mRNA_13070 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351669
Unique NamemRNA_13070
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|351669 vs. uniprot
Match: A0A835YGP9_9STRA (Utp12 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGP9_9STRA)

HSP 1 Score: 329 bits (843), Expect = 5.910e-112
Identity = 217/218 (99.54%), Postives = 217/218 (99.54%), Query Frame = 1
Query:    1 MAFDNARNPDDASGGITKGLPSAAEKLRAVLKQLLQALHAKDEDLLQRCLSVTDPEIVDGVINRLPRKRVQPLYRLLVEQFEATPARGTSYSVWVHSMLSHHMSHIGGIQGMESAPKSKPPRSGLIELLQKAVDQRLPRLEKLLAVTGRLDLVLSHVPATPAANAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEASEAGSDAE 654
            MAFDNARNPDDASGGITKGLPSAAEKLRAVLKQLLQALHAKDEDLLQRCLSVTDPEIVDGVINRLPRKRVQPLYRLLVEQFEATPARGTSYSVWVHSMLSHHMSHIGGIQGMESAPKSKPPRSGLIELLQKAVDQRLPRLEKLLAVTGRLDLVLSHVPATPAANAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SEASEAGSDAE
Sbjct:    1 MAFDNARNPDDASGGITKGLPSAAEKLRAVLKQLLQALHAKDEDLLQRCLSVTDPEIVDGVINRLPRKRVQPLYRLLVEQFEATPARGTSYSVWVHSMLSHHMSHIGGIQGMESAPKSKPPRSGLIELLQKAVDQRLPRLEKLLAVTGRLDLVLSHVPATPAANAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESEASEAGSDAE 218          
BLAST of jgi.p|Trimin1|351669 vs. uniprot
Match: A0A8H7PZ10_9FUNG (Utp12 domain-containing protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7PZ10_9FUNG)

HSP 1 Score: 82.4 bits (202), Expect = 2.160e-14
Identity = 47/145 (32.41%), Postives = 78/145 (53.79%), Query Frame = 1
Query:   43 GITKGLPS--AAEKLRAVLKQLLQALHAKDEDLLQRCLSVTDPEIVDGVINRLPRKRVQPLYRLLVEQFEATPARGTSYSVWVHSMLSHHMSHIGGIQGMESAPKSKPPRSGLIELLQKAVDQRLPRLEKLLAVTGRLDLVLSHV 471
            G   G P+  A     ++ + L+QALH+ D  LL+ CL+ ++PEI+   + RLP   V P  + +V++F+  P RG +   W+ ++L  H +++  +          P   G +    KA+D RL   +KLL + GRLDLV+S +
Sbjct:  457 GAQNGKPNKYATPSASSLQQMLVQALHSNDTQLLEACLTYSNPEIIRNTVRRLPTTFVIPFLQQIVDKFQERPNRGKALLEWIKAILLIHTAYLMTV----------PDLVGKLSNFYKALDARLGVFQKLLGLHGRLDLVMSQI 591          
BLAST of jgi.p|Trimin1|351669 vs. uniprot
Match: A0A8H8DIE3_9FUNG (Dip2/Utp12 family-domain-containing protein (Fragment) n=1 Tax=Olpidium bornovanus TaxID=278681 RepID=A0A8H8DIE3_9FUNG)

HSP 1 Score: 80.1 bits (196), Expect = 8.100e-14
Identity = 52/165 (31.52%), Postives = 85/165 (51.52%), Query Frame = 1
Query:    1 MAFDNARNPDDASGGIT---KGLPSAAEKLRAVLKQLLQALHAKDEDLLQRCLSVTDPEIVDGVINRLPRKRVQPLYRLLVEQFEATPARGTSYSVWVHSMLSHHMSHIGGIQGMESAPKSKPPRSGLIELLQKAVDQRLPRLEKLLAVTGRLDLVLSHVPATPA 486
            +A D A+    AS G+    K +P  A K  ++   L+QALH+ D  LL+ CL+ T+PE++   + RLP + V PL R +V +F+  P R      WV + L  H  ++       + P+     SG  +    A+D RL    +L+ ++GRL++V + + A  A
Sbjct:  218 VAEDGAKPVCGASNGVVACEKVVPGGAPKASSLSTALVQALHSADHQLLELCLTHTNPEVIRSSVRRLPPQYVVPLLREIVTRFQRRPNRAAQLLEWVRAPLLLHAGYL------MTVPELVRELSGFYQ----AMDARLASFRRLMHLSGRLEMVNTQISARHA 372          
BLAST of jgi.p|Trimin1|351669 vs. uniprot
Match: A0A0L0GD02_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0GD02_9EUKA)

HSP 1 Score: 78.6 bits (192), Expect = 4.360e-13
Identity = 50/148 (33.78%), Postives = 74/148 (50.00%), Query Frame = 1
Query:   28 DDASGGITKGLPSAAEKLRAVLKQLLQALHAKDEDLLQRCLSVTDPEIVDGVINRLPRKRVQPLYRLLVEQFEATPARGTSYSVWVHSMLSHHMSHIGGIQGMESAPKSKPPRSGLIELLQKAVDQRLPRLEKLLAVTGRLDLVLSHV 471
            DD     ++G  + A+ L    K L QALH+ D  LL+ C+S T+  +V   +  LP   V P    +V +F+A P RG     W+ +++  H S++       + P  +    GL  L    VD RL    KLLA+ GRLDL+LS +
Sbjct:  414 DDMPTKRSRGKTTKADSLA---KLLAQALHSNDLSLLEECISNTNEHVVRNTVQHLPTPYVIPFLEAIVAKFQAKPVRGAQLVPWIKTVMVVHTSYL------MTVPNVRESLGGLSSL----VDARLSVFRKLLALNGRLDLLLSQI 548          
BLAST of jgi.p|Trimin1|351669 vs. uniprot
Match: A0A8H7UN63_MORIS (Utp12 domain-containing protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7UN63_MORIS)

HSP 1 Score: 76.6 bits (187), Expect = 2.030e-12
Identity = 46/140 (32.86%), Postives = 74/140 (52.86%), Query Frame = 1
Query:   52 KGLPSAAEKLRAVLKQLLQALHAKDEDLLQRCLSVTDPEIVDGVINRLPRKRVQPLYRLLVEQFEATPARGTSYSVWVHSMLSHHMSHIGGIQGMESAPKSKPPRSGLIELLQKAVDQRLPRLEKLLAVTGRLDLVLSHV 471
            K  P  A  L+   + L+QALH+ D  LL+ CL+ ++PEI+   + RLP   V P  + +V++F+  P RG     W+ ++L  H +++  +          P   G +     A+D RL   +KLL + GRLDLV+S +
Sbjct:  465 KHQPPPASSLQ---QMLVQALHSNDTQLLEACLTHSNPEIIRNTVRRLPTAWVIPFLQQIