mRNA_13120 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|177954
Unique NamemRNA_13120
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|177954 vs. uniprot
Match: A0A835Z811_9STRA (RNA_pol_sigma70 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z811_9STRA)

HSP 1 Score: 667 bits (1720), Expect = 7.870e-241
Identity = 371/371 (100.00%), Postives = 371/371 (100.00%), Query Frame = 1 
Query:    1 MSVATSSAEAPRXXXXXXXXXXXXGRKPKAEFSEPSAASQPNAEFFAQLRSTRLLSAEEELRLGALVQELVAAEARCAALAEALGREPTLAERAADAGAASEALYTARLRRGLWAKRAMVTCNLRLVVALAAKFQGQGPPLADLIQEGAVGLVRAAEKYDPARGFRFSTYATWWVRQRLHLSVRSHRLVRVPLRVHSQFEALRRAVRALAGELGRRPTEGELAARCGLTPARAAHVRAAMLPPESLDRELHFASHRSEQGLVTMLDVTPAAADDGTSAGTATMEQALEWDLLREDLERAMRASLSQRERDIVRMRVGLDDGRAKTATELAAVFQLPAYVILREERNALTKLRVAPDTLRLRDYAELIDALS 1113
            MSVATSSAEAPRXXXXXXXXXXXXGRKPKAEFSEPSAASQPNAEFFAQLRSTRLLSAEEELRLGALVQELVAAEARCAALAEALGREPTLAERAADAGAASEALYTARLRRGLWAKRAMVTCNLRLVVALAAKFQGQGPPLADLIQEGAVGLVRAAEKYDPARGFRFSTYATWWVRQRLHLSVRSHRLVRVPLRVHSQFEALRRAVRALAGELGRRPTEGELAARCGLTPARAAHVRAAMLPPESLDRELHFASHRSEQGLVTMLDVTPAAADDGTSAGTATMEQALEWDLLREDLERAMRASLSQRERDIVRMRVGLDDGRAKTATELAAVFQLPAYVILREERNALTKLRVAPDTLRLRDYAELIDALS
Sbjct:    1 MSVATSSAEAPRXXXXXXXXXXXXGRKPKAEFSEPSAASQPNAEFFAQLRSTRLLSAEEELRLGALVQELVAAEARCAALAEALGREPTLAERAADAGAASEALYTARLRRGLWAKRAMVTCNLRLVVALAAKFQGQGPPLADLIQEGAVGLVRAAEKYDPARGFRFSTYATWWVRQRLHLSVRSHRLVRVPLRVHSQFEALRRAVRALAGELGRRPTEGELAARCGLTPARAAHVRAAMLPPESLDRELHFASHRSEQGLVTMLDVTPAAADDGTSAGTATMEQALEWDLLREDLERAMRASLSQRERDIVRMRVGLDDGRAKTATELAAVFQLPAYVILREERNALTKLRVAPDTLRLRDYAELIDALS 371
[Close]
BLAST of jgi.p|Trimin1|177954 vs. uniprot
Match: A0A835ZGR1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGR1_9STRA)

HSP 1 Score: 263 bits (671), Expect = 9.250e-80
Identity = 173/341 (50.73%), Postives = 203/341 (59.53%), Query Frame = 1 
Query:  112 ASQPNA---EFFAQLRSTRLLSAEEELRLGALVQELVAAEARCAALAEALGREPTLAERAADAGAASEALYTARLRRGLWAKRAMVTCNLRLVVALAAKFQGQ--------GPPLADLIQEGAVGLVRAAEKYDPARGFRFSTYATWWVRQRLHLSVRSHRLVRVPLRVHSQFEALRRAVRALAGELGRRPTEGELAARCGLTPARAAHVRAAMLPPESLDRELHF-ASHRS------------EQGLVTMLDVTPAAADDGTSAGTATMEQALEWDLLREDLERAMRASLSQRERDIVRMRVGLDDGRAKTATELAAVFQLPAYVILREERNALTKLRVA 1062
            AS P A   E    LR+TRLL+  EELRLGALV+ LVA + R AALA ALGR PT  E A DAG  ++A Y   + RG  AK A+V CNLRLV  LAA+   Q        GP  ADL+QEGA+GL RAAEK++P RG RFSTYATWW+RQR+ +++R HRLVRVP  +H QF  LR A    AGELGR P E ELAA  G+   R A +   M  P SLD  L++ A  RS                                   AT EQ+LEWD+LR  LE AM   L+QRERD+VRM  GLDDGR KTA ELAAVF +P   + RE R A+T LR A
