mRNA_13138 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|136613
Unique NamemRNA_13138
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|136613 vs. uniprot
Match: A0A835Z659_9STRA (C2H2-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z659_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.960e-29
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 
Query:    1 SGLEGAVNELLANYEAKSAERIPYYCRVCKFQGASVEDLAAHRQTQLHTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKERLELVMRK 279
            SGLEGAVNELLANYEAKSAERIPYYCRVCKFQGASVEDLAAHRQTQLHTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKERLELVMRK
Sbjct:    1 SGLEGAVNELLANYEAKSAERIPYYCRVCKFQGASVEDLAAHRQTQLHTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKERLELVMRK 93
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BLAST of jgi.p|Trimin1|136613 vs. uniprot
Match: A0A6H5KMP8_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMP8_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 8.260e-13
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    4 GLEGAVNELLANYEAKSAERIPYYCRVCKFQGASVEDLAAHRQTQLH 144
            GL+ AV ELLANYEA+S+ER+P+YCRVCKFQG S+E L  H++  LH
Sbjct:  178 GLDSAVKELLANYEARSSERVPFYCRVCKFQGDSLEALEKHKEEPLH 224
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BLAST of jgi.p|Trimin1|136613 vs. uniprot
Match: D7FWN0_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWN0_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 8.300e-13
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    4 GLEGAVNELLANYEAKSAERIPYYCRVCKFQGASVEDLAAHRQTQLH 144
            GL+ AV ELLANYEA+S+ER+P+YCRVCKFQG S+E L  H++  LH
Sbjct:  180 GLDSAVKELLANYEARSSERVPFYCRVCKFQGDSLEALEKHKEEPLH 226
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BLAST of jgi.p|Trimin1|136613 vs. uniprot
Match: I2CRP9_NANGC (C2h2 zinc finger protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRP9_NANGC)

HSP 1 Score: 64.3 bits (155), Expect = 1.530e-11
Identity = 27/48 (56.25%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 SGLEGAVNELLANYEAKSAERIPYYCRVCKFQGASVEDLAAHRQTQLH 144
            +GL   V ELL+NY+  S+ER P+YCR+C+FQG S+EDLA H++ +LH
Sbjct:    1 AGLAQTVAELLSNYQPASSERRPFYCRICRFQGQSLEDLAHHKKGELH 48
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BLAST of jgi.p|Trimin1|136613 vs. uniprot
Match: W7TIZ9_9STRA (C2h2 zinc finger n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIZ9_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 4.810e-11
Identity = 27/48 (56.25%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 SGLEGAVNELLANYEAKSAERIPYYCRVCKFQGASVEDLAAHRQTQLH 144
            +GL   V ELL+NY+  S+ER P+YCR+C+FQG S+EDLA H++ +LH
Sbjct:   32 AGLAQTVAELLSNYQPASSERRPFYCRICRFQGQSLEDLAHHKKGELH 79
[Close]
BLAST of jgi.p|Trimin1|136613 vs. uniprot
Match: A0A4D9D0V7_9STRA (C2H2-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D0V7_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 3.290e-10
Identity = 27/48 (56.25%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 SGLEGAVNELLANYEAKSAERIPYYCRVCKFQGASVEDLAAHRQTQLH 144
            +GL   V ELL+NY+  S+ER P+YCR+C+FQG S+EDLA H++ +LH
Sbjct:  167 AGLAQTVAELLSNYQPASSERRPFYCRICRFQGQSLEDLAHHKKGELH 214
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|136613 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835Z659_9STRA1.960e-29100.00C2H2-type domain-containing protein (Fragment) n=1... [more]
A0A6H5KMP8_9PHAE8.260e-1365.96C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FWN0_ECTSI8.300e-1365.96C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
I2CRP9_NANGC1.530e-1156.25C2h2 zinc finger protein (Fragment) n=1 Tax=Nannoc... [more]
W7TIZ9_9STRA4.810e-1156.25C2h2 zinc finger n=1 Tax=Nannochloropsis gaditana ... [more]
A0A4D9D0V7_9STRA3.290e-1056.25C2H2-type domain-containing protein n=1 Tax=Nannoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_161contigContig_161:248992..249270 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|136613|gw1.161.17.1
DescriptionZinc-finger double-stranded RNA-binding
COG categoryA
Max annot lvl2836|Bacillariophyta
EggNOG OGs2C7FU@1|root,2RRAS@2759|Eukaryota,2XCKR@2836|Bacillariophyta
Evalue1.75e-08
Seed ortholog2850.Phatr32507
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionC2H2 zinc finger protein
Ec32 orthologEc-06_001270.1
TranscriptId136935
TrackFilteredModels1
ProteinId136613
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136613gene_13138Tribonema minus UTEX_B_3156 geneContig_161 248992..249270 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13138_1exon_13138_1Tribonema minus UTEX_B_3156 exonContig_161 248992..249270 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13138CDS_13138Tribonema minus UTEX_B_3156 CDSContig_161 248992..249270 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136613Trimin1|136613|gw1.161.17.1Tribonema minus UTEX_B_3156 polypeptideContig_161 248992..249270 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13138 ID=mRNA_13138|Name=jgi.p|Trimin1|136613|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=279bp|location=Sequence derived from alignment at Contig_161:248992..249270- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGCGGCCTAGAAGGAGCAGTCAACGAGCTGCTGGCCAACTACGAGGCCAA
GTCAGCAGAGCGCATACCCTACTACTGCCGCGTGTGCAAGTTCCAGGGCG
CCAGCGTCGAGGACCTGGCGGCTCACCGGCAGACGCAGCTGCACACGGAG
GCCAGCACGCGCGAACGGCGGGTCTCCTTCTGCAAACTCTGCCGCAAGCA
GTTCACGTCGCCGCCGCAGCTGCGTGAGCACGTGCAAGGGCGCGCTCACA
AGGAACGCCTTGAGCTTGTGATGCGCAAG
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protein sequence of jgi.p|Trimin1|136613

>Trimin1|136613|gw1.161.17.1 ID=Trimin1|136613|gw1.161.17.1|Name=jgi.p|Trimin1|136613|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=93bp
SGLEGAVNELLANYEAKSAERIPYYCRVCKFQGASVEDLAAHRQTQLHTE
ASTRERRVSFCKLCRKQFTSPPQLREHVQGRAHKERLELVMRK
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mRNA from alignment at Contig_161:248992..249270-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13138 ID=mRNA_13138|Name=jgi.p|Trimin1|136613|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=279bp|location=Sequence derived from alignment at Contig_161:248992..249270- (Tribonema minus UTEX_B_3156 )
AGCGGCCTAGAAGGAGCAGTCAACGAGCTGCTGGCCAACTACGAGGCCAA
GTCAGCAGAGCGCATACCCTACTACTGCCGCGTGTGCAAGTTCCAGGGCG
CCAGCGTCGAGGACCTGGCGGCTCACCGGCAGACGCAGCTGCACACGGAG
GCCAGCACGCGCGAACGGCGGGTCTCCTTCTGCAAACTCTGCCGCAAGCA
GTTCACGTCGCCGCCGCAGCTGCGTGAGCACGTGCAAGGGCGCGCTCACA
AGGAACGCCTTGAGCTTGTGATGCGCAAG
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Coding sequence (CDS) from alignment at Contig_161:248992..249270-

>mRNA_13138 ID=mRNA_13138|Name=jgi.p|Trimin1|136613|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=279bp|location=Sequence derived from alignment at Contig_161:248992..249270- (Tribonema minus UTEX_B_3156 )
AGCGGCCTAGAAGGAGCAGTCAACGAGCTGCTGGCCAACTACGAGGCCAA
GTCAGCAGAGCGCATACCCTACTACTGCCGCGTGTGCAAGTTCCAGGGCG
CCAGCGTCGAGGACCTGGCGGCTCACCGGCAGACGCAGCTGCACACGGAG
GCCAGCACGCGCGAACGGCGGGTCTCCTTCTGCAAACTCTGCCGCAAGCA
GTTCACGTCGCCGCCGCAGCTGCGTGAGCACGTGCAAGGGCGCGCTCACA
AGGAACGCCTTGAGCTTGTGATGCGCAAG
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