mRNA_13089 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|145229
Unique NamemRNA_13089
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|145229 vs. uniprot
Match: A0A835YRD4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRD4_9STRA)

HSP 1 Score: 322 bits (825), Expect = 2.310e-111
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1
Query:    1 NRWMHVCIVNEGAKIRLYLNGTLDSQRTTASAHRTAAQAPHPIFVGRPAHATPEASRPSTEGFQGAVAHLRLYTRALSPIHVRIICEPGPPPAEPRPDAMCHQLSATLCAAAAASTKLRGAISAAPWAQLWLSLLLGGSTIRLRTSAARMLALLAPHMDPAHL 489
            NRWMHVCIVNEGAKIRLYLNGTLDSQRTTASAHRTAAQAPHPIFVGRPAHATPEASRPSTEGFQGAVAHLRLYTRALSPIHVRIICEPGPPPAEPRPDAMCHQLSATLCAAAAASTKLRGAISAAPWAQLWLSLLLGGSTIRLRTSAARMLALLAPHMDPAHL
Sbjct:    1 NRWMHVCIVNEGAKIRLYLNGTLDSQRTTASAHRTAAQAPHPIFVGRPAHATPEASRPSTEGFQGAVAHLRLYTRALSPIHVRIICEPGPPPAEPRPDAMCHQLSATLCAAAAASTKLRGAISAAPWAQLWLSLLLGGSTIRLRTSAARMLALLAPHMDPAHL 163          
BLAST of jgi.p|Trimin1|145229 vs. uniprot
Match: A0A6H5JS79_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS79_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.200e-19
Identity = 62/162 (38.27%), Postives = 91/162 (56.17%), Query Frame = 1
Query:    7 WMHVCIVNEGAKIRLYLNGTLDSQRTTASAHRTAAQAPHPIFVGRPAHATPEASRPSTE---GFQGAVAHLRLYTRALSPIHVRIICEPGPPPAEPRPDAMCHQLSATLCAAAAASTKLRGAISAAPWAQLWLSLLLGGSTIRLRTSAARMLALLAPHMDPA 483
            W HV +++E  K+RLYLNG+LD QRT+  A R      HP++VG+     P+ +        G +G++AHLR +TRALSPIHVRIIC+PGPP A    D   + L A L   +  S + +       W  L+L     G T+R++ +  R+L  + P + P+
Sbjct: 2135 WAHVGLISEHNKLRLYLNGSLDCQRTSTGALRANR---HPLYVGK----VPDGAMRLDGVRGGVEGSIAHLRYFTRALSPIHVRIICDPGPPEAAKVEDRHLYHLCACLVPLST-SPECQRHFEHPDWLCLFLQAFTHG-TVRVQQAVCRLLREILPRVPPS 2287          
BLAST of jgi.p|Trimin1|145229 vs. uniprot
Match: D8LBD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBD8_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 1.030e-18
Identity = 62/164 (37.80%), Postives = 92/164 (56.10%), Query Frame = 1
Query:    1 NRWMHVCIVNEGAKIRLYLNGTLDSQRTTASAHRTAAQAPHPIFVGRPAHATPEASRPSTE---GFQGAVAHLRLYTRALSPIHVRIICEPGPPPAEPRPDAMCHQLSATLCAAAAASTKLRGAISAAPWAQLWLSLLLGGSTIRLRTSAARMLALLAPHMDPA 483
            NRW HV +++E  K+RLYLNG+LD QRT+  A R      HP++VG+     P+ +        G +G++A+LR +TRALSPIHVRII +PGPP A    D   + L A L   +  S + +       W  L+L     G T+R++ +  R+L  + P + P+
Sbjct: 2060 NRWAHVGLISEHNKLRLYLNGSLDCQRTSTGALRANR---HPLYVGK----VPDGAMRLDGVRGGVEGSIANLRYFTRALSPIHVRIIFDPGPPEAAKVEDRHLYHLCACLVPIST-SPECQRHFEHPDWLCLFLQAFTHG-TVRVQQAVCRLLQEILPRVPPS 2214          
BLAST of jgi.p|Trimin1|145229 vs. uniprot