Sbjct:  134 ASSPTALGTELSEHLRATRLLTPAEELRLGALVRALVALDGRRAALAVALGRVPTARECADDAGV-TDADYATVVARGRAAKAALVACNLRLVALLAARAVRQRGGAPAFDGPSYADLVQEGALGLARAAEKFEPERGLRFSTYATWWIRQRIQVALREHRLVRVPANMHLQFNRLRAAAHTPAGELGRAPNEEELAAFLGVPRTRIAEITHGMQTPASLDAALNYGAGQRSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATAEQSLEWDMLRSTLEGAMATHLTQRERDLVRMLAGLDDGRVKTAAELAAVFGVPTSRMRREVRRAMTALRRA 473
[Close]
BLAST of jgi.p|Trimin1|177954 vs. uniprot
Match: A0A7S0NW15_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NW15_9EUKA)

HSP 1 Score: 191 bits (485), Expect = 3.500e-53
Identity = 127/329 (38.60%), Postives = 183/329 (55.62%), Query Frame = 1 
Query:  133 FFAQLRSTRLLSAEEELRLGALVQELVAAEARCAALAEALGREPTLAERAADAGAASEALYTARLRRGLWAKRAMVTCNLRLVVALAAKFQGQGPPLADLIQEGAVGLVRAAEKYDPARGFRFSTYATWWVRQRLHLSVRSH-RLVRVPLRVHSQFEALRRAVRALAGELGRRPTEGELAARCGLTPARAAHVRA-AMLPPESLDRELHFASHRSEQGLVTMLDVTPAAADDGTSAGTATMEQALEWDLLREDLERAMRASLSQRERDIVRMRVGLDDGRAKTATELAAVFQLPAYVILREERNALTKLRVAPDTLRLRDYAELIDALS 1113
            +   +   RLLS EE  +L   VQ+L+  +     L E L REPT+AE AAD G  S   Y   L R   AK  +V  NLRLVV++A K+  QG  L DLIQEG++GL++AAEKYD ARGFR STYATWW+RQ +  ++    R +R+P+ +H     LR+  R L GELGR PTE ELA R G+T  +   +   A L   S+D E+     + E   +++     A   D     ++ +E+ +    LRED+ + + A L++RE  ++R+R GLDDGR +T  E+     +    + + E  AL K+R      +L+DY +   A +
Sbjct:  119 YLKSIGKQRLLSPEEVTKLSKAVQKLLHWDFHREELTEHLAREPTIAELAADLGL-SIGEYANELARMRSAKGLLVNANLRLVVSIAKKYMNQGLTLQDLIQEGSLGLIKAAEKYDAARGFRLSTYATWWIRQSITRAIADQSRTIRMPVHMHDLMNQLRKHRRELQGELGRVPTETELARRMGVTEGKLRQIDCKASLTVVSMDAEIGGGKRQGEGSTISL----QARIADEAPQPSSNLERTM----LREDINKMLDAKLTERESHVLRLRYGLDDGRPRTLEEIGRGLSVTRERVRQIESRALQKMRAPSCASKLQDYMQTESATA 438
[Close]
BLAST of jgi.p|Trimin1|177954 vs. uniprot
Match: R7QJX2_CHOCR (RNA_pol_sigma70 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJX2_CHOCR)

HSP 1 Score: 192 bits (488), Expect = 5.360e-53
Identity = 130/330 (39.39%), Postives = 184/330 (55.76%), Query Frame = 1 
Query:  103 PSAASQPNAEFFAQLRSTRLLSAEEELRLGALVQELVAAEARCAALAEALGREPTLAERAADAGAASEALYTARLRRGLWAKRAMVTCNLRLVVALAAKFQGQGPPLADLIQEGAVGLVRAAEKYDPARGFRFSTYATWWVRQRLHLSVRSH-RLVRVPLRVHSQFEALRRAVRALAGELGRRPTEGELAARCGLTPARAAHVRAAMLPPESLDRELHFASHRSEQGLVTMLDVTPAAADDGTSAGTATMEQALEWDLLREDLERAMRASLSQRERDIVRMRVGLDDGRAKTATELAAVFQLPAYVILREERNALTKLRVAPDTLRLRDY 1089
            P+ A      +   +   RLL AEEE+ LG  +++L+  +     LA+++GR+P+  E A   G   E  +  RL     AK  M+ CNLRLVV++A ++  +G PL+DLIQEG +GL+RA EK+D  RGF+FSTYATWWVRQ +  S+    R +R+P+ ++    A+RRA + L  ELGR P E E+A  C +T  +    R  M     LD  L      S    +T+ DV  +  +        + E  +E  LLR+DLE  +  SL+ RERD+VRMR GLDDGRAKT  E+   F +    + + E  AL KLR    +  LR+Y
Sbjct:  187 PTLADNTVRWYLQLIGGDRLLRAEEEVTLGRQIRDLMQWQRMFVELADSIGRQPSTNEWAQYMGM-DETDFATRLLHAKRAKDRMIVCNLRLVVSIAKRYMNRGMPLSDLIQEGTLGLIRACEKFDAERGFKFSTYATWWVRQAVTRSIADQSRTIRLPVHLYDTILAIRRATKFLTNELGRPPLEQEIADYCKITVEKLRATRVNMQSALPLDCPLS-----SSDDALTLSDVIESDEE--------SPEDRVESSLLRDDLEHVVN-SLTPRERDVVRMRYGLDDGRAKTLEEIGRAFDVTKERVRQIESKALRKLRHPYRSAILREY 501
[Close]
BLAST of jgi.p|Trimin1|177954 vs. uniprot
Match: A0A2V3IIW3_9FLOR (RNA polymerase sigma factor SigA n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IIW3_9FLOR)

HSP 1 Score: 188 bits (477), Expect = 7.940e-53
Identity = 127/325 (39.08%), Postives = 182/325 (56.00%), Query Frame = 1 
Query:   85 KAEFSEPSAASQPNAEFFAQLRSTRLLSAEEELRLGALVQELVAAEARCAALAEALGREPTLAERAADAGAASEALYTARLRRGLWAKRAMVTCNLRLVVALAAKFQGQGPPLADLIQEGAVGLVRAAEKYDPARGFRFSTYATWWVRQRLHLSVRSH-RLVRVPLRVHSQFEALRRAVRALAGELGRRPTEGELAARCGLTPARAAHVRAAMLPPESLDRELHFASHRSEQGLVTMLDVTPAAADDGTSAGTATMEQALEWDLLREDLERAMRASLSQRERDIVRMRVGLDDGRAKTATELAAVFQLPAYVILREERNALTKLR 1056
            K   S PS +      +   + S RLL+AEEE+  G  V++L+  +     LA+ +GREP+ +E A D        +  +L     AK  M+ CNLRLVV++A ++  +G PL+DLIQEG +GL+RA EK+D  +GF+FSTYATWWVRQ +  ++    R +R+P+ ++    A+RRA + L  ELGR P E E+A  C +T  +    R  M     LD  L      +    +T+ DV  +  +        + E  +E  LLR+DLE  +  SL+ RERD+VRMR GLDDGRAKT  E+  VF +    + + E  AL KLR
Sbjct:   36 KPASSSPSVSDNTVRWYLQLIGSDRLLTAEEEVEYGRQVRKLMHWQRNRVELADTIGREPSDSEWA-DFVDIDRQTFATQLVDARKAKDRMIVCNLRLVVSIAKRYLNRGMPLSDLIQEGTLGLIRACEKFDAEKGFKFSTYATWWVRQAVTRAIADQSRTIRLPVHLYDTITAIRRATKYLTNELGRPPLEREIAEYCNITVEKLRSTRINMQAAMPLDCPL-----TNSDDALTLSDVIESDEE--------SPEDRVESSLLRDDLEHVVN-SLTPRERDVVRMRYGLDDGRAKTLEEIGRVFDVTKERVRQIESKALRKLR 345
[Close]
BLAST of jgi.p|Trimin1|177954 vs. uniprot
Match: A0A7S0NWD6_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NWD6_9EUKA)

HSP 1 Score: 184 bits (468), Expect = 4.640e-52
Identity = 123/316 (38.92%), Postives = 177/316 (56.01%), Query Frame = 1 
Query:  172 EEELRLGALVQELVAAEARCAALAEALGREPTLAERAADAGAASEALYTARLRRGLWAKRAMVTCNLRLVVALAAKFQGQGPPLADLIQEGAVGLVRAAEKYDPARGFRFSTYATWWVRQRLHLSVRSH-RLVRVPLRVHSQFEALRRAVRALAGELGRRPTEGELAARCGLTPARAAHVRA-AMLPPESLDRELHFASHRSEQGLVTMLDVTPAAADDGTSAGTATMEQALEWDLLREDLERAMRASLSQRERDIVRMRVGLDDGRAKTATELAAVFQLPAYVILREERNALTKLRVAPDTLRLRDYAELIDALS 1113
            EE  +L   VQ+L+  +     L E L REPT+AE AAD G  S   Y   L R   AK  +V  NLRLVV++A K+  QG  L DLIQEG++GL++AAEKYD ARGFR STYATWW+RQ +  ++    R +R+P+ +H     LR+  R L GELGR PTE ELA R G+T  +   +   A L   S+D E+     + E   +++     A   D     ++ +E+ +    LRED+ + + A L++RE  ++R+R GLDDGR +T  E+     +    + + E  AL K+R      +L+DY +   A +
Sbjct:    5 EEVTKLSKAVQKLLHWDFHREELTEHLAREPTIAELAADLGL-SIGEYANELARMRSAKGLLVNANLRLVVSIAKKYMNQGLTLQDLIQEGSLGLIKAAEKYDAARGFRLSTYATWWIRQSITRAIADQSRTIRMPVHMHDLMNQLRKHRRELQGELGRVPTETELARRMGVTEGKLRQIDCKASLTVVSMDAEIGGGKRQGEGSTISL----QARIADEAPQPSSNLERTM----LREDINKMLDAKLTERESHVLRLRYGLDDGRPRTLEEIGRGLSVTRERVRQIESRALQKMRAPSCASKLQDYMQTESATA 311
[Close]
BLAST of jgi.p|Trimin1|177954 vs. uniprot
Match: A0A7S1TCA4_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TCA4_9RHOD)

HSP 1 Score: 186 bits (473), Expect = 1.120e-50
Identity = 127/321 (39.56%), Postives = 177/321 (55.14%), Query Frame = 1 
Query:  133 FFAQLRSTRLLSAEEELRLGALVQELVAAEARCAALAEALGREPTLAERAADAGAASEALYTARLRRGLWAKRAMVTCNLRLVVALAAKFQGQGPPLADLIQEGAVGLVRAAEKYDPARGFRFSTYATWWVRQRLHLSVRSH-RLVRVPLRVHSQFEALRRAVRALAGELGRRPTEGELAARCGLTPARAAHVRAAMLPPESLDRELHFASHRSEQG-LVTMLDVTPAAADDGTSAGTATMEQALEWDLLREDLERAMRASLSQRERDIVRMRVGLDDGRAKTATELAAVFQLPAYVILREERNALTKLRVAPDTLRLRDY 1089
            F   +   RLL  +EE+ L   +  L+  E +   LA++L REPTL+E A   G   E  +   L     AK  MV  NLRLVV++A K+  +G PL+D+IQEG +GL+RAAEK+D  RGF+FSTYATWWV+Q +  ++    R +R+P+ ++    ++R+  RAL  ELGR PTE E+A R G+   +    R  M P   LD  +         G ++   D  P              E+ +E  LLREDLE  +  SLS RERD+VRMR GLDDGR KT  E+  VF +    + + E  A+ KLR    +  L+D+
Sbjct:  216 FMGLISGDRLLRTDEEVELSRQIALLLNWERKRTELADSLSREPTLSEWALQVGCNPEE-FNFHLCEYRSAKEKMVVSNLRLVVSIAKKYMNRGLPLSDMIQEGTMGLIRAAEKFDGTRGFKFSTYATWWVKQAVARAIADQSRTIRLPVHLYDTLWSIRKVTRALTEELGRNPTEKEIATRVGIPIPKLRATRVYMQPCIPLDNPVQVNEDSLTLGEIIECEDECP--------------EERVEQSLLREDLEHVVN-SLSPRERDVVRMRFGLDDGRVKTLDEIGRVFCVSKERVRQIETKAIRKLRKPCRSSVLQDF 520
[Close]
BLAST of jgi.p|Trimin1|177954 vs. uniprot
Match: A0A7S2ZBG5_9RHOD (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZBG5_9RHOD)

HSP 1 Score: 183 bits (465), Expect = 5.420e-50
Identity = 126/320 (39.38%), Postives = 183/320 (57.19%), Query Frame = 1 
Query:  157 RLLSAEEELRLGALVQELVAAEARCAALAEALGREPTLAERAADAGAASEAL------YTARLRRGLWAKRAMVTCNLRLVVALAAKFQGQGPPLADLIQEGAVGLVRAAEKYDPARGFRFSTYATWWVRQRLHLSVRSH-RLVRVPLRVHSQFEALRRAVRALAGELGRRPTEGELAARCGLTPARAAHVRAAMLPPESLDRELHFASHRSEQGLVTMLDVTPAAADDGTSAGTATMEQALEWDLLREDLERAMRASLSQRERDIVRMRVGLDDGRAKTATELAAVFQLPAYVILREERNALTKLRVAPDTLRLRDYAE 1095
            RLL AEEE+ L   + +L+  E     + E +GR+PT+ E A       EAL      + ++L +   AK  M+T NLRLVV++A ++  +G PL+D+IQEG +GLVRAAEK+D +RG++FSTYATWWV+Q +  ++  H R +R+P+ ++    A+RRA R L   LGR P+E E+AA  GL+ ++    R  M+P   L+  L              +D       D   +   + E  +E  LLREDLE  +  SLS RERD+VRMR GLDDGR KT  E+  +F +    + + E  A+ KLR    +  LRD+ +
Sbjct:  167 RLLRAEEEVDLSRRIAQLLQWERHRQQMYEEMGRDPTVEEWA-------EALEMDIKDFQSQLFQCRKAKEKMITSNLRLVVSIAKRYANRGLPLSDMIQEGTLGLVRAAEKFDGSRGYKFSTYATWWVKQAVARAIADHSRNIRLPVHLYDTIAAVRRATRCLTESLGRSPSEEEIAAYLGLSISKLRSTRIHMMPTIPLESPLKE------------VDDAGMCLGDVLQSTEVSPEDRVERALLREDLEHVIN-SLSPRERDVVRMRYGLDDGRMKTLDEIGRMFCVSKERVRQIETKAIRKLRHPYRSAVLRDFLQ 466
[Close]
BLAST of jgi.p|Trimin1|177954 vs. uniprot
Match: A0A7S2WX55_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WX55_9STRA)

HSP 1 Score: 183 bits (465), Expect = 9.340e-50
Identity = 123/339 (36.28%), Postives = 187/339 (55.16%), Query Frame = 1 
Query:   82 PKAEFSEPSAASQPNAEFFAQLRSTRLLSAEEELRLGALVQELVAAEARCAALAEALGREPTLAERAADAGAASEALYTARLRRGLWAKRAMVTCNLRLVVALAAKFQGQGPPLADLIQEGAVGLVRAAEKYDPARGFRFSTYATWWVRQRLHLSVRSH-RLVRVPLRVHSQFEALRRAVRALAGELGRRPTEGELAARCGLTPARAAHVRAAMLPPESLDRELHFASHRSEQ-GLVTMLDVTPAAADDGTSAGTATMEQALEWDLLREDLERAMRASLSQRERDIVRMRVGLDDGRAKTATELAAVFQLPAYVILREERNALTKLRVAPDTLRLRDYA 1092
            P    S   ++S     FF  +    LL AEEE+ L   VQ ++  E     L + LGR PTL E A+  G   + L   +L RG  AK+AM++ NLRLV+++A ++Q +G  L DLIQEG++GLVRA EK+DP +GF+FSTY+TWW++Q +  ++    R +R+P+ +H     +++  R L   LGR PT  ELA R  L   +   ++    P  S+D +    + +S   G    + +  +  DDG      T     E ++L+ED+E+ +  +LS RE+D++RMR GLD  + KT  E+  VF +    + + E  AL KLR      +LR+YA
Sbjct:  146 PSTAASAAGSSSNELGWFFKSIGQHSLLRAEEEVLLARKVQAMIGWEDVRDGLKDQLGRPPTLEEWASSVGMQPDELRR-KLLRGQSAKKAMISSNLRLVISIAKRYQKRGLALTDLIQEGSLGLVRAVEKFDPEKGFKFSTYSTWWIKQAILRAIADQSRTIRLPVHIHDLLNTMKKQTRELHVSLGRNPTNEELAERMNLPIEKLRFLQECSRPAVSMDAQRRAMTKKSSSAGKGGEVQLGDSIKDDGPCPTQVT-----EANMLKEDIEKLV-CTLSPREQDVIRMRFGLDADKPKTLEEIGNVFSVTRERVRQIEARALHKLRQPYRNHKLREYA 477
[Close]
BLAST of jgi.p|Trimin1|177954 vs. uniprot
Match: A0A5J4YY77_PORPP (RNA polymerase sigma factor SigA n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YY77_PORPP)

HSP 1 Score: 184 bits (466), Expect = 2.220e-49
Identity = 127/311 (40.84%), Postives = 178/311 (57.23%), Query Frame = 1 
Query:  160 LLSAEEELRLGALVQELVAAEARCAALAEALGREPTLAERAADAGAASEALYTARLRRGLWAKRAMVTCNLRLVVALAAKFQGQGPPLADLIQEGAVGLVRAAEKYDPARGFRFSTYATWWVRQRLHLSVRSH-RLVRVPLRVHSQFEALRRAVRALAGELGRRPTEGELAARCGLTPARAAHVRAAMLPPESLDRELHFASHRSEQGLVTMLDVTPAAADDGTSAGTATMEQALEWDLLREDLERAMRASLSQRERDIVRMRVGLDDGRAKTATELAAVFQLPAYVILREERNALTKLRVAPDTLRLRDY 1089
            LLS++EE+ L   +  L+A E    ALAE L REP+  E AA  G   EA +   L     A+  MV  NLRLVV++A ++  +G PL D+IQEG +GL+RA+EK+D  RGF+FSTYATWWV+Q +  S+  + R +R+P+ ++    A++RA R L  + GR PT+ EL+   G+T  +   +R  M P   LD+ L     + + G  T+ ++     D          E  +E  LLREDLE  +  SLS RERD+VRMR GLDDGR KT  E+  VF +    + + E  A+ KLR       LRD+
Sbjct:  262 LLSSQEEVELSRQIAILLAWERERDALAETLNREPSDKEWAAHVGQ-DEASFERDLFLYRAARDRMVLSNLRLVVSIAKRYTSRGLPLGDMIQEGTLGLIRASEKFDGERGFKFSTYATWWVKQAVTRSIADNSRTIRLPVHLYETVNAIKRATRTLNEQHGRAPTDAELSKYMGMTMKKLRSLRIHMQPVVPLDKPL-----KVDDGTTTLGEIIECEDDPP--------EDRVEQSLLREDLEHVVN-SLSPRERDVVRMRYGLDDGRVKTLEEIGRVFAVTKERVRQIENKAIRKLRHPYRAGVLRDF 557
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|177954 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z811_9STRA7.870e-241100.00RNA_pol_sigma70 domain-containing protein n=1 Tax=... [more]
A0A835ZGR1_9STRA9.250e-8050.73Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0NW15_9EUKA3.500e-5338.60Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
R7QJX2_CHOCR5.360e-5339.39RNA_pol_sigma70 domain-containing protein n=1 Tax=... [more]
A0A2V3IIW3_9FLOR7.940e-5339.08RNA polymerase sigma factor SigA n=1 Tax=Gracilari... [more]
A0A7S0NWD6_9EUKA4.640e-5238.92Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S1TCA4_9RHOD1.120e-5039.56Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S2ZBG5_9RHOD5.420e-5039.38Hypothetical protein n=3 Tax=Rhodosorus marinus Ta... [more]
A0A7S2WX55_9STRA9.340e-5036.28Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A5J4YY77_PORPP2.220e-4940.84RNA polymerase sigma factor SigA n=1 Tax=Porphyrid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_161contigContig_161:145650..146765 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|177954|e_gw1.161.27.1
DescriptionSigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released
COG categoryK
Max annot lvl35493|Streptophyta
EggNOG OGsCOG0568@1|root,2QVXR@2759|Eukaryota,37Q7Q@33090|Viridiplantae,3G8RP@35493|Streptophyta
Evalue1.86e-48
Seed ortholog3218.PP1S34_387V6.1
Hectar predicted targeting categoryother localisation
TranscriptId178276
TrackFilteredModels1
ProteinId177954
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177954gene_13120Tribonema minus UTEX_B_3156 geneContig_161 145650..146765 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13120_1exon_13120_1Tribonema minus UTEX_B_3156 exonContig_161 145650..146765 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13120CDS_13120Tribonema minus UTEX_B_3156 CDSContig_161 145650..146765 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177954Trimin1|177954|e_gw1.161.27.1Tribonema minus UTEX_B_3156 polypeptideContig_161 145650..146765 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13120 ID=mRNA_13120|Name=jgi.p|Trimin1|177954|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1116bp|location=Sequence derived from alignment at Contig_161:145650..146765- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGTTGCAACCAGCAGCGCGGAAGCGCCGCGGCAGCGGCAGCAGCA
GCAGCAGCGCGGGCGTAAGCGCGGCCGCAAGCCGAAGGCCGAATTCAGCG
AGCCCTCCGCCGCCTCGCAGCCCAACGCGGAGTTCTTCGCGCAGCTGCGG
AGCACGCGGCTGCTGTCCGCGGAGGAGGAGCTGCGGCTCGGCGCGCTCGT
GCAGGAGCTGGTGGCGGCGGAGGCGCGCTGCGCGGCGCTGGCGGAGGCGC
TCGGCCGCGAGCCGACGCTCGCAGAGCGCGCGGCGGACGCCGGCGCGGCA
TCGGAGGCGCTGTACACGGCACGGCTGCGGCGCGGCCTCTGGGCGAAGCG
CGCCATGGTGACGTGCAACCTGCGCCTCGTTGTCGCGCTCGCGGCCAAGT
TCCAGGGCCAGGGCCCGCCGCTCGCGGACCTCATCCAGGAGGGCGCGGTA
GGCCTCGTGCGCGCCGCCGAGAAGTACGACCCCGCGCGCGGCTTCCGCTT
TTCGACGTACGCGACGTGGTGGGTGCGCCAGCGCCTGCACCTCAGCGTGC
GCAGCCACCGCCTCGTGCGCGTCCCGCTGCGCGTGCACAGCCAGTTCGAG
GCGCTGCGCCGCGCGGTGCGCGCGCTCGCGGGCGAGCTCGGGCGGCGCCC
CACCGAGGGCGAGCTCGCGGCGCGCTGCGGCCTCACGCCCGCGCGCGCCG
CGCACGTGCGCGCCGCCATGCTCCCCCCGGAGTCCCTCGACCGCGAGCTC
CACTTCGCGTCGCACCGCTCCGAGCAGGGGCTCGTGACGATGCTCGACGT
GACGCCGGCCGCCGCGGACGACGGCACGAGCGCGGGCACCGCCACGATGG
AGCAGGCGCTGGAGTGGGACCTGCTACGCGAGGACCTCGAGCGCGCGATG
CGCGCGTCGCTCAGCCAGCGCGAGCGCGACATCGTGCGCATGCGCGTCGG
GCTTGACGACGGGCGCGCCAAGACGGCGACGGAGCTCGCCGCCGTGTTCC
AGCTGCCCGCGTACGTCATCCTGCGCGAGGAGCGCAACGCGCTCACCAAG
CTGCGTGTCGCGCCCGACACGCTGCGCCTGCGCGACTACGCGGAGCTCAT
TGACGCCCTCTCGTAG
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protein sequence of jgi.p|Trimin1|177954

>Trimin1|177954|e_gw1.161.27.1 ID=Trimin1|177954|e_gw1.161.27.1|Name=jgi.p|Trimin1|177954|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=372bp
MSVATSSAEAPRQRQQQQQRGRKRGRKPKAEFSEPSAASQPNAEFFAQLR
STRLLSAEEELRLGALVQELVAAEARCAALAEALGREPTLAERAADAGAA
SEALYTARLRRGLWAKRAMVTCNLRLVVALAAKFQGQGPPLADLIQEGAV
GLVRAAEKYDPARGFRFSTYATWWVRQRLHLSVRSHRLVRVPLRVHSQFE
ALRRAVRALAGELGRRPTEGELAARCGLTPARAAHVRAAMLPPESLDREL
HFASHRSEQGLVTMLDVTPAAADDGTSAGTATMEQALEWDLLREDLERAM
RASLSQRERDIVRMRVGLDDGRAKTATELAAVFQLPAYVILREERNALTK
LRVAPDTLRLRDYAELIDALS*
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mRNA from alignment at Contig_161:145650..146765-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13120 ID=mRNA_13120|Name=jgi.p|Trimin1|177954|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1116bp|location=Sequence derived from alignment at Contig_161:145650..146765- (Tribonema minus UTEX_B_3156 )
ATGTCCGTTGCAACCAGCAGCGCGGAAGCGCCGCGGCAGCGGCAGCAGCA
GCAGCAGCGCGGGCGTAAGCGCGGCCGCAAGCCGAAGGCCGAATTCAGCG
