFKTLPAWTADELGGRDAAR 1491
            Q +  I   PP   D    AKL  ++A++ P  +++ +  R  +L E+ +IF+ WV++ CL +GV EE+A  AGG +  SGSYRL ++EPG+DID +C+AP   TR DFF+SL+++L  HP+VTN  AIE A VPI+TFD++ +NIDL +  L + S+ ++ NI DD +L+GVDSATEK LNGPRVT L+  L PN +SF+ V+R+VR WAKRRG+Y NK+GYLGGVN+ ILV F  QLYP A+PS LL  FF V+  W WP+ I L + +DA LGL++W A    N + VMPI+TPAYP+MNSS  VS HSL VM+ EF RG A+ + ++  G  GA W  L  PSE+F  + HYLA+++      +   W G+ ESR+RK +++  Y       L +YP+ FD  CS    G+    C  +FV F+VD+ +L  G+ + +  A   F+  S    P   +GM + +TA  +K+LP     ++GG  AA+
Sbjct:   17 QAYKPIRMTPPEPVDVELSAKLEAFMASHFPTETEKNIQRRTMILAELRRIFRAWVKDVCLQRGVLEEIANEAGGTVLVSGSYRLGVNEPGADIDTNCVAPKFVTREDFFSSLKEILLKHPKVTNLVAIEGATVPILTFDYEDINIDLQIAILNLSSIPDNINILDDNILRGVDSATEKSLNGPRVTELMINLTPNRSSFIAVLRIVRRWAKRRGLYSNKLGYLGGVNWCILVCFINQLYPTAAPSTLLLRFFMVLSQWKWPSAIQLCKTYDAKLGLEIWNANVGGNRFQVMPILTPAYPSMNSSYNVSVHSLSVMKEEFARGYAMVKTIIAAG--GADWAPLFDPSEYFVDHQHYLAVEMYVADAADQGAWCGFAESRLRKFIESLAYHNPQLCRLRVYPKKFD-LCSEDAQGKFG--CT-YFVAFDVDKTKLR-GKEVRLDSAVDDFKLNSLYRWPKRVDGMDVRITALGWKSLPEAVFHDMGGLKAAK 500          
BLAST of jgi.p|Trimin1|352228 vs. uniprot
Match: F0W0R2_9STRA (Poly(A) polymerase n=4 Tax=Albugo TaxID=65356 RepID=F0W0R2_9STRA)

HSP 1 Score: 428 bits (1101), Expect = 1.210e-137
Identity = 225/509 (44.20%), Postives = 313/509 (61.49%), Query Frame = 1
Query:   28 QCFPVINNDPPTDKDRANDAKLFEYIAANVPVMSKQEMMHRERVLTEVTQIFKRWVRETCLAKGVPEEVARAAGGIIRTSGSYRLAIHEPGSDIDAHCIAPMPCTRADFFTSLRKLLQDHPEVTNFNAIETAAVPIMTFDFDGVNIDLGLGCLPVESVSEDFNIDDDAVLKGVDSATEKCLNGPRVTNLIHRLVPNYASFLPVVRLVRVWAKRRGIYGNKMGYLGGVNFNILVAFACQLYPRASPSKLLASFFKVMHSWAWPNPIHLTRPHDAALGLQVWQA--AQNPWHVMPIITPAYPAMNSSLAVSAHSLEVMRREFRRGDAICRRVLDGGAEGASWDELVRPSEFFAMYSHYLAIDVMAGGEEEFRGWRGYMESRVRKLLDNFTYMRIPARDLHLYPRAFDRCCSG--------------GVNGELPAHCVCFFVGFNVDRARLAAGRRLDVGHAFQKFEESATGVPWLK--EGMCLALTAYSFKTLPAWTADELGGRDAARALR 1500
            Q +  I   PP   D     KL +Y+  + P  +   +  R  +L E+  IF+ WV++ C+ KGVPEE+A  AGG+I  SGSYRL ++EPG+DID  C+AP   TR DFFTSL+K+   H +VTN NAIE A VP++TFD++ +NIDL +  LP  ++ ED NI +D +L GVD+ATEK LNGPRVT L+ +L PN  SF+ V+R+VR WAKRRG+Y NKMGYLGGVN+ ILV F  QLYP A+P+ LL  FF V+ +W WP  I L +  D  LGL+VW A    N +HVMPI+TPAYP+MNSS  VS HSL VM++EF R   I + +L+ GA    WD L   S+FFA+  HYLA+DV     E+ + W  + ESR+RKL+++  Y+ +    L  +P+ F     G                  E   +  CF+VGF++DR +L + R + +  +   F+ +     W K  + M + +T   +K LP +  +E+GGR  A+++R
Sbjct:   15 QAYKAIRVTPPEPIDLEQSKKLKDYMDKHFPTENMVNITRRSLILAELRTIFRDWVKQVCIRKGVPEEIAADAGGLILVSGSYRLGVNEPGADIDTICVAPQQITREDFFTSLKKIFMQHSKVTNLNAIEGAVVPLLTFDYEEINIDLQIAILPRNTIPEDLNILNDQILVGVDAATEKSLNGPRVTELMIKLTPNRDSFISVLRIVRRWAKRRGLYSNKMGYLGGVNWCILVCFINQLYPTAAPTTLLLRFFMVLANWKWPLAIQLCKTEDVKLGLEVWNANVGNNRYHVMPILTPAYPSMNSSFNVSTHSLAVMKQEFERALKIVQEILNRGA--VEWDPLFESSDFFAVQQHYLAVDVYTTNREDEQAWCSFCESRIRKLIESLAYIPMLCH-LRAFPKRFPLSFVGQDQDEKIETPTDRNNEEKETFKYGACFYVGFDIDRRQLRS-REVSIDSSVDYFKHNDL-YRWNKRSDSMDVRITPVLWKNLPDYVFEEMGGRIVAKSIR 518          
BLAST of jgi.p|Trimin1|352228 vs. uniprot
Match: A0A5D6Y2P8_9STRA (Polynucleotide adenylyltransferase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y2P8_9STRA)

HSP 1 Score: 429 bits (1104), Expect = 3.250e-137
Identity = 237/533 (44.47%), Postives = 317/533 (59.47%), Query Frame = 1
Query:   28 QCFPVINNDPPTDKDRANDAKLFEYIAANVPVMSKQEMMHRERVLTEVTQIFKRWVRETCLAKGVPEEVARAAGGIIRTSGSYRLAIHEPGSDIDAHCIAPMPCTRADFFTSLRKLLQDHPEVTNFNAIETAAVPIMTFDFDGVNIDLGLGCLPVESVSEDFNIDDDAVLKGVDSATEKCLNGPRVTNLIHRLVPNYASFLPVVRLVRVWAKRRGIYGNKMGYLGGVNFNILVAFACQLYPRASPSKLLASFFKVMHSWAWPNPIHLTRPHDAALGLQVWQA--AQNPWHVMPIITPAYPAMNSSLAVSAHSLEVMRREFRRGDAICRRVLDGGAEGASWDELVRPSEFFAMYSHYLAIDVMAGGEEEFRGWRGYMESRVRKLLDNFTYM--------------------RIPARDLHLYPRAFDRCCSGGVNGELPA-----HCVCFFVGFNVDRARLAAGRRLDVGHAFQKFEESATGVPWLKEG--MCLALTAYSFKTLPAWTADELGGRDAARALRAALRAKDDATRKA 1539
            Q +  I   PP  KD    AKL  ++ A+ P  S   +  R  +L E+  IF+ WV++ C+ KGVPEE+A  AGG I  SGSYRL ++EPG+DID  C+AP   +R DFF+SL+++   HP+V+N  AIE A VPI+TFD++ +NIDL +  LP  +V +  NI DDAVL GVD+ATEK LNGPRVT L+ +L PN  SF+ V+R+VR WAKRRG+Y NKMGYLGGVN+ ILV F  QLYP A+PS LL  FF V+ +W WP  I L + HDA LGL+VW A    N + VMPI+TPAYP+MNSS  VS H+L VM+ E +R   I + +L+ G  GA W +L  PS+FFA++ HYLA+DV     +E + W G+ ESR+RKL+++  Y+                      PAR                     PA       VC+FVGF++DR +L  GR + + ++   F+ +     W K    M + +T   +K LP    D++GGR AAR  R     K  A  KA
Sbjct:   15 QAYKAIRTTPPEPKDLEQSAKLQAFMEASFPTESDANITRRSLILAELRSIFRAWVKQVCMQKGVPEEIAADAGGQILVSGSYRLGVNEPGADIDTICVAPRHVSRDDFFSSLKQIFLRHPKVSNLVAIEGAVVPIITFDYEEINIDLQIAILPRNAVPDTINILDDAVLLGVDTATEKSLNGPRVTELMIKLTPNRESFISVLRVVRRWAKRRGLYSNKMGYLGGVNWCILVCFINQLYPTAAPSTLLLRFFMVLANWKWPLAIQLCKTHDAKLGLEVWNANSGNNRYQVMPILTPAYPSMNSSFNVSTHTLAVMKDELKRALGIVQDILNKG--GADWSQLFEPSDFFAVHQHYLAVDVYTATADEEQAWCGFCESRIRKLVESLAYIPQLCRIRTFTKKFPLSFVEAHAPARPSSAQXXXXXXXXXXXXXXXAPAPQPTRFGVCYFVGFDIDRRQLR-GREVSIDNSVDYFKHNDL-YRWNKRTPTMDVKITPVVWKNLPECVFDDMGGRAAARIARREFMKKKKADEKA 543          
BLAST of jgi.p|Trimin1|352228 vs. uniprot
Match: A0A067BQE6_SAPPC (Poly(A) polymerase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BQE6_SAPPC)

HSP 1 Score: 426 bits (1094), Expect = 3.740e-137
Identity = 218/495 (44.04%), Postives = 310/495 (62.63%), Query Frame = 1
Query:   28 QCFPVINNDPPTDKDRANDAKLFEYIAANVPVMSKQEMMHRERVLTEVTQIFKRWVRETCLAKGVPEEVARAAGGIIRTSGSYRLAIHEPGSDIDAHCIAPMPCTRADFFTSLRKLLQDHPEVTNFNAIETAAVPIMTFDFDGVNIDLGLGCLPVESVSEDFNIDDDAVLKGVDSATEKCLNGPRVTNLIHRLVPNYASFLPVVRLVRVWAKRRGIYGNKMGYLGGVNFNILVAFACQLYPRASPSKLLASFFKVMHSWAWPNPIHLTRPHDAALGLQVWQA--AQNPWHVMPIITPAYPAMNSSLAVSAHSLEVMRREFRRGDAICRRVLDGGAEGASWDELVRPSEFFAMYSHYLAIDVMAGGEEEFRGWRGYMESRVRKLLDNFTYMRIPARDLHLYPRAFDRCCSGGVNGELPAHCVCFFVGFNVDRARLAAGRRLDVGHAFQKFEESATGVPWLK--EGMCLALTAYSFKTLPAWTADELGGRDAARALR 1500
            Q +  I   PP   D     KL  Y+  + P+  ++ +  R  +L E+  IF+ WV++ CL +G+PEE+A  AGGII  SGSYRL ++EPG+DID  C+AP   TR DFF+SL+ +L  H +VTN  AIE A VPI+TFD++ +NIDL +  L   S+ E+ N+ DD +L GVD+ TEK LNGPRVT L+ +L PN +SF+ V+R+VR WAK+RG+Y NKMGYLGGVN+ ILV F  QLYP A+PS LL  FF ++ +W WP  I L + HDA LGL+VW A    N + VMPI+TPAYP+MNSS  VS HSL VM+ EF+RG  + + ++  G  G  W  L  PS +F  + HYLAI++     E+   W GY ESR+RKL+D+  Y       L ++P+ F  C +   + E   H   +F+ F+VD+ +L   + + +  A   F+ ++    W K  +GM + +T   +K LP +  +++GG+  A+ +R
Sbjct:   14 QAYKAIRTTPPEAVDVEMSEKLQAYMDEHFPMEVEKNIQRRTIILGELRSIFRAWVKDVCLKRGLPEEIANEAGGIILVSGSYRLGVNEPGADIDTICVAPKFVTRDDFFSSLKDILLKHAKVTNLVAIEGAIVPILTFDYEEINIDLQIAILERNSIPENLNVLDDNILVGVDTPTEKSLNGPRVTELVIKLTPNRSSFIAVLRIVRRWAKKRGLYSNKMGYLGGVNWCILVCFINQLYPTAAPSTLLLRFFMILTNWKWPLAIQLCKTHDAHLGLEVWNANVGGNKYQVMPILTPAYPSMNSSYNVSVHSLSVMKEEFKRGLEVVKTIIKDG--GRDWSALFEPSPYFVDHQHYLAIEIYTSNVEDQAAWCGYAESRLRKLVDSLAYYNPQLCRLRVHPKKFPLCFASDPDDE--KHGGAYFLAFDVDKLKLRNSKEIHLNGAVDDFKMNSL-YRWPKRVDGMDVKITPVVWKNLPEFVFEDIGGKKIAKEMR 503          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352228 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZG61_9STRA0.000e+0100.00Polynucleotide adenylyltransferase n=1 Tax=Tribone... [more]
A0A6H5JKW8_9PHAE2.670e-17252.61Polynucleotide adenylyltransferase n=1 Tax=Ectocar... [more]
A0A8K1CSA9_PYTOL3.690e-14146.28Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
D0MYH7_PHYIT6.770e-14146.64Poly(A) polymerase n=12 Tax=Phytophthora TaxID=478... [more]
G4YPR7_PHYSP4.120e-14046.56Poly(A) polymerase n=7 Tax=Phytophthora TaxID=4783... [more]
A0A1V9ZUP3_9STRA1.530e-13844.24Poly(A) polymerase n=1 Tax=Achlya hypogyna TaxID=1... [more]
W4GFD2_9STRA4.610e-13845.42Poly(A) polymerase n=11 Tax=Aphanomyces astaci Tax... [more]
F0W0R2_9STRA1.210e-13744.20Poly(A) polymerase n=4 Tax=Albugo TaxID=65356 RepI... [more]
A0A5D6Y2P8_9STRA3.250e-13744.47Polynucleotide adenylyltransferase n=1 Tax=Pythium... [more]
A0A067BQE6_SAPPC3.740e-13744.04Poly(A) polymerase n=2 Tax=Saprolegnia TaxID=4769 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_113contigContig_113:17830..21747 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352228|estExt_Genemark1.C_Ctg_1130004
BRITEko00000,ko00001,ko01000,ko03019
KEGG Pathwayko03015,map03015
KEGG koko:K14376
EC2.7.7.19
DescriptionPoly(A) polymerase central domain
COG categoryA
Max annot lvl4776|Peronosporales
EggNOG OGsCOG5186@1|root,KOG2245@2759|Eukaryota,3QBI5@4776|Peronosporales
Evalue3.85e-142
Seed ortholog4787.PITG_03778T0
Hectar predicted targeting categoryother localisation
TranscriptId352550
TrackFilteredModels1
ProteinId352228
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352228gene_13160Tribonema minus UTEX_B_3156 geneContig_113 17830..21747 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13160_1exon_13160_1Tribonema minus UTEX_B_3156 exonContig_113 17830..18222 +
exon_13160_2exon_13160_2Tribonema minus UTEX_B_3156 exonContig_113 19358..20001 +
exon_13160_3exon_13160_3Tribonema minus UTEX_B_3156 exonContig_113 20706..21747 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13160CDS_13160Tribonema minus UTEX_B_3156 CDSContig_113 17830..18222 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_13160UTR3_13160Tribonema minus UTEX_B_3156 three_prime_UTRContig_113 21646..21747 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352228Trimin1|352228|estExt_Genemark1.C_Ctg_1130004Tribonema minus UTEX_B_3156 polypeptideContig_113 17830..21645 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13160 ID=mRNA_13160|Name=jgi.p|Trimin1|352228|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2079bp|location=Sequence derived from alignment at Contig_113:17830..21747+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTCTACCACTCCCAAGCCGGTGCAGTGCTTCCCTGTCATCAACAA
TGATCCACCTACAGACAAGGACAGAGCCAATGACGCCAAGCTCTTCGAGT
ACATTGCCGCCAATGTGCCCGTCATGAGCAAGCAGGAGATGATGCACCGC
GAGCGCGTGCTGACGGAAGTGACCCAGATCTTCAAGAGGTGGGTGAGGGA
GACGTGCCTGGCGAAAGGAGTGCCGGAGGAGGTGGCCCGTGCTGCTGGAG
GAATCATCAGGACCAGCGGAAGTTACAGACTGGCCATCCATGAGCCTGGC
AGCGACATCGACGCACACTGCATTGCGCCCATGCCCTGCACGCGGGCAGA
TTTCTTCACCAGCCTGCGAAAGCTGCTGCAGGATCATCCGGAGGTCACCA
ACTTCAACGCCATCGAGACCGCCGCGGTGCCCATCATGACCTTTGACTTT
GACGGCGTCAACATCGACCTCGGCCTCGGCTGCTTGCCCGTGGAGAGCGT
CTCCGAAGACTTCAACATCGATGATGACGCCGTCCTCAAAGGCGTCGACT
CGGCGACGGAGAAGTGCCTCAACGGCCCGCGCGTCACCAACCTCATCCAC
CGCCTCGTCCCCAACTACGCGTCGTTCCTCCCCGTCGTGCGCCTCGTGCG
CGTCTGGGCGAAGCGGCGCGGCATCTACGGCAACAAGATGGGGTACCTCG
GGGGCGTCAACTTCAACATCCTGGTCGCGTTCGCGTGCCAGCTGTACCCG
CGCGCGTCCCCCTCGAAGCTCCTCGCGTCCTTCTTCAAGGTGATGCACTC
GTGGGCGTGGCCGAACCCGATCCACCTCACGCGGCCGCACGACGCCGCGC
TCGGCCTCCAGGTCTGGCAGGCCGCGCAGAACCCGTGGCACGTCATGCCG
ATCATCACGCCCGCGTACCCCGCCATGAACAGCAGCCTCGCCGTCTCCGC
GCACAGCCTCGAGGTGATGCGCCGCGAGTTCCGCCGCGGCGACGCCATCT
GCCGCCGCGTGCTCGACGGCGGCGCGGAAGGCGCGAGCTGGGACGAGCTC
GTGCGGCCGAGCGAGTTCTTCGCCATGTACTCGCACTACCTCGCGATCGA
CGTCATGGCGGGCGGCGAGGAGGAGTTCCGCGGGTGGCGCGGCTACATGG
AGTCGCGCGTGCGCAAGCTGCTCGACAACTTCACGTACATGCGCATCCCC
GCGCGCGACCTCCACCTGTACCCGCGCGCATTCGACCGCTGCTGCTCTGG
AGGCGTCAACGGCGAGCTGCCCGCGCACTGCGTGTGCTTCTTTGTGGGCT
TCAACGTCGACCGCGCGCGCCTCGCAGCGGGGCGCCGCCTCGACGTCGGC
CACGCCTTTCAGAAGTTCGAGGAGTCCGCGACGGGTGTGCCGTGGCTGAA
GGAGGGCATGTGCCTCGCGCTCACGGCGTACTCCTTCAAGACGCTGCCCG
CGTGGACGGCGGACGAGCTCGGCGGCCGCGACGCCGCGCGTGCGCTGCGC
GCCGCGCTGCGCGCCAAGGACGACGCCACGCGCAAGGCGACGCTTGCCGC
GACCACCGCCGCCGCGCTCGCGCAGCGCCCGCAGCTGGCCGCAGCGGCAG
CGCCGCCGCCGCTGCCGCCGACGGCGCCGCTCGCGGCTGGCGGCAGCGGT
GGCGCAGCGGCGGCGGAAGCGGCGGTAGGCGGCGAGGGCGACCTGCTGGA
GCAGGAGTGGGAGGGGGAGGCGGAGGCGGCGGATGCGGAGTATATGGAGG
GGGAGGAGGAGGAGGGGGAGGGGGAGTACGCAAAGCTGAGCGATGCTGCA
AAGGCGGAAGCAAAGGCGGAGGCGCGGCCGCGCAAGCGCCCCGCCACCCG
CGACTTCTTTGTGCTGGAGCCGGTCGTGCCGCAGTGGCGCCGCGCGGCGC
TGGAGGCGGCGGGGCAGGCGAAGCGCGTGCGCATACAGCTGCTGCCGCCG
GCGCCGGCACAGGCGGCGTCTCGGTAGCGCGGCGGATGATAGGCTGCGCA
GCAGTGCGTACATGGAGCTAGTCTGCACAGGGGGTGAAGGACATGTCACC
CGGCGAGAATGCATACAGGTCTTCACAGC
back to top

protein sequence of jgi.p|Trimin1|352228

>Trimin1|352228|estExt_Genemark1.C_Ctg_1130004 ID=Trimin1|352228|estExt_Genemark1.C_Ctg_1130004|Name=jgi.p|Trimin1|352228|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=659bp
MASTTPKPVQCFPVINNDPPTDKDRANDAKLFEYIAANVPVMSKQEMMHR
ERVLTEVTQIFKRWVRETCLAKGVPEEVARAAGGIIRTSGSYRLAIHEPG
SDIDAHCIAPMPCTRADFFTSLRKLLQDHPEVTNFNAIETAAVPIMTFDF
DGVNIDLGLGCLPVESVSEDFNIDDDAVLKGVDSATEKCLNGPRVTNLIH
RLVPNYASFLPVVRLVRVWAKRRGIYGNKMGYLGGVNFNILVAFACQLYP
RASPSKLLASFFKVMHSWAWPNPIHLTRPHDAALGLQVWQAAQNPWHVMP
IITPAYPAMNSSLAVSAHSLEVMRREFRRGDAICRRVLDGGAEGASWDEL
VRPSEFFAMYSHYLAIDVMAGGEEEFRGWRGYMESRVRKLLDNFTYMRIP
ARDLHLYPRAFDRCCSGGVNGELPAHCVCFFVGFNVDRARLAAGRRLDVG
HAFQKFEESATGVPWLKEGMCLALTAYSFKTLPAWTADELGGRDAARALR
AALRAKDDATRKATLAATTAAALAQRPQLAAAAAPPPLPPTAPLAAGGSG
GAAAAEAAVGGEGDLLEQEWEGEAEAADAEYMEGEEEEGEGEYAKLSDAA
KAEAKAEARPRKRPATRDFFVLEPVVPQWRRAALEAAGQAKRVRIQLLPP
APAQAASR*
back to top

mRNA from alignment at Contig_113:17830..21747+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13160 ID=mRNA_13160|Name=jgi.p|Trimin1|352228|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3918bp|location=Sequence derived from alignment at Contig_113:17830..21747+ (Tribonema minus UTEX_B_3156 )
ATGGCCTCTACCACTCCCAAGCCGGTGCAGTGCTTCCCTGTCATCAACAA TGATCCACCTACAGACAAGGACAGAGCCAATGACGCCAAGCTCTTCGAGT ACATTGCCGCCAATGTGCCCGTCATGAGCAAGCAGGAGATGATGCACCGC GAGCGCGTGCTGACGGAAGTGACCCAGATCTTCAAGAGGTGGGTGAGGGA GACGTGCCTGGCGAAAGGAGTGCCGGAGGAGGTGGCCCGTGCTGCTGGAG GAATCATCAGGACCAGCGGAAGTTACAGACTGGCCATCCATGAGCCTGGC AGCGACATCGACGCACACTGCATTGCGCCCATGCCCTGCACGCGGGCAGA TTTCTTCACCAGCCTGCGAAAGCTGCTGCAGGATCATCCGGAGGTGAGCG GACAGATCGACAGTGATAACAGTTACCCGTCTTTGTTCCATACAAGTTAG AGTTTGTGTGGCGGTACAAGTTTTTTCTTGACTCGAGAGAGAATACGACA ACATTCGCACCTATGGTTGAAGTTCTGCAGGTATGTTGGCGTCAGACAGA AGGCACCTCATTCCTGTTGCACACCTTGAGAGTCAGCTGCTGCTGGCTCT TATGAGCATGCGAGAGTTATGATCCACGAGGTTTGGCACGTCAGTCGGAA GACATCCGAGTAGTATGCCGCTTCCACATCACGTCTGTCCTGTACTGCAC TCTATGAAGAAGGCTAGCGCTGGCAAAGAGCGCCTTGTTCTGTGCTCGTC GCGTACAGCAGTGTCAACAGTCGTGCGATCCAGGCATCTGGTGGGAAACG CGTTGAAGTCATGCCCTCTAAAGTGTTACAATATGCTACCTGAAGTATAA GGACTTGTGGTCGAATGATGTACTTTCGAAGTACAGTAGAAACACCACAC AGCCACCAGTGGAATTCAATAGGAGTGCATGTAGTTGTGAATGCTGACAG ATGCCCAGAGGCTGCACCAGCGCGGGCCCCAAAACCATGGCTGCGCCTGG TGAGAGTTGCCGCAGAGCCTTCAGACCCTGCAAGGACTAGTTTATGTGAC GATGGTGACAGTGCACTGCTGAGCGCCAAGCCCACTCACATGCGGTAACT TTGTACTCGGTTGGTTCTCTTTGGTCCTTGCTGACCAGACCAAGCCTATA GTATGCCTCGGCATTTTGCTGAGCTACGCTCTGCGATTCACACCAATTCT GTACTGGTCCTGATGTTATTGACGCATTAAGTCGTCCTGCAGCACAAATC ACTGGTGAACGGGAAGCAGGCCAACATTCACAGCATCACTTCCTGGGTCC ATCACTGCGTGCCATTTTTGCAAGGTTTGTTTGCGTTTAAACTTGAAGTA GAAAGCATCGCGACATCTTACTTTCAGGCGCAGAGCGCGCTTCGTGCCAG GCTTGCGGCATGCGCTGTGAGCTCCGTACAGCACATCAAATACAATGCAA ACCTACACACGTGACACACGCAATGCGCGCCCTCACCACCACCACCAACC CCTTGACAACCCCCCCCCCCCCCCCCAGGTCACCAACTTCAACGCCATCG AGACCGCCGCGGTGCCCATCATGACCTTTGACTTTGACGGCGTCAACATC GACCTCGGCCTCGGCTGCTTGCCCGTGGAGAGCGTCTCCGAAGACTTCAA CATCGATGATGACGCCGTCCTCAAAGGCGTCGACTCGGCGACGGAGAAGT GCCTCAACGGCCCGCGCGTCACCAACCTCATCCACCGCCTCGTCCCCAAC TACGCGTCGTTCCTCCCCGTCGTGCGCCTCGTGCGCGTCTGGGCGAAGCG GCGCGGCATCTACGGCAACAAGATGGGGTACCTCGGGGGCGTCAACTTCA ACATCCTGGTCGCGTTCGCGTGCCAGCTGTACCCGCGCGCGTCCCCCTCG AAGCTCCTCGCGTCCTTCTTCAAGGTGATGCACTCGTGGGCGTGGCCGAA CCCGATCCACCTCACGCGGCCGCACGACGCCGCGCTCGGCCTCCAGGTCT GGCAGGCCGCGCAGAACCCGTGGCACGTCATGCCGATCATCACGCCCGCG TACCCCGCCATGAACAGCAGCCTCGCCGTCTCCGCGCACAGCCTCGAGGT GATGCGCCGCGAGTTCCGCCGCGGCGACGCCATCTGCCGCCGCGTGCTCG ACGGCGGCGCGGAAGGCGCGAGGTGAGCCACTGATGACGCGGAGCGTCAC TTGATGCAGTGCTTTAGTTGAAGTGCGATCAATGTGTGTCTGCACAGTCG TCATGTGTGTGTGTGTGGGCGAGCGCCACGCGGGGACAGGCCGCACAGCG TACACGTTGAAGAGCGCCGGCGCATGAATGTGCGAATTCACGGAAACAGG CGCGTGTTGCTGCGCATGTTCAAGGGGGCAGTGCTCACAATGTGTGCCCG CCTGATGGGCGTGCAGGACCGCACAACACGCATGCATGCACGCGCTGTTC GCCGCGGCAGCGGCGGCGTCGATTGCAGTTTGGCGTGCTGACGGAGAGGC GACTTCACCTGTACTTCTACAACCGCTTCTTTATACATGCCATGGTCATT CACAGTATACTTAGCGCTGCAACGGCGCAGTCCCACATTGTGTGCCCTGG CCGGCCGGTACGATCACCTCTGATAGCTTTGGCGCGCGCCACACTGACGC CAGACCCAGAGTGCACATCGGCATCCCGCGCAGCGTCATCATCAGCAATC ATGCCGCTCGCGCCTCTGGTCGCTCATGACAGCAATCCGAGCACGGCTGT AACTCGTTCAACGCCGCGACGCATGACCTCGCCGTTCGTCCACTATATCC AGCCACGGCCGCACTTGACCCCCCACGCTCATAGGACATCTCGCCGCTGC CGCCGCCGCTGCTCCCCTGCGCGCAGCTGGGACGAGCTCGTGCGGCCGAG CGAGTTCTTCGCCATGTACTCGCACTACCTCGCGATCGACGTCATGGCGG GCGGCGAGGAGGAGTTCCGCGGGTGGCGCGGCTACATGGAGTCGCGCGTG CGCAAGCTGCTCGACAACTTCACGTACATGCGCATCCCCGCGCGCGACCT CCACCTGTACCCGCGCGCATTCGACCGCTGCTGCTCTGGAGGCGTCAACG GCGAGCTGCCCGCGCACTGCGTGTGCTTCTTTGTGGGCTTCAACGTCGAC CGCGCGCGCCTCGCAGCGGGGCGCCGCCTCGACGTCGGCCACGCCTTTCA GAAGTTCGAGGAGTCCGCGACGGGTGTGCCGTGGCTGAAGGAGGGCATGT GCCTCGCGCTCACGGCGTACTCCTTCAAGACGCTGCCCGCGTGGACGGCG GACGAGCTCGGCGGCCGCGACGCCGCGCGTGCGCTGCGCGCCGCGCTGCG CGCCAAGGACGACGCCACGCGCAAGGCGACGCTTGCCGCGACCACCGCCG CCGCGCTCGCGCAGCGCCCGCAGCTGGCCGCAGCGGCAGCGCCGCCGCCG CTGCCGCCGACGGCGCCGCTCGCGGCTGGCGGCAGCGGTGGCGCAGCGGC GGCGGAAGCGGCGGTAGGCGGCGAGGGCGACCTGCTGGAGCAGGAGTGGG AGGGGGAGGCGGAGGCGGCGGATGCGGAGTATATGGAGGGGGAGGAGGAG GAGGGGGAGGGGGAGTACGCAAAGCTGAGCGATGCTGCAAAGGCGGAAGC AAAGGCGGAGGCGCGGCCGCGCAAGCGCCCCGCCACCCGCGACTTCTTTG TGCTGGAGCCGGTCGTGCCGCAGTGGCGCCGCGCGGCGCTGGAGGCGGCG GGGCAGGCGAAGCGCGTGCGCATACAGCTGCTGCCGCCGGCGCCGGCACA GGCGGCGTCTCGGTAGCGCGGCGGATGATAGGCTGCGCAGCAGTGCGTAC ATGGAGCTAGTCTGCACAGGGGGTGAAGGACATGTCACCCGGCGAGAATG CATACAGGTCTTCACAGC
back to top

Coding sequence (CDS) from alignment at Contig_113:17830..21747+

>mRNA_13160 ID=mRNA_13160|Name=jgi.p|Trimin1|352228|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1977bp|location=Sequence derived from alignment at Contig_113:17830..21747+ (Tribonema minus UTEX_B_3156 )
ATGGCCTCTACCACTCCCAAGCCGGTGCAGTGCTTCCCTGTCATCAACAA
TGATCCACCTACAGACAAGGACAGAGCCAATGACGCCAAGCTCTTCGAGT
ACATTGCCGCCAATGTGCCCGTCATGAGCAAGCAGGAGATGATGCACCGC
GAGCGCGTGCTGACGGAAGTGACCCAGATCTTCAAGAGGTGGGTGAGGGA
GACGTGCCTGGCGAAAGGAGTGCCGGAGGAGGTGGCCCGTGCTGCTGGAG
GAATCATCAGGACCAGCGGAAGTTACAGACTGGCCATCCATGAGCCTGGC
AGCGACATCGACGCACACTGCATTGCGCCCATGCCCTGCACGCGGGCAGA
TTTCTTCACCAGCCTGCGAAAGCTGCTGCAGGATCATCCGGAGGTCACCA
ACTTCAACGCCATCGAGACCGCCGCGGTGCCCATCATGACCTTTGACTTT
GACGGCGTCAACATCGACCTCGGCCTCGGCTGCTTGCCCGTGGAGAGCGT
CTCCGAAGACTTCAACATCGATGATGACGCCGTCCTCAAAGGCGTCGACT
CGGCGACGGAGAAGTGCCTCAACGGCCCGCGCGTCACCAACCTCATCCAC
CGCCTCGTCCCCAACTACGCGTCGTTCCTCCCCGTCGTGCGCCTCGTGCG
CGTCTGGGCGAAGCGGCGCGGCATCTACGGCAACAAGATGGGGTACCTCG
GGGGCGTCAACTTCAACATCCTGGTCGCGTTCGCGTGCCAGCTGTACCCG
CGCGCGTCCCCCTCGAAGCTCCTCGCGTCCTTCTTCAAGGTGATGCACTC
GTGGGCGTGGCCGAACCCGATCCACCTCACGCGGCCGCACGACGCCGCGC
TCGGCCTCCAGGTCTGGCAGGCCGCGCAGAACCCGTGGCACGTCATGCCG
ATCATCACGCCCGCGTACCCCGCCATGAACAGCAGCCTCGCCGTCTCCGC
GCACAGCCTCGAGGTGATGCGCCGCGAGTTCCGCCGCGGCGACGCCATCT
GCCGCCGCGTGCTCGACGGCGGCGCGGAAGGCGCGAGCTGGGACGAGCTC
GTGCGGCCGAGCGAGTTCTTCGCCATGTACTCGCACTACCTCGCGATCGA
CGTCATGGCGGGCGGCGAGGAGGAGTTCCGCGGGTGGCGCGGCTACATGG
AGTCGCGCGTGCGCAAGCTGCTCGACAACTTCACGTACATGCGCATCCCC
GCGCGCGACCTCCACCTGTACCCGCGCGCATTCGACCGCTGCTGCTCTGG
AGGCGTCAACGGCGAGCTGCCCGCGCACTGCGTGTGCTTCTTTGTGGGCT
TCAACGTCGACCGCGCGCGCCTCGCAGCGGGGCGCCGCCTCGACGTCGGC
CACGCCTTTCAGAAGTTCGAGGAGTCCGCGACGGGTGTGCCGTGGCTGAA
GGAGGGCATGTGCCTCGCGCTCACGGCGTACTCCTTCAAGACGCTGCCCG
CGTGGACGGCGGACGAGCTCGGCGGCCGCGACGCCGCGCGTGCGCTGCGC
GCCGCGCTGCGCGCCAAGGACGACGCCACGCGCAAGGCGACGCTTGCCGC
GACCACCGCCGCCGCGCTCGCGCAGCGCCCGCAGCTGGCCGCAGCGGCAG
CGCCGCCGCCGCTGCCGCCGACGGCGCCGCTCGCGGCTGGCGGCAGCGGT
GGCGCAGCGGCGGCGGAAGCGGCGGTAGGCGGCGAGGGCGACCTGCTGGA
GCAGGAGTGGGAGGGGGAGGCGGAGGCGGCGGATGCGGAGTATATGGAGG
GGGAGGAGGAGGAGGGGGAGGGGGAGTACGCAAAGCTGAGCGATGCTGCA
AAGGCGGAAGCAAAGGCGGAGGCGCGGCCGCGCAAGCGCCCCGCCACCCG
CGACTTCTTTGTGCTGGAGCCGGTCGTGCCGCAGTGGCGCCGCGCGGCGC
TGGAGGCGGCGGGGCAGGCGAAGCGCGTGCGCATACAGCTGCTGCCGCCG
GCGCCGGCACAGGCGGCGTCTCGGTAG
back to top