Match: A0A1W0A4M9_9STRA (HECT E3 ubiquitin ligase (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A4M9_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 5.800e-15
Identity = 58/170 (34.12%), Postives = 89/170 (52.35%), Query Frame = 1
Query:    1 NRWMHVCIVNEGAKIRLYLNGTLDSQRTTASAHRTAAQAPHPIFVGRPAHATPEASRPST-------EGFQGAVAHLRLYTRALSPIHVRIICEPGPPPAEPRPDAMCHQLSATLCAAAAASTKLRGAISAAPWAQLWLSLLLGGSTIRLRTSAARMLALLAPHMDPAHL 489
            N+W H+ IV EG K+RL++NG LD Q+T +S  +        I++G+   A  +AS            G +G +A  RL+TRALS IH+ I+ + GPPP     D  C+Q+   L   A +S      +    W +L + +L GG T R++  + R+L  +  H+DP  L
Sbjct:  114 NQWYHIGIVFEGRKLRLFVNGVLDVQKTLSSPIKMCISCDWNIYLGKLTQAA-DASLGDLWSLMNIHSGLEGMLAQFRLHTRALSAIHLHILYDQGPPPLFVTTDHSCYQIGILLLLLAQSSESAPVLVEIR-WLRLIMWMLRGG-TYRVQQLSLRILKQILTHIDPFQL 280          
BLAST of jgi.p|Trimin1|145229 vs. uniprot
Match: A0A1V9YWG2_9STRA (HECT E3 ubiquitin ligase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YWG2_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 2.040e-14
Identity = 57/165 (34.55%), Postives = 91/165 (55.15%), Query Frame = 1
Query:    1 NRWMHVCIVNEGAKIRLYLNGTLDSQRTTASAHRTAAQAPHPIFVGRPAHATPEA-SRPSTE-GFQGAVAHLRLYTRALSPIHVRIICEPGPPPAEPRPDAMCHQLSATLCAAAAASTKLRGAISAAPWAQLWLSLLLGGSTIRLRTSAARMLALLAPHMDPAHL 489
            N W HV IV EG K+RL++NG LD Q++ ++    + + P  +++G+ A    +  S  S   G +G +A  RL+ RALS IH+ I+ + GPPP     DA C+ + A +   A +S  +   ++   W +L   +L GG T R++    R+L  L P++ PA L
Sbjct: 1908 NMWYHVGIVLEGPKLRLFVNGALDVQKSLSAPVALSGRLPWHVYLGKVAAPVGDIWSLLSAHCGLEGMLAQFRLHLRALSAIHLHILYDQGPPPVLVTTDADCYHMGALVLLLAQSSEGV-AVLTDRRWLRLLFWMLRGG-TYRVQQLVVRILKKLLPYVAPAAL 2070          
BLAST of jgi.p|Trimin1|145229 vs. uniprot
Match: A0A2R5GCX2_9STRA (E3 ubiquitin-protein ligase HECTD3 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GCX2_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.840e-12
Identity = 58/163 (35.58%), Postives = 85/163 (52.15%), Query Frame = 1
Query:    1 NRWMHVCIVNEGAKIRLYLNGTLDSQRTTASAHRTAAQ--APHPIFVGRPAHATPEASRPSTEGFQGAVAHLRLYTRALSPIHVRIICEPGPPPAEPRPDAMCHQLSATLCAAAAASTKLRGAISAAPWAQLWLSLLLGGSTIRLRTSAARMLALLAPHMDPA 483
            N W HV IV +  K+RL++NG LD Q+ ++S H  +A+  A  PI VG+P        R    GF+G VA L+  TRALSPIHV ++ + GPP      D  C QL   L      S   R +++   W ++   L+  G T R++ +  R+  +L P   P+
Sbjct: 2683 NAWTHVAIVMDQGKLRLFINGDLDGQQQSSSPHVLSAEQSAQLPICVGKP-----NLDR-MLSGFEGYVAQLKYRTRALSPIHVHVMFDQGPPQHLRVLDRHCFQL-VVLQQTLTESAIGRKSLAMPRWLRIHARLIRYG-TPRVQQAVLRLWRVLFPSTHPS 2837          
BLAST of jgi.p|Trimin1|145229 vs. uniprot
Match: A0A482SQ10_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SQ10_9ARCH)

HSP 1 Score: 62.0 bits (149), Expect = 3.880e-8
Identity = 36/89 (40.45%), Postives = 48/89 (53.93%), Query Frame = 1
Query:    7 WMHVCIVNEGAKIRLYLNGTLDSQRTTASAHRTAAQAPHPIFVGRPAHATPEASRPSTEGFQGAVAHLRLYTRALSPIHVRIICEPGPP 273
            W HV I  E  KI+L++NGTLD Q      +  A   P  +  G P+      S    EGF G +A  + Y++ LSPIHVR+I + GPP
Sbjct: 1343 WSHVAIAVEAKKIKLFINGTLDPQVANTKGNSRAYSFPL-VIGGCPSSFRTRISN-VREGFDGMLAQCKYYSKPLSPIHVRVIFDNGPP 1429          
BLAST of jgi.p|Trimin1|145229 vs. uniprot
Match: A0A2D4CHK5_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CHK5_PYTIN)

HSP 1 Score: 59.3 bits (142), Expect = 1.920e-7
Identity = 42/113 (37.17%), Postives = 52/113 (46.02%), Query Frame = 1
Query:    7 WMHVCIVNEGAKIRLYLNGTLDSQRTTASAHRTAAQAPHPIFVGRPAHATPEASRPSTEG------------------------FQGAVAHLRLYTRALSPIHVRIICEPGPP 273
            W HV I  EGAK+RLY+NG LDSQRT A A   AA A   + +       P     S  G                        F+G ++H R + RALSPIHVRI+ +   P
Sbjct:  100 WTHVAIALEGAKMRLYINGVLDSQRTMA-APLVAACAASAVSLDFHFGRLPSVEISSVSGAGRLLSTLYLRQDGEKKNSGTLRSFRGLLSHFRFHNRALSPIHVRIVFDEKKP 211          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|145229 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A835YRD4_9STRA2.310e-111100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A6H5JS79_9PHAE1.200e-1938.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBD8_ECTSI1.030e-1837.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1W0A4M9_9STRA5.800e-1534.12HECT E3 ubiquitin ligase (Fragment) n=1 Tax=Thraus... [more]
A0A1V9YWG2_9STRA2.040e-1434.55HECT E3 ubiquitin ligase n=1 Tax=Achlya hypogyna T... [more]
A0A2R5GCX2_9STRA2.840e-1235.58E3 ubiquitin-protein ligase HECTD3 n=1 Tax=Hondaea... [more]
A0A482SQ10_9ARCH3.880e-840.45Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A2D4CHK5_PYTIN1.920e-737.17Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_96contigContig_96:524907..525395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|145229|gw1.96.43.1
Descriptionguanyl-nucleotide exchange factor activity
COG categoryDZ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5184@1|root,KOG1426@2759|Eukaryota
Evalue1.68e-19
Seed ortholog2880.D8LBD8
Hectar predicted targeting categoryother localisation
TranscriptId145551
TrackFilteredModels1
ProteinId145229
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|145229gene_13089Tribonema minus UTEX_B_3156 geneContig_96 524907..525395 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13089_1exon_13089_1Tribonema minus UTEX_B_3156 exonContig_96 524907..525395 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13089CDS_13089Tribonema minus UTEX_B_3156 CDSContig_96 524907..525395 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|145229Trimin1|145229|gw1.96.43.1Tribonema minus UTEX_B_3156 polypeptideContig_96 524907..525395 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13089 ID=mRNA_13089|Name=jgi.p|Trimin1|145229|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=489bp|location=Sequence derived from alignment at Contig_96:524907..525395- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AACAGGTGGATGCATGTGTGCATCGTCAACGAAGGCGCAAAGATACGCTT
GTACCTGAATGGTACTCTTGACTCACAGCGCACCACAGCCTCTGCGCACC
GCACTGCGGCGCAGGCGCCGCATCCAATCTTTGTGGGTCGCCCCGCTCAT
GCAACACCGGAAGCATCCAGACCATCAACTGAGGGCTTTCAGGGAGCGGT
GGCGCATCTACGGCTGTACACCAGAGCACTTTCGCCTATACATGTCCGCA
TCATCTGTGAGCCGGGCCCACCTCCTGCAGAGCCACGCCCTGATGCCATG
TGCCATCAGCTGAGTGCTACACTATGTGCTGCAGCAGCAGCTTCAACCAA
ATTGCGTGGAGCTATATCTGCGGCACCCTGGGCACAGTTGTGGCTATCGC
TATTACTAGGAGGGTCCACCATACGGCTCCGAACATCTGCTGCACGCATG
CTGGCACTTCTAGCTCCGCACATGGACCCTGCTCACCTG
back to top