AGCCCTCCGCCGCCTCGCAGCCCAACGCGGAGTTCTTCGCGCAGCTGCGG
AGCACGCGGCTGCTGTCCGCGGAGGAGGAGCTGCGGCTCGGCGCGCTCGT
GCAGGAGCTGGTGGCGGCGGAGGCGCGCTGCGCGGCGCTGGCGGAGGCGC
TCGGCCGCGAGCCGACGCTCGCAGAGCGCGCGGCGGACGCCGGCGCGGCA
TCGGAGGCGCTGTACACGGCACGGCTGCGGCGCGGCCTCTGGGCGAAGCG
CGCCATGGTGACGTGCAACCTGCGCCTCGTTGTCGCGCTCGCGGCCAAGT
TCCAGGGCCAGGGCCCGCCGCTCGCGGACCTCATCCAGGAGGGCGCGGTA
GGCCTCGTGCGCGCCGCCGAGAAGTACGACCCCGCGCGCGGCTTCCGCTT
TTCGACGTACGCGACGTGGTGGGTGCGCCAGCGCCTGCACCTCAGCGTGC
GCAGCCACCGCCTCGTGCGCGTCCCGCTGCGCGTGCACAGCCAGTTCGAG
GCGCTGCGCCGCGCGGTGCGCGCGCTCGCGGGCGAGCTCGGGCGGCGCCC
CACCGAGGGCGAGCTCGCGGCGCGCTGCGGCCTCACGCCCGCGCGCGCCG
CGCACGTGCGCGCCGCCATGCTCCCCCCGGAGTCCCTCGACCGCGAGCTC
CACTTCGCGTCGCACCGCTCCGAGCAGGGGCTCGTGACGATGCTCGACGT
GACGCCGGCCGCCGCGGACGACGGCACGAGCGCGGGCACCGCCACGATGG
AGCAGGCGCTGGAGTGGGACCTGCTACGCGAGGACCTCGAGCGCGCGATG
CGCGCGTCGCTCAGCCAGCGCGAGCGCGACATCGTGCGCATGCGCGTCGG
GCTTGACGACGGGCGCGCCAAGACGGCGACGGAGCTCGCCGCCGTGTTCC
AGCTGCCCGCGTACGTCATCCTGCGCGAGGAGCGCAACGCGCTCACCAAG
CTGCGTGTCGCGCCCGACACGCTGCGCCTGCGCGACTACGCGGAGCTCAT
TGACGCCCTCTCGTAG
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Coding sequence (CDS) from alignment at Contig_161:145650..146765-

>mRNA_13120 ID=mRNA_13120|Name=jgi.p|Trimin1|177954|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1116bp|location=Sequence derived from alignment at Contig_161:145650..146765- (Tribonema minus UTEX_B_3156 )
ATGTCCGTTGCAACCAGCAGCGCGGAAGCGCCGCGGCAGCGGCAGCAGCA
GCAGCAGCGCGGGCGTAAGCGCGGCCGCAAGCCGAAGGCCGAATTCAGCG
AGCCCTCCGCCGCCTCGCAGCCCAACGCGGAGTTCTTCGCGCAGCTGCGG
AGCACGCGGCTGCTGTCCGCGGAGGAGGAGCTGCGGCTCGGCGCGCTCGT
GCAGGAGCTGGTGGCGGCGGAGGCGCGCTGCGCGGCGCTGGCGGAGGCGC
TCGGCCGCGAGCCGACGCTCGCAGAGCGCGCGGCGGACGCCGGCGCGGCA
TCGGAGGCGCTGTACACGGCACGGCTGCGGCGCGGCCTCTGGGCGAAGCG
CGCCATGGTGACGTGCAACCTGCGCCTCGTTGTCGCGCTCGCGGCCAAGT
TCCAGGGCCAGGGCCCGCCGCTCGCGGACCTCATCCAGGAGGGCGCGGTA
GGCCTCGTGCGCGCCGCCGAGAAGTACGACCCCGCGCGCGGCTTCCGCTT
TTCGACGTACGCGACGTGGTGGGTGCGCCAGCGCCTGCACCTCAGCGTGC
GCAGCCACCGCCTCGTGCGCGTCCCGCTGCGCGTGCACAGCCAGTTCGAG
GCGCTGCGCCGCGCGGTGCGCGCGCTCGCGGGCGAGCTCGGGCGGCGCCC
CACCGAGGGCGAGCTCGCGGCGCGCTGCGGCCTCACGCCCGCGCGCGCCG
CGCACGTGCGCGCCGCCATGCTCCCCCCGGAGTCCCTCGACCGCGAGCTC
CACTTCGCGTCGCACCGCTCCGAGCAGGGGCTCGTGACGATGCTCGACGT
GACGCCGGCCGCCGCGGACGACGGCACGAGCGCGGGCACCGCCACGATGG
AGCAGGCGCTGGAGTGGGACCTGCTACGCGAGGACCTCGAGCGCGCGATG
CGCGCGTCGCTCAGCCAGCGCGAGCGCGACATCGTGCGCATGCGCGTCGG
GCTTGACGACGGGCGCGCCAAGACGGCGACGGAGCTCGCCGCCGTGTTCC
AGCTGCCCGCGTACGTCATCCTGCGCGAGGAGCGCAACGCGCTCACCAAG
CTGCGTGTCGCGCCCGACACGCTGCGCCTGCGCGACTACGCGGAGCTCAT
TGACGCCCTCTCGTAG
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