mRNA_13158 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352226
Unique NamemRNA_13158
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|352226 vs. uniprot
Match: A0A835ZHW1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHW1_9STRA)

HSP 1 Score: 428 bits (1100), Expect = 1.300e-148
Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 1 
Query:    1 MAATAAVAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTILRWAVWRKRSSGFTTVVEACGPTTTTSTAVKLAETKECGGFYGSLAARCTEAEAAVVALVPSTAVVTPRAPVLALKAKAIWDELVRPSEVFAMYSHHLAIDVMAGGEEEFRGWRGYMEPPVRKLLDHFTYMRIPARDLHLGSATAAAAFDGAARGWRRXXXXXXXXXXXXXXXXEGELLEQEWEGEAEAADAARDFFVLEPVVPQWRRTALEAAGQAKRVRIQLLPPAPAQAAAR 825
            MAATAAVAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTILRWAVWRKRSSGFTTVVEACGPTTTTSTAVKLAETKECGGFYGSLAARCTEAEAAVVALVPSTAVVTPRAPVLALKAKAIWDELVRPSEVFAMYSHHLAIDVMAGGEEEFRGWRGYMEPPVRKLLDHFTYMRIPARDLHLGSATAAAAFDGAARGWRRXXXXXXXXXXXXXXXXEGELLEQEWEGEAEAADAARDFFVLEPVVPQWRRTALEAAGQAKRVRIQLLPPAPAQAAAR
Sbjct:    1 MAATAAVAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTILRWAVWRKRSSGFTTVVEACGPTTTTSTAVKLAETKECGGFYGSLAARCTEAEAAVVALVPSTAVVTPRAPVLALKAKAIWDELVRPSEVFAMYSHHLAIDVMAGGEEEFRGWRGYMEPPVRKLLDHFTYMRIPARDLHLGSATAAAAFDGAARGWRRXXXXXXXXXXXXXXXXEGELLEQEWEGEAEAADAARDFFVLEPVVPQWRRTALEAAGQAKRVRIQLLPPAPAQAAAR 275
[Close]
BLAST of jgi.p|Trimin1|352226 vs. uniprot
Match: A0A835ZG61_9STRA (Polynucleotide adenylyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG61_9STRA)