protein sequence of jgi.p|Trimin1|145229

>Trimin1|145229|gw1.96.43.1 ID=Trimin1|145229|gw1.96.43.1|Name=jgi.p|Trimin1|145229|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=163bp
NRWMHVCIVNEGAKIRLYLNGTLDSQRTTASAHRTAAQAPHPIFVGRPAH
ATPEASRPSTEGFQGAVAHLRLYTRALSPIHVRIICEPGPPPAEPRPDAM
CHQLSATLCAAAAASTKLRGAISAAPWAQLWLSLLLGGSTIRLRTSAARM
LALLAPHMDPAHL
back to top

mRNA from alignment at Contig_96:524907..525395-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13089 ID=mRNA_13089|Name=jgi.p|Trimin1|145229|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=489bp|location=Sequence derived from alignment at Contig_96:524907..525395- (Tribonema minus UTEX_B_3156 )
AACAGGTGGATGCATGTGTGCATCGTCAACGAAGGCGCAAAGATACGCTT GTACCTGAATGGTACTCTTGACTCACAGCGCACCACAGCCTCTGCGCACC GCACTGCGGCGCAGGCGCCGCATCCAATCTTTGTGGGTCGCCCCGCTCAT GCAACACCGGAAGCATCCAGACCATCAACTGAGGGCTTTCAGGGAGCGGT GGCGCATCTACGGCTGTACACCAGAGCACTTTCGCCTATACATGTCCGCA TCATCTGTGAGCCGGGCCCACCTCCTGCAGAGCCACGCCCTGATGCCATG TGCCATCAGCTGAGTGCTACACTATGTGCTGCAGCAGCAGCTTCAACCAA ATTGCGTGGAGCTATATCTGCGGCACCCTGGGCACAGTTGTGGCTATCGC TATTACTAGGAGGGTCCACCATACGGCTCCGAACATCTGCTGCACGCATG CTGGCACTTCTAGCTCCGCACATGGACCCTGCTCACCTG
back to top

Coding sequence (CDS) from alignment at Contig_96:524907..525395-

>mRNA_13089 ID=mRNA_13089|Name=jgi.p|Trimin1|145229|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=489bp|location=Sequence derived from alignment at Contig_96:524907..525395- (Tribonema minus UTEX_B_3156 )
AACAGGTGGATGCATGTGTGCATCGTCAACGAAGGCGCAAAGATACGCTT
GTACCTGAATGGTACTCTTGACTCACAGCGCACCACAGCCTCTGCGCACC
GCACTGCGGCGCAGGCGCCGCATCCAATCTTTGTGGGTCGCCCCGCTCAT
GCAACACCGGAAGCATCCAGACCATCAACTGAGGGCTTTCAGGGAGCGGT
GGCGCATCTACGGCTGTACACCAGAGCACTTTCGCCTATACATGTCCGCA
TCATCTGTGAGCCGGGCCCACCTCCTGCAGAGCCACGCCCTGATGCCATG
TGCCATCAGCTGAGTGCTACACTATGTGCTGCAGCAGCAGCTTCAACCAA
ATTGCGTGGAGCTATATCTGCGGCACCCTGGGCACAGTTGTGGCTATCGC
TATTACTAGGAGGGTCCACCATACGGCTCCGAACATCTGCTGCACGCATG
CTGGCACTTCTAGCTCCGCACATGGACCCTGCTCACCTG
back to top