mRNA_13159 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|174374
Unique NamemRNA_13159
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|174374 vs. uniprot
Match: A0A835ZD72_9STRA (Farnesyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD72_9STRA)

HSP 1 Score: 574 bits (1480), Expect = 1.130e-206
Identity = 299/299 (100.00%), Postives = 299/299 (100.00%), Query Frame = 1
Query:    1 MLPLLLSRRYLYSKKVVVDQALEASIMPVGPQNQKICESMKYSLMAGGKRVRPILCIAACEMFGGTDEDAMPTAVALEMIHSMSLIHDDLPAMDNDDLRRGKPTNHVVYGEAMAILAGDALLSKSFEHVAKFTKGVPAERVVEVLRRLGEAVGELGLAGGQAMDLELEGRDDTTLEDLRWIHRHKTGALLNVAVCAGAILGGASPKDVAAMETFSDAIGLAFQVADDILDCTQTTEQLGKTAGKDEAVSKTTYVKLMGMDGARAEARRLVDAALGALEPYGERAAALRALAMFIIEREN 897
            MLPLLLSRRYLYSKKVVVDQALEASIMPVGPQNQKICESMKYSLMAGGKRVRPILCIAACEMFGGTDEDAMPTAVALEMIHSMSLIHDDLPAMDNDDLRRGKPTNHVVYGEAMAILAGDALLSKSFEHVAKFTKGVPAERVVEVLRRLGEAVGELGLAGGQAMDLELEGRDDTTLEDLRWIHRHKTGALLNVAVCAGAILGGASPKDVAAMETFSDAIGLAFQVADDILDCTQTTEQLGKTAGKDEAVSKTTYVKLMGMDGARAEARRLVDAALGALEPYGERAAALRALAMFIIEREN
Sbjct:    1 MLPLLLSRRYLYSKKVVVDQALEASIMPVGPQNQKICESMKYSLMAGGKRVRPILCIAACEMFGGTDEDAMPTAVALEMIHSMSLIHDDLPAMDNDDLRRGKPTNHVVYGEAMAILAGDALLSKSFEHVAKFTKGVPAERVVEVLRRLGEAVGELGLAGGQAMDLELEGRDDTTLEDLRWIHRHKTGALLNVAVCAGAILGGASPKDVAAMETFSDAIGLAFQVADDILDCTQTTEQLGKTAGKDEAVSKTTYVKLMGMDGARAEARRLVDAALGALEPYGERAAALRALAMFIIEREN 299          
BLAST of jgi.p|Trimin1|174374 vs. uniprot
Match: H6WB80_VAULI (Farnesyltransferase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB80_VAULI)

HSP 1 Score: 453 bits (1166), Expect = 4.590e-158
Identity = 228/292 (78.08%), Postives = 260/292 (89.04%), Query Frame = 1
Query:   22 RRYLYSKKVVVDQALEASIMPVGPQNQKICESMKYSLMAGGKRVRPILCIAACEMFGGTDEDAMPTAVALEMIHSMSLIHDDLPAMDNDDLRRGKPTNHVVYGEAMAILAGDALLSKSFEHVAKFTKGVPAERVVEVLRRLGEAVGELGLAGGQAMDLELEGRDDTTLEDLRWIHRHKTGALLNVAVCAGAILGGASPKDVAAMETFSDAIGLAFQVADDILDCTQTTEQLGKTAGKDEAVSKTTYVKLMGMDGARAEARRLVDAALGALEPYGERAAALRALAMFIIEREN 897
            ++YLY KKV+VD+AL   I+P+G +N+K+CESM YSL+AGGKRVRPILCIA+ E+FGG  E  +PTA+ALEMIHSMSL+HDDLPAMDNDDLRRGKPTNHVVYGEA+AILAGDALLSKSFE VAK TKGV AERVV+VL RLGE VGE+GLAGGQAMDLELEG++DTTLE LRWIH+HKTGALL  A   GA+LGGA P +V A+E FS++IGLAFQVADDILDCTQT+EQLGKTAGKDEAVSKTTYVKL+GMDGAR EA+RLVD AL ALEP+G RA AL+A+A FIIEREN
Sbjct:   58 KKYLYEKKVIVDKALSECIVPIGAENEKLCESMNYSLLAGGKRVRPILCIASSEIFGGEIESTLPTALALEMIHSMSLVHDDLPAMDNDDLRRGKPTNHVVYGEALAILAGDALLSKSFEIVAKHTKGVDAERVVDVLARLGECVGEVGLAGGQAMDLELEGKEDTTLEQLRWIHKHKTGALLKAACTTGAVLGGAEPSEVEAIERFSESIGLAFQVADDILDCTQTSEQLGKTAGKDEAVSKTTYVKLLGMDGARKEAKRLVDDALAALEPFGSRAEALKAIAHFIIEREN 349          
BLAST of jgi.p|Trimin1|174374 vs. uniprot
Match: A0A6U5JU78_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5JU78_9STRA)

HSP 1 Score: 397 bits (1019), Expect = 7.240e-136
Identity = 204/291 (70.10%), Postives = 242/291 (83.16%), Query Frame = 1
Query:   28 YLYSKKVVVDQALEASIMPVGPQNQKICESMKYSLMAGGKRVRPILCIAACEMFGGTDEDAMPTAVALEMIHSMSLIHDDLPAMDNDDLRRGKPTNHVVYGEAMAILAGDALLSKSFEHVAKFT-KGVPAERVVEVLRRLGEAVGELGLAGGQAMDLELEGRDDTTLEDLRWIHRHKTGALLNVAVCAGAILGGASPKDVAAMETFSDAIGLAFQVADDILDCTQTTEQLGKTAGKDEAVSKTTYVKLMGMDGARAEARRLVDAALGALEPYGERAAALRALAMFIIEREN 897
            YL  K  V++QAL+ASI+   PQ +KICESM+YSLMAGGKR+RP LC+AAC MFGG+D+DAMPTAVALEMIH+MSLIHDDLP+MD+DDLRRGKPTNHV+YGE +AILAGDA+LS SFEHVA+ T K VPAER ++VL RLG+ VG +GLAGGQ MDLE E ++  TLEDL WIH HKT ALL VAV AGAILGGASP++V   E F+  IGLAFQVADDILD T  ++ LGKTAGKDEA  KTTYVKLMG++G++ EARRL+D A   LEP+GERAA L A+A FI++R+N
Sbjct:   49 YLKEKIGVIEQALDASIVSTVPQTEKICESMRYSLMAGGKRIRPALCLAACNMFGGSDDDAMPTAVALEMIHTMSLIHDDLPSMDDDDLRRGKPTNHVLYGEDVAILAGDAMLSTSFEHVARHTPKSVPAERTLDVLVRLGKCVGPVGLAGGQVMDLECEAKEGVTLEDLTWIHTHKTAALLQVAVSAGAILGGASPEEVERCEKFALDIGLAFQVADDILDVTADSQTLGKTAGKDEATDKTTYVKLMGLEGSKKEARRLIDEAKECLEPFGERAAPLLAIADFIVDRKN 339          
BLAST of jgi.p|Trimin1|174374 vs. uniprot
Match: B8BXV9_THAPS (Geranylgeranyl pyrophosphate synthetase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BXV9_THAPS)

HSP 1 Score: 384 bits (987), Expect = 5.270e-131
Identity = 197/290 (67.93%), Postives = 240/290 (82.76%), Query Frame = 1
Query:   28 YLYSKKVVVDQALEASIMPVGPQNQKICESMKYSLMAGGKRVRPILCIAACEMFGGTDEDAMPTAVALEMIHSMSLIHDDLPAMDNDDLRRGKPTNHVVYGEAMAILAGDALLSKSFEHVAKFTKGVPAERVVEVLRRLGEAVGELGLAGGQAMDLELEGRDDTTLEDLRWIHRHKTGALLNVAVCAGAILGGASPKDVAAMETFSDAIGLAFQVADDILDCTQTTEQLGKTAGKDEAVSKTTYVKLMGMDGARAEARRLVDAALGALEPYGERAAALRALAMFIIEREN 897
            YL SK   ++ ALEAS+    PQ  KICESM YSLMAGGKR+RP+LCIAACEMFGG+ + AMPTAVALEMIH+MSLIHDDLP+MDNDDLRRGKPTNHVV+GE +AILAGD+LLS SFEHVA+ TKGV AE++V+V+ RLG++VG  GLAGGQ MDLE E +  TTL+DL+WIH HKT  LL VAV +GA+LGGA+P++VAA E F+  IGLAFQVADDILD T ++E LGKTAGKDEA  KTTY KL+G++ ++A AR+L+D A  +L P+G+RAA L A+A FII+R+N
Sbjct:   50 YLASKIGPIESALEASVKSRIPQTDKICESMAYSLMAGGKRIRPVLCIAACEMFGGSQDVAMPTAVALEMIHTMSLIHDDLPSMDNDDLRRGKPTNHVVFGEDVAILAGDSLLSTSFEHVARETKGVSAEKIVDVIARLGKSVGAEGLAGGQVMDLECEAKPGTTLDDLKWIHIHKTATLLQVAVASGAVLGGATPEEVAACELFAMNIGLAFQVADDILDVTASSEDLGKTAGKDEATDKTTYPKLLGLEESKAYARQLIDEAKESLAPFGDRAAPLLAIADFIIDRKN 339          
BLAST of jgi.p|Trimin1|174374 vs. uniprot
Match: A0A7S3Q3N6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q3N6_9STRA)

HSP 1 Score: 381 bits (978), Expect = 1.360e-129
Identity = 194/291 (66.67%), Postives = 236/291 (81.10%), Query Frame = 1
Query:   25 RYLYSKKVVVDQALEASIMPVGPQNQKICESMKYSLMAGGKRVRPILCIAACEMFGGTDEDAMPTAVALEMIHSMSLIHDDLPAMDNDDLRRGKPTNHVVYGEAMAILAGDALLSKSFEHVAKFTKGVPAERVVEVLRRLGEAVGELGLAGGQAMDLELEGRDDTTLEDLRWIHRHKTGALLNVAVCAGAILGGASPKDVAAMETFSDAIGLAFQVADDILDCTQTTEQLGKTAGKDEAVSKTTYVKLMGMDGARAEARRLVDAALGALEPYGERAAALRALAMFIIEREN 897
            +YL SKK  ++ +L+AS+    PQ  KICESM YSLMAGGKR+RP+LCIAACEMFGG+ E AMPTAVALEMIH+MSLIHDDLP+MDNDDLRRGKPTNH++YGE +AILAGDALLS SF+HVA+ TKGV A+R+++V+ RLG++VG +GLAGGQ MDLE EG+   TLEDL WIH HKT  LL VAV +GAILGGAS ++V A E F+  IGLAFQVADDILD T +TE LGKTA KD    KTT+ KL+G++ ++ EARRL+D A  +LEP+G +AA L A+A +IIER N
Sbjct:   52 KYLLSKKDDIEASLKASVKSTTPQTDKICESMDYSLMAGGKRIRPVLCIAACEMFGGSQEAAMPTAVALEMIHTMSLIHDDLPSMDNDDLRRGKPTNHIIYGEDVAILAGDALLSTSFQHVAEETKGVSADRLLDVIIRLGKSVGPIGLAGGQVMDLECEGKQGVTLEDLTWIHTHKTATLLQVAVASGAILGGASKEEVQACEKFALNIGLAFQVADDILDVTASTEDLGKTAAKDLDADKTTFPKLLGLEESKVEARRLIDEAKDSLEPFGAKAAPLLAIADYIIERSN 342          
BLAST of jgi.p|Trimin1|174374 vs. uniprot
Match: A0A7S2RH45_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RH45_9STRA)

HSP 1 Score: 379 bits (974), Expect = 5.320e-129
Identity = 192/292 (65.75%), Postives = 239/292 (81.85%), Query Frame = 1
Query:   22 RRYLYSKKVVVDQALEASIMPVGPQNQKICESMKYSLMAGGKRVRPILCIAACEMFGGTDEDAMPTAVALEMIHSMSLIHDDLPAMDNDDLRRGKPTNHVVYGEAMAILAGDALLSKSFEHVAKFTKGVPAERVVEVLRRLGEAVGELGLAGGQAMDLELEGRDDTTLEDLRWIHRHKTGALLNVAVCAGAILGGASPKDVAAMETFSDAIGLAFQVADDILDCTQTTEQLGKTAGKDEAVSKTTYVKLMGMDGARAEARRLVDAALGALEPYGERAAALRALAMFIIEREN 897
            + YL  K   VD+AL+ S++   P+ +KI ESM+YSL+AGGKRVRPI+CIAACEM GGT E AMPTAVA+EMIH+MSL+HDDLP+MDNDDLRRGKPTNHV++GE +AILAGDALLS +FEH AK+TKGV  +R+V+V+ RLG+AVG +GLAGGQ MDLE EG++  TL++LRWIH HKT ALL V+V  GAIL GA+ ++V A ET++  +GLAFQVADDILD TQ+TE+LGKTAGKD    KTTY KLMG+DG+RAEA+RLV+ A   L P+GERAA L  +A +II R++
Sbjct:   50 KSYLAEKAEAVDKALDESLVATCPEVEKITESMRYSLLAGGKRVRPIMCIAACEMLGGTQEMAMPTAVAIEMIHTMSLVHDDLPSMDNDDLRRGKPTNHVLFGEDIAILAGDALLSTAFEHCAKYTKGVSPDRLVDVIGRLGKAVGPVGLAGGQVMDLECEGKEGVTLDELRWIHTHKTAALLQVSVATGAILAGATDEEVKACETYALDVGLAFQVADDILDVTQSTEELGKTAGKDLDADKTTYPKLMGLDGSRAEAKRLVEEANACLTPFGERAAPLLGIADYIISRKS 341          
BLAST of jgi.p|Trimin1|174374 vs. uniprot
Match: A0A3G5BBY1_HASOS (Trans-prenyltransferase 5 n=1 Tax=Haslea ostrearia TaxID=67476 RepID=A0A3G5BBY1_HASOS)

HSP 1 Score: 374 bits (960), Expect = 6.200e-127
Identity = 193/292 (66.10%), Postives = 239/292 (81.85%), Query Frame = 1
Query:   28 YLYSKKVVVDQALEASIMPVGPQNQKICESMKYSLMAGGKRVRPILCIAACEMFGGTDEDAMPTAVALEMIHSMSLIHDDLPAMDNDDLRRGKPTNHVVYGEAMAILAGDALLSKSFEHVAKFTKGVPAERVVEVLRRLGEAVGELGLAGGQAMDLELEGR--DDTTLEDLRWIHRHKTGALLNVAVCAGAILGGASPKDVAAMETFSDAIGLAFQVADDILDCTQTTEQLGKTAGKDEAVSKTTYVKLMGMDGARAEARRLVDAALGALEPYGERAAALRALAMFIIEREN 897
            Y+  K   + +AL+ SI+ + PQ  KICESM YSLMAGGKR+RP+LC+AACEMF G+DE AMP+AVA+EMIH+MSLIHDDLP+MDNDDLRRGKPTNHVVYGE +AILAGDALLS SF+ VA+ TKGV  ERV++V+ RLG++VG  GLAGGQAMDLE EG+  D+ +L+DLRWIH HKT ALL V+V AGAI+GGA+P++V A E ++  IGLAFQVADDILD TQ++E+LGKTAGKD    K TY +L+G+DGAR EA+RL+  +  ALEP+G+RA  L ALA +II R+N
Sbjct:   46 YIVEKNGPITKALQESIVSLEPQTAKICESMLYSLMAGGKRIRPVLCLAACEMFAGSDEKAMPSAVAVEMIHTMSLIHDDLPSMDNDDLRRGKPTNHVVYGEEVAILAGDALLSDSFKFVAENTKGVDPERVLDVVVRLGKSVGPKGLAGGQAMDLECEGKPVDEVSLDDLRWIHTHKTAALLQVSVAAGAIIGGATPEEVEACEKYALNIGLAFQVADDILDITQSSEELGKTAGKDLEADKATYPRLLGLDGAREEAQRLIAESKKALEPFGDRAIPLLALADYIINRKN 337          
BLAST of jgi.p|Trimin1|174374 vs. uniprot
Match: A0A7S4QC60_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QC60_9STRA)

HSP 1 Score: 372 bits (956), Expect = 1.190e-125
Identity = 197/297 (66.33%), Postives = 237/297 (79.80%), Query Frame = 1
Query:   28 YLYSKKVVVDQALEASIMPVGPQNQKICESMKYSLMAGGKRVRPILCIAACEMFG--GTDE---DAMPTAVALEMIHSMSLIHDDLPAMDNDDLRRGKPTNHVVYGEAMAILAGDALLSKSFEHVAKFTKGVPAERVVEVLRRLGEAVGELGLAGGQAMDLELEGR--DDTTLEDLRWIHRHKTGALLNVAVCAGAILGGASPKDVAAMETFSDAIGLAFQVADDILDCTQTTEQLGKTAGKDEAVSKTTYVKLMGMDGARAEARRLVDAALGALEPYGERAAALRALAMFIIEREN 897
            Y+ SK   ++ ALEAS+    P+  KICESM YSLMAGGKR+RP+LCIAACEMF   G +E    AMPTAVALEMIH+MSLIHDDLP+MDNDDLRRGKPTNHVVYGE +AILAGDALLS SF+HVA+ T+ V  +R+++V+ RLG++VG +GLAGGQ MDLE EG+  D+ TL+DLRWIH HKT  LL VAV +GAILGGA+P++VAA E +S  IGLAFQVADDILD T +TE LGKTAGKDE   K TY +L+G++GA+AEA+RL D A   L P+GERAA L ALA +II R+N
Sbjct:   87 YIASKLGAIEAALEASVKSTTPETDKICESMGYSLMAGGKRIRPVLCIAACEMFDKDGKEEAEKKAMPTAVALEMIHTMSLIHDDLPSMDNDDLRRGKPTNHVVYGEDVAILAGDALLSTSFQHVAENTENVSNDRILDVIIRLGKSVGPVGLAGGQVMDLECEGKPVDEVTLDDLRWIHTHKTATLLQVAVASGAILGGATPEEVAACEKYSLNIGLAFQVADDILDVTASTEDLGKTAGKDEDTDKATYPRLLGLEGAKAEAQRLTDEAKACLAPFGERAAPLNALADYIINRKN 383          
BLAST of jgi.p|Trimin1|174374 vs. uniprot
Match: A0A7S3YD71_9EUKA (Hypothetical protein n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YD71_9EUKA)

HSP 1 Score: 372 bits (955), Expect = 1.530e-125
Identity = 193/291 (66.32%), Postives = 237/291 (81.44%), Query Frame = 1
Query:   28 YLYSKKVVVDQALEASIMPVGPQNQKICESMKYSLMAGGKRVRPILCIAACEMFGGTDEDAMPTAVALEMIHSMSLIHDDLPAMDNDDLRRGKPTNHVVYGEAMAILAGDALLSKSFEHVAKFT-KGVPAERVVEVLRRLGEAVGELGLAGGQAMDLELEGRDDTTLEDLRWIHRHKTGALLNVAVCAGAILGGASPKDVAAMETFSDAIGLAFQVADDILDCTQTTEQLGKTAGKDEAVSKTTYVKLMGMDGARAEARRLVDAALGALEPYGERAAALRALAMFIIEREN 897
            +L  KK  V++AL+AS+     +  KIC++M+YSL+AGGKRVRP LCIAACEM GGT+E  MP+AVALEMIH+MSLIHDDLPAMDNDDLRRG PT+HV YGE +AILAGDALLS+SF HVAK T K V  ER+VEV+R LG++VG +GLAGGQ MDLE E + D T E+L+WIHRHKTGALL  AV +GA+L GA+  +V A   +++ IGLAFQVADDILD TQT+E LGKTAGKDEAV KTTYVKL+G++GA+AEA++L D A+ ALEP+GE+A  L+ALA FI+ R +
Sbjct:   90 FLIEKKKSVEKALDASVQSNCKETGKICDAMRYSLLAGGKRVRPALCIAACEMLGGTEEMCMPSAVALEMIHTMSLIHDDLPAMDNDDLRRGMPTSHVKYGEDIAILAGDALLSESFAHVAKNTPKSVAPERIVEVIRILGDSVGPVGLAGGQVMDLECEAKKDVTTEELQWIHRHKTGALLIAAVASGAVLAGATQAEVDACIEYAEKIGLAFQVADDILDATQTSEVLGKTAGKDEAVDKTTYVKLLGLEGAKAEAQKLRDEAVAALEPFGEKAGPLKALADFIVNRNS 380          
BLAST of jgi.p|Trimin1|174374 vs. uniprot
Match: F0Y0W2_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0W2_AURAN)

HSP 1 Score: 371 bits (952), Expect = 1.690e-125
Identity = 189/294 (64.29%), Postives = 230/294 (78.23%), Query Frame = 1
Query:   22 RRYLYSKKVVVDQALEASIMPVGPQNQKICESMKYSLMAGGKRVRPILCIAACEMFGGTDEDAMPTAVALEMIHSMSLIHDDLPAMDNDDLRRGKPTNHVVYGEAMAILAGDALLSKSFEH--VAKFTKGVPAERVVEVLRRLGEAVGELGLAGGQAMDLELEGRDDTTLEDLRWIHRHKTGALLNVAVCAGAILGGASPKDVAAMETFSDAIGLAFQVADDILDCTQTTEQLGKTAGKDEAVSKTTYVKLMGMDGARAEARRLVDAALGALEPYGERAAALRALAMFIIEREN 897
            + Y   K   V++AL+ S+    P+ + I ESM+YSL+AGGKRVRP++CIAACEMFGGT+  AMPTAVA+EMIH+MSLIHDDLPAMDNDDLRRG PTNHV+YG+ +AILAGDALLS SFEH  V    +G+PAER+VE +RRLGEAVG +GLAGGQ MDLE E +   +LE+L WIH HKT  LL V+V AGA+L GA+  DV   ET+++ IG+AFQVADDILD T T+E LGKTAGKDE   KTTY KLMG+DGARAEA RL   A+ +L PYGE+A  L A+A +I+ER+N
Sbjct:   59 KAYFAQKVAAVEKALDESLTCTTPETKIIVESMRYSLLAGGKRVRPVMCIAACEMFGGTEAMAMPTAVAIEMIHTMSLIHDDLPAMDNDDLRRGMPTNHVIYGDDVAILAGDALLSTSFEHCAVGSTAEGIPAERIVETIRRLGEAVGAVGLAGGQVMDLECEAKSGVSLEELTWIHTHKTAKLLEVSVAAGAVLAGAAKDDVRQCETYANDIGIAFQVADDILDVTATSEMLGKTAGKDEDTDKTTYPKLMGLDGARAEADRLYSEAIDSLAPYGEKAVPLIAIAKYIVERQN 352          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174374 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZD72_9STRA1.130e-206100.00Farnesyltransferase n=1 Tax=Tribonema minus TaxID=... [more]
H6WB80_VAULI4.590e-15878.08Farnesyltransferase n=1 Tax=Vaucheria litorea TaxI... [more]
A0A6U5JU78_9STRA7.240e-13670.10Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
B8BXV9_THAPS5.270e-13167.93Geranylgeranyl pyrophosphate synthetase n=1 Tax=Th... [more]
A0A7S3Q3N6_9STRA1.360e-12966.67Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2RH45_9STRA5.320e-12965.75Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A3G5BBY1_HASOS6.200e-12766.10Trans-prenyltransferase 5 n=1 Tax=Haslea ostrearia... [more]
A0A7S4QC60_9STRA1.190e-12566.33Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S3YD71_9EUKA1.530e-12566.32Hypothetical protein n=2 Tax=Lotharella globosa Ta... [more]
F0Y0W2_AURAN1.690e-12564.29Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_113contigContig_113:12860..17052 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|174374|e_gw1.113.77.1
BRITEko00000,ko00001,ko00002,ko01000,ko01006
KEGG rclassRC00279
KEGG ReactionR01658,R02003,R02061
KEGG ModuleM00364,M00366
KEGG Pathwayko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130
KEGG koko:K13789
EC2.5.1.1,2.5.1.10,2.5.1.29
DescriptionBelongs to the FPP GGPP synthase family
COG categoryH
Max annot lvl2836|Bacillariophyta
EggNOG OGsCOG0142@1|root,KOG0776@2759|Eukaryota,2XBKT@2836|Bacillariophyta
Evalue8.63e-132
Seed ortholog35128.Thaps268480
Hectar predicted targeting categoryother localisation
TranscriptId174696
TrackFilteredModels1
ProteinId174374
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174374gene_13159Tribonema minus UTEX_B_3156 geneContig_113 12860..17052 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174374Trimin1|174374|e_gw1.113.77.1Tribonema minus UTEX_B_3156 polypeptideContig_113 12860..17052 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13159_4exon_13159_4Tribonema minus UTEX_B_3156 exonContig_113 12860..13186 -
exon_13159_3exon_13159_3Tribonema minus UTEX_B_3156 exonContig_113 14900..15069 -
exon_13159_2exon_13159_2Tribonema minus UTEX_B_3156 exonContig_113 16334..16631 -
exon_13159_1exon_13159_1Tribonema minus UTEX_B_3156 exonContig_113 16948..17052 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13159CDS_13159Tribonema minus UTEX_B_3156 CDSContig_113 16948..17052 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13159 ID=mRNA_13159|Name=jgi.p|Trimin1|174374|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=900bp|location=Sequence derived from alignment at Contig_113:12860..17052- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCCGCTGCTGCTTTCCCGCAGGTACCTTTACTCGAAGAAGGTTGT
CGTTGACCAGGCTCTGGAGGCCAGCATCATGCCAGTTGGGCCTCAGAATC
AGAAGATCTGCGAGTCCATGAAGTACTCGCTCATGGCGGGCGGCAAGCGC
GTGCGCCCGATCCTCTGCATCGCGGCGTGCGAGATGTTCGGCGGGACGGA
CGAGGACGCCATGCCTACGGCGGTCGCGCTGGAGATGATCCACTCTATGT
CGCTCATCCACGACGACCTGCCCGCGATGGACAACGACGACCTGCGGCGC
GGCAAGCCCACCAACCACGTCGTGTACGGCGAGGCGATGGCCATCCTCGC
GGGCGACGCGCTGCTGTCCAAGTCGTTCGAGCACGTCGCCAAGTTCACCA
AGGGCGTGCCGGCGGAGCGCGTAGTTGAAGTTCTGCGGCGCCTCGGCGAG
GCGGTGGGGGAGCTGGGGCTCGCGGGGGGGCAGGCCATGGACCTGGAGCT
TGAGGGCCGCGATGACACCACGCTGGAGGACCTGAGGTGGATCCACAGGC
ACAAGACGGGCGCGCTGCTCAACGTGGCGGTGTGCGCCGGCGCCATCCTC
GGCGGCGCGTCCCCCAAGGACGTGGCCGCGATGGAGACGTTCAGCGACGC
AATCGGGCTCGCCTTCCAGGTCGCGGACGACATCCTCGACTGCACGCAGA
CGACGGAGCAGCTCGGCAAGACGGCCGGCAAGGACGAGGCCGTCTCCAAG
ACGACGTACGTCAAGCTCATGGGCATGGACGGCGCGCGCGCGGAGGCGCG
GCGGCTCGTCGACGCCGCGCTGGGGGCGCTCGAGCCGTACGGCGAGCGCG
CCGCGGCGCTGCGCGCGCTGGCCATGTTCATCATCGAGCGCGAGAACTAG
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protein sequence of jgi.p|Trimin1|174374

>Trimin1|174374|e_gw1.113.77.1 ID=Trimin1|174374|e_gw1.113.77.1|Name=jgi.p|Trimin1|174374|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=300bp
MLPLLLSRRYLYSKKVVVDQALEASIMPVGPQNQKICESMKYSLMAGGKR
VRPILCIAACEMFGGTDEDAMPTAVALEMIHSMSLIHDDLPAMDNDDLRR
GKPTNHVVYGEAMAILAGDALLSKSFEHVAKFTKGVPAERVVEVLRRLGE
AVGELGLAGGQAMDLELEGRDDTTLEDLRWIHRHKTGALLNVAVCAGAIL
GGASPKDVAAMETFSDAIGLAFQVADDILDCTQTTEQLGKTAGKDEAVSK
TTYVKLMGMDGARAEARRLVDAALGALEPYGERAAALRALAMFIIEREN*
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mRNA from alignment at Contig_113:12860..17052-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13159 ID=mRNA_13159|Name=jgi.p|Trimin1|174374|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4193bp|location=Sequence derived from alignment at Contig_113:12860..17052- (Tribonema minus UTEX_B_3156 )
ATGCTGCCGCTGCTGCTTTCCCGCAGGTACCTTTACTCGAAGAAGGTTGT CGTTGACCAGGCTCTGGAGGCCAGCATCATGCCAGTTGGGCCTCAGAATC AGAAGGTACGTTCATTTGCAGCTACTGAGTGCGTGTACATTCCGCTGGCA ACCACACCTGCTACCGATTGAGGTAAACGATGAAAGTGCCAATAGTTGAG TTTTGAATGTTGCAGCTCGCGTACCCCGCATACCCACTTCTTTCAGCAAG TTCTCATCACGCAGGCAGATGCCATGCTGTGCCCTCTGCAACAGTGCCAT CAAAAGCATGCGCAGTCCGAGCACGCACACACAAACGCACACACAAACTG ACACACGGCGGCGCTAACCCACCAGCCCCCCCCCCCCCCCCCACACACAC ACCGCGCGCACACACGCACAGATCTGCGAGTCCATGAAGTACTCGCTCAT GGCGGGCGGCAAGCGCGTGCGCCCGATCCTCTGCATCGCGGCGTGCGAGA TGTTCGGCGGGACGGACGAGGACGCCATGCCTACGGCGGTCGCGCTGGAG ATGATCCACTCTATGTCGCTCATCCACGACGACCTGCCCGCGATGGACAA CGACGACCTGCGGCGCGGCAAGCCCACCAACCACGTCGTGTACGGCGAGG CGATGGCCATCCTCGCGGGCGACGCGCTGCTGTCCAAGTCGTTCGAGCAC GTCGCCAAGTTCACCAAGGGTGAGTCGGCAGCGGCGGCGCGTGTGTGCGA AATGACTGCTTTGTGGTTGAAATTGAAGTTTTCAGCTCATCCAGCACTAG GCTGCCTCAGGTCCAAGTAGCTGATTCTGTCCTGCCTCGTGGATGAGAGA GCATGGCTTGGCTGTTGAGCCAGCCAGGCGTACGCCAGTTACGCAGCTCA TGATGGTAGTGCAGCGCAGAATCGTAGCTCTGTCTGTGTTTGAGTCACAA TGACAAGAGTAGTCTGACAGGGCACGCATGGTAGCACGCGTGGGAGTAAC ATTGCCAATAAGGTTGAGACACCGGCGCTGGCAGCATCGCGGTCAACAAG GAGGCACAGCACCTTCAAATATTACTTCAAATCTGAAGTAATGAAGGTTG GTGACAAGCAGCTTGTCGCAGACCGTGCAGTCGTAAGCTTTGCAGTTAGC TGCTTGGGTCATCGCTAGACTACTACGCCCGCCATGATCCCATGTGCGTG TGAATTCCCATGTGGCACGGCTGGAGTGCACCTGGACGCCAGAGAAGCGC ACAACACACCGAAATACACAGCATGTCAAAGTCGACTATGTGGCTTGAAT ACCAGGCCATGTTGAAGTACATGTCGACAGACGACGAATTGAACTACACG CCGCAACCAACAATGCGGGTGACAATGGCACCACAGTGTGTGTCGATCGG CAATTGCTACATGGCAGCGCCGGCGGCGGCGCTGAAGATCAATTGCAAAC AATTGTCATGTTGCACGTTTGCGGCGTAGCGCAATGCCGAGTGTTATGGC GCGCAGCGCCGTCTGCCGAGTGCGATGGCGTGCGCTCTGTTGCTCAGGTG GCCTGGTTGTGGGCTAACGCTAACCCTAAGCGCCGGACATGCACGCAAGA CAGTGATCGAGCGGCACTTGAACTGTGCCGACGAGAAGTTGGCAAACCGC ATCAGCAAGATTGCCCTGAACATATCCGCTAGCTCAATACATCTGCAATC ATCTTTCAACTCAAAATCACCGAGTTTGATTGAAACCAGAGTTGCGCTCC GCACCTTGATGCAGATGACCCCTTGCGGAGCGCCTCACACGGCATTCATT TATAGAACAAGACCTTGAACGACACAACATGCTATCACAATCTACGCCTC ACGTATGCTTCAACATCATGTGCGCCTTTCAAGTTTACCACTTCACAAGA TCCGCATCTTCTTCACGCCCCACAAGGTCGCCTTGCCGAACCTCACCTTT TCTCCGCCTCTTCTTGCATGGGAGCGTCACCAGGCGTGCCGGCGGAGCGC GTAGTTGAAGTTCTGCGGCGCCTCGGCGAGGCGGTGGGGGAGCTGGGGCT CGCGGGGGGGCAGGCCATGGACCTGGAGCTTGAGGGCCGCGATGACACCA CGCTGGAGGACCTGAGGTGGATCCACAGGCACAAGACGGGCGCGCTGCTC AACGTGAGTAGTGCCGGTCATTTGAAGTAGTGAAGCTTCTGTTGTTAAAG CTGTTGTGGATTGGCCGCGACGACACCACGCTGGAGGACCTGAGGTGGAT GCGCAGGCTCAGGGCGGGCGCGCTGCTGAACGCGAATAGCGCCGGCAGCA TGTTGAAGTGGTGCAGCAACAAAGAGTAAGTTCCACGAATGCAGGTCATG ATGATACTGGAGGGGACCCGAGGTGGGTTCACAGGCACTGGACTTGCTGC TGAACGTGAGAAGAGCCGGCAGCGCCAGGGGCATGTTAAGTGGTTTGGCC AAAAACATAGTTGTTGAAGTTGTGGATACGCATGTCACGAGGAGAGCGTG ATTCACAGGCCACAAAGCGGGCGCGCTGCTGGACGTGAGTGGCAGCTAGT GACTGGTTGTACTCGCCCCCAGTGTTGCTATTGAGGTACCACGGTATGAA CCTCGTGTTGAAGTTATGCATGCATGTGAAGCGATGGCACCGCGCTGAAA GACCTCAGGCGGCTTCATGAGCACAAGCTGGGCGAACGGCTGTGCCTATG CTAGCGCCAGTAGGGGGCAGCGCTGCGCCTCGGCCGCTGCTTCCCGAAAG CTGTAGGTCCCTGAACAAGTACTTTCTTGAAGCAGTGAGACGCAGGACGT ATCTCATCTACGAGCGTTTCTGTCTCTTCAAGTCGTGGGTGAACTTGAGA CCGCGACGGCACCGTATTTGACAACTGCCAAAGTGCCTCGACTAAGGGCG CACGTTAGGGTTGCGGTTACGGTTAGGGTTTGCATGCTACCGCTGGACTT CAAGTAGGGAAAGCATGAATGCGCTGGCGCACTGCACTGCTTCTGCAAGA TGCGCAGCAGGCGCAGGCGTGCTCTGCGCGCTTCTGTGCTGACGTGAAAT GCACACAAGCAGAGGCTGAGGCGCGCAGCGTGCTTCATGTCGATGACTGC GGTCGAGAGCGTGTGCTTCAACTTCAAGTGTGCAGTTCATGCGGATGCAA GTGTCGGAAAATGCTGTTGGCCGGTTGAGCTCGATCCTAGTGTCAGCAAC AGATGCTCTCTGCGGTGTGGCCTTGATGCTCATGCCTTCAACACAGGCGA TGCACCAGTCTTCCTGAGTGCAGTGCGCAGGTGTGCTGCTTTACGTAGTT GCAGTTGAAGAATGGCTGCCTCAGCCCTTTCCTCCAACCAATTCGAGGGT CTCGCCAGCGTGACTTGATACGACCAACCGCAACATGGATGTCCGCAGCA ACTGACTCTTGCGCGTACACCAGCCCCCCCCTCCCCCCCCCCCTCCCCCC CTGCCCCCCCGGCACGTGCCGCGCTGTGGTTGCAATGATCAAGACTGACG TTCTTCTGACTGCCGCCGCCCCCCTTTCCTCCCCGCACGCCGCGCTGCGC GCCAATGCCAGGTGTTCATGTGCATAGTCTTGTGTGCCTAATCCAGCTCA CATGGTTGCTACATATGTACCCACAATGACTGATGCCCCCTCGCCACGTG GCGGTCTGCGCCACTGCCAGGTGTCCTTGTGCATAGTCCAGCTCGCATGG TCACTACTCACAACGACTGAATGCCCCCCCCCCCTCCCCCTTCGCATCTC AAGCTGTCAACTCACAACAACCGATAACCCCCCCCTCCCCTTCGAGGCCC AAACTGCCACTACTCACAATTACCGATACCCCCCCCCCCCCCCCCCCCCG GCCGCCCCCCTTTCAGGTGGCGGTGTGCGCCGGCGCCATCCTCGGCGGCG CGTCCCCCAAGGACGTGGCCGCGATGGAGACGTTCAGCGACGCAATCGGG CTCGCCTTCCAGGTCGCGGACGACATCCTCGACTGCACGCAGACGACGGA GCAGCTCGGCAAGACGGCCGGCAAGGACGAGGCCGTCTCCAAGACGACGT ACGTCAAGCTCATGGGCATGGACGGCGCGCGCGCGGAGGCGCGGCGGCTC GTCGACGCCGCGCTGGGGGCGCTCGAGCCGTACGGCGAGCGCGCCGCGGC GCTGCGCGCGCTGGCCATGTTCATCATCGAGCGCGAGAACTAG
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Coding sequence (CDS) from alignment at Contig_113:12860..17052-

>mRNA_13159 ID=mRNA_13159|Name=jgi.p|Trimin1|174374|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=900bp|location=Sequence derived from alignment at Contig_113:12860..17052- (Tribonema minus UTEX_B_3156 )
ATGCTGCCGCTGCTGCTTTCCCGCAGGTACCTTTACTCGAAGAAGGTTGT
CGTTGACCAGGCTCTGGAGGCCAGCATCATGCCAGTTGGGCCTCAGAATC
AGAAGATCTGCGAGTCCATGAAGTACTCGCTCATGGCGGGCGGCAAGCGC
GTGCGCCCGATCCTCTGCATCGCGGCGTGCGAGATGTTCGGCGGGACGGA
CGAGGACGCCATGCCTACGGCGGTCGCGCTGGAGATGATCCACTCTATGT
CGCTCATCCACGACGACCTGCCCGCGATGGACAACGACGACCTGCGGCGC
GGCAAGCCCACCAACCACGTCGTGTACGGCGAGGCGATGGCCATCCTCGC
GGGCGACGCGCTGCTGTCCAAGTCGTTCGAGCACGTCGCCAAGTTCACCA
AGGGCGTGCCGGCGGAGCGCGTAGTTGAAGTTCTGCGGCGCCTCGGCGAG
GCGGTGGGGGAGCTGGGGCTCGCGGGGGGGCAGGCCATGGACCTGGAGCT
TGAGGGCCGCGATGACACCACGCTGGAGGACCTGAGGTGGATCCACAGGC
ACAAGACGGGCGCGCTGCTCAACGTGGCGGTGTGCGCCGGCGCCATCCTC
GGCGGCGCGTCCCCCAAGGACGTGGCCGCGATGGAGACGTTCAGCGACGC
AATCGGGCTCGCCTTCCAGGTCGCGGACGACATCCTCGACTGCACGCAGA
CGACGGAGCAGCTCGGCAAGACGGCCGGCAAGGACGAGGCCGTCTCCAAG
ACGACGTACGTCAAGCTCATGGGCATGGACGGCGCGCGCGCGGAGGCGCG
GCGGCTCGTCGACGCCGCGCTGGGGGCGCTCGAGCCGTACGGCGAGCGCG
CCGCGGCGCTGCGCGCGCTGGCCATGTTCATCATCGAGCGCGAGAACTAG
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