HSP 1 Score: 148 bits (373), Expect = 3.050e-36
Identity = 127/314 (40.45%), Postives = 133/314 (42.36%), Query Frame = 1 
Query:  355 AIWDELVRPSEVFAMYSHHLAIDVMAGGEEEFRGWRGYMEPPVRKLLDHFTYMRIPARDLHL------------------------------------------------------------------------------------GSATAAAAFDGAARG-------------------------------------WRRXXXXXXXXXXXXXXXXEGELLEQEWEGE--------------------AEAADAA----------------RDFFVLEPVVPQWRRTALEAAGQAKRVRIQLLPPAPAQAAAR 825
            A WDELVRPSE FAMYSH+LAIDVMAGGEEEFRGWRGYME  VRKLLD+FTYMRIPARDLHL                                                                                    G   AA A   A R                                         XXXXXXXXXX      EG+LLEQEWEGE                    A+ +DAA                RDFFVLEPVVPQWRR ALEAAGQAKRVRIQLLPPAPAQAA+R
Sbjct:  345 ASWDELVRPSEFFAMYSHYLAIDVMAGGEEEFRGWRGYMESRVRKLLDNFTYMRIPARDLHLYPRAFDRCCSGGVNGELPAHCVCFFVGFNVDRARLAAGRRLDVGHAFQKFEESATGVPWLKEGMCLALTAYSFKTLPAWTADELGGRDAARALRAALRAKDDATRKATLAXXXXXXLAQRPQLAXXXXXXXXXXXXXXXXXXXXXXXXXEAAVGGEGDLLEQEWEGEXXXXXXXXXXXXXXXXXXXYAKLSDAAKAEXXXXXXXXKRPATRDFFVLEPVVPQWRRAALEAAGQAKRVRIQLLPPAPAQAASR 658
[Close]
BLAST of jgi.p|Trimin1|352226 vs. uniprot
Match: A0A836CBM7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBM7_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 2.620e-20
Identity = 74/136 (54.41%), Postives = 75/136 (55.15%), Query Frame = 1 
Query:  427 MAGGEEEFRGWRGYMEPPVRKLLDHFTYMRIPARDLHLGSATAAAAFDGAARGWRRXXXXXXXXXXXXXXXXEGELLEQEWEGEAEAADAA------------RDFFVLEPVVPQWRRTALEAAGQAKRVRIQLLP 798
            MAGGEEEFRGWRGYMEP                                          XXXXXXXXXXXX       +EWEGEAEAADAA            RDFFVLEPVVPQWRRTALEAAGQAKRVRIQLLP
Sbjct:    1 MAGGEEEFRGWRGYMEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------XXXXXXXXXXXXARASCWSREWEGEAEAADAAQGGSAARNCAPRRDFFVLEPVVPQWRRTALEAAGQAKRVRIQLLP 125
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352226 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835ZHW1_9STRA1.300e-148100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZG61_9STRA3.050e-3640.45Polynucleotide adenylyltransferase n=1 Tax=Tribone... [more]
A0A836CBM7_9STRA2.620e-2054.41Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_113contigContig_113:9526..11414 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352226|estExt_Genemark1.C_Ctg_1130002
DescriptionPoly(A) polymerase. Source PGD
COG categoryA
Max annot lvl121069|Pythiales
EggNOG OGsCOG5186@1|root,KOG2245@2759|Eukaryota,1MA9M@121069|Pythiales
Evalue8.1e-06
Seed ortholog36331.EPrPI00000015599
Hectar predicted targeting categorysignal peptide
TranscriptId352548
TrackFilteredModels1
ProteinId352226
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352226gene_13158Tribonema minus UTEX_B_3156 geneContig_113 9526..11414 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352226Trimin1|352226|estExt_Genemark1.C_Ctg_1130002Tribonema minus UTEX_B_3156 polypeptideContig_113 9697..11414 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13158_7exon_13158_7Tribonema minus UTEX_B_3156 exonContig_113 9526..9826 -
exon_13158_6exon_13158_6Tribonema minus UTEX_B_3156 exonContig_113 9918..10076 -
exon_13158_5exon_13158_5Tribonema minus UTEX_B_3156 exonContig_113 10219..10398 -
exon_13158_4exon_13158_4Tribonema minus UTEX_B_3156 exonContig_113 10724..10819 -
exon_13158_3exon_13158_3Tribonema minus UTEX_B_3156 exonContig_113 10970..11080 -
exon_13158_2exon_13158_2Tribonema minus UTEX_B_3156 exonContig_113 11180..11214 -
exon_13158_1exon_13158_1Tribonema minus UTEX_B_3156 exonContig_113 11298..11414 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_13158UTR3_13158Tribonema minus UTEX_B_3156 three_prime_UTRContig_113 9526..9696 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13158CDS_13158Tribonema minus UTEX_B_3156 CDSContig_113 11298..11414 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13158 ID=mRNA_13158|Name=jgi.p|Trimin1|352226|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=999bp|location=Sequence derived from alignment at Contig_113:9526..11414- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGCGACGGCGGCAGTAGCCCCGGCCGCGGCAGCAGCCGCTGCACG
CGCCGCCGCCGGCAAAGCAGTCACCACGACCGTGATGAGCGCGGTGGCAG
CGGCAGCCGCGGCGACGATCCTGCGATGGGCCGTGTGGCGCAAGCGATCA
TCCGGCTTCACCACGGTTGTCGAGGCCTGCGGCCCCACCACCACTACCTC
CACCGCGGTGAAGCTCGCCGAGACTAAGGAGTGCGGAGGGTTCTACGGAT
CACTTGCTGCACGCTGCACAGAGGCGGAGGCTGCGGTGGTGGCGCTGGTG
CCCTCGACGGCCGTGGTGACGCCCAGGGCGCCGGTGTTGGCCTTGAAGGC
GAAGGCGATCTGGGACGAGCTCGTGCGGCCGAGCGAGGTCTTTGCCATGT
ACTCGCACCACCTCGCGATAGACGTCATGGCGGGCGGCGAGGAGGAGTTC
CGCGGGTGGCGTGGCTACATGGAGCCGCCCGTGCGCAAGCTGCTCGACCA
CTTCACGTACATGCGCATCCCTGCGCGCGACCTCCACCTCGGCAGCGCCA
CCGCCGCCGCTGCCTTCGACGGCGCCGCCCGTGGCTGGCGGCGGCGGCGC
CACTGCGCCGCTGCGGCGGAAGCGGCAGCGGCGGGCGGCGGCGAGGGCGA
GCTGCTGGAGCAGGAGTGGGAGGGGGAGGCGGAGGCGGCAGATGCAGCCC
GCGACTTCTTTGTGCTGGAGCCGGTCGTGCCGCAGTGGCGCCGCACGGCG
CTGGAGGCGGCGGGGCAGGCGAAGCGCGTGCGCATACAGCTGCTGCCGCC
GGCGCCAGCGCAGGCGGCGGCTCGGTAGCGCAGCGGTCGATATTCGCGCC
GCAGTGCGTACATGGCGCTAGTCTGCGCAGAGCTTTAAGGACATAGCACC
TGGCGAGAATGCATACAAGTCTTCACAGCTCTCGTCGTCCATGTTCGTAT
CAATTGTATGTGCTTTGTCAGCCATCGCTGGTCCATCTGCTACCGCGTT
back to top

protein sequence of jgi.p|Trimin1|352226

>Trimin1|352226|estExt_Genemark1.C_Ctg_1130002 ID=Trimin1|352226|estExt_Genemark1.C_Ctg_1130002|Name=jgi.p|Trimin1|352226|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=276bp
MAATAAVAPAAAAAAARAAAGKAVTTTVMSAVAAAAAATILRWAVWRKRS
SGFTTVVEACGPTTTTSTAVKLAETKECGGFYGSLAARCTEAEAAVVALV
PSTAVVTPRAPVLALKAKAIWDELVRPSEVFAMYSHHLAIDVMAGGEEEF
RGWRGYMEPPVRKLLDHFTYMRIPARDLHLGSATAAAAFDGAARGWRRRR
HCAAAAEAAAAGGGEGELLEQEWEGEAEAADAARDFFVLEPVVPQWRRTA
LEAAGQAKRVRIQLLPPAPAQAAAR*
back to top

mRNA from alignment at Contig_113:9526..11414-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13158 ID=mRNA_13158|Name=jgi.p|Trimin1|352226|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1889bp|location=Sequence derived from alignment at Contig_113:9526..11414- (Tribonema minus UTEX_B_3156 )
ATGGCGGCGACGGCGGCAGTAGCCCCGGCCGCGGCAGCAGCCGCTGCACG
CGCCGCCGCCGGCAAAGCAGTCACCACGACCGTGATGAGCGCGGTGGCAG
CGGCAGCCGCGGCGACGGTGCCCAGAAGGGTCTTGTTTCCACATCACCTC
CTTTCTCATGTGCACCTTTGGGAATCACGCACTGCTGCAATAGCGGAGAG
ATCCTGCGATGGGCCGTGTGGCGCAAGCGATCATCGTACCGACGGTCGTC
ATCCTTCTGGCGAACTTCGCCAACTGTTGGTCAACTTGGCCACACATCGC
CTTCGTGTTCAAGGCCGTCACCGCTGCTCCTTAGCGGCTTCACCACGGTT
GTCGAGGCCTGCGGCCCCACCACCACTACCTCCACCGCGGTGAAGCTCGC
CGAGACTAAGGAGTGCGGAGGGTTCTACGGATCACTTGCTGCACGGTCCC
CAAGTCACGCGGTTGTATGTCGGACACGCCATCTTCTTCACCTTAAAACA
TGTCATTGATTCGGTCGTGTGACTGCACCGCGTTACCTGAGCATGGTGTG
GCAAGTGGTCCAATGGAAGCCCCCACACTCCTTGGTGTCTATCAGCTGCA
CAGAGGCGGAGGCTGCGGTGGTGGCGCTGGTGCCCTCGACGGCCGTGGTG
ACGCCCAGGGCGCCGGTGTTGGCCTTGAAGGCGAAGGCGATGTGTGGCCA
AGTTGACCAACGGATGGCGAAGATCGCCAGAAGAATGGCGATCGTCTGTG
CGCTTGCGCCAGACGGCGCATCGCAGGAAACACATATTTGAACACGCTTG
TATGACGGCTTGTGACTGGCATAGGAACAGGCATCGGTCCTGCCTAGGGC
TGTGCCCAGCGTGGCTGTGGAGCAGGGCGCAATGATTCCGACGCTCGTCA
CCTGCATGCTGGCGTTTGATGAGAGCTGCACAAGTGCTATCCATGCATCC
GCATATGACTGCCCCCCGTGCTCGTAGGACAGCCGCTTGCCGCCGCCGCT
GCTGACCTGCGCGCAGCTGGGACGAGCTCGTGCGGCCGAGCGAGGTCTTT
GCCATGTACTCGCACCACCTCGCGATAGACGTCATGGCGGGCGGCGAGGA
GGAGTTCCGCGGGTGGCGTGGCTACATGGAGCCGCCCGTGCGCAAGCTGC
TCGACCACTTCACGTACATGCGCATCCCTGCGCGCGACCTCCACCTGTAC
CCGCGCGTTTGAGCGGTGCTGCTCCGGCGGCGTCAACGGCGGGCTGCCCA
CGCACTGCCGAGGACGACTCCACCCGCAAGGCCGCGCTCGCCGCGATCAC
CGCCGCCGCGCTTGTGCAGCGCCCGCAGCTGGCCGCAGCGGCAGCGCCAC
CGCCGCCGCTGCCTTCGACGGCGCCGCCCGTGGCTGGCGGCGGCGGCGCC
ACTGCGCCGCTGCGGCGGAAGCGGCAGCGGCGGGCGGCGGCGAGGGCGAG
CTGCTGGAGCAGGAGTGGGAGGGGGAGGCGGAGGCGGCAGATGCAGCGTA
CAAAGGGGGGAGGGGGGGTACTCTAAGCTGAGTGATGCTGCAAAGGCGGA
GACAAGGCGGAAGCGCGGCCGCGCAATTGCCCCGCCAGCCGCGACTTCTT
TGTGCTGGAGCCGGTCGTGCCGCAGTGGCGCCGCACGGCGCTGGAGGCGG
CGGGGCAGGCGAAGCGCGTGCGCATACAGCTGCTGCCGCCGGCGCCAGCG
CAGGCGGCGGCTCGGTAGCGCAGCGGTCGATATTCGCGCCGCAGTGCGTA
CATGGCGCTAGTCTGCGCAGAGCTTTAAGGACATAGCACCTGGCGAGAAT
GCATACAAGTCTTCACAGCTCTCGTCGTCCATGTTCGTATCAATTGTATG
TGCTTTGTCAGCCATCGCTGGTCCATCTGCTACCGCGTT
back to top

Coding sequence (CDS) from alignment at Contig_113:9526..11414-

>mRNA_13158 ID=mRNA_13158|Name=jgi.p|Trimin1|352226|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=828bp|location=Sequence derived from alignment at Contig_113:9526..11414- (Tribonema minus UTEX_B_3156 )
ATGGCGGCGACGGCGGCAGTAGCCCCGGCCGCGGCAGCAGCCGCTGCACG
CGCCGCCGCCGGCAAAGCAGTCACCACGACCGTGATGAGCGCGGTGGCAG
CGGCAGCCGCGGCGACGATCCTGCGATGGGCCGTGTGGCGCAAGCGATCA
TCCGGCTTCACCACGGTTGTCGAGGCCTGCGGCCCCACCACCACTACCTC
CACCGCGGTGAAGCTCGCCGAGACTAAGGAGTGCGGAGGGTTCTACGGAT
CACTTGCTGCACGCTGCACAGAGGCGGAGGCTGCGGTGGTGGCGCTGGTG
CCCTCGACGGCCGTGGTGACGCCCAGGGCGCCGGTGTTGGCCTTGAAGGC
GAAGGCGATCTGGGACGAGCTCGTGCGGCCGAGCGAGGTCTTTGCCATGT
ACTCGCACCACCTCGCGATAGACGTCATGGCGGGCGGCGAGGAGGAGTTC
CGCGGGTGGCGTGGCTACATGGAGCCGCCCGTGCGCAAGCTGCTCGACCA
CTTCACGTACATGCGCATCCCTGCGCGCGACCTCCACCTCGGCAGCGCCA
CCGCCGCCGCTGCCTTCGACGGCGCCGCCCGTGGCTGGCGGCGGCGGCGC
CACTGCGCCGCTGCGGCGGAAGCGGCAGCGGCGGGCGGCGGCGAGGGCGA
GCTGCTGGAGCAGGAGTGGGAGGGGGAGGCGGAGGCGGCAGATGCAGCCC
GCGACTTCTTTGTGCTGGAGCCGGTCGTGCCGCAGTGGCGCCGCACGGCG
CTGGAGGCGGCGGGGCAGGCGAAGCGCGTGCGCATACAGCTGCTGCCGCC
GGCGCCAGCGCAGGCGGCGGCTCGGTAG
back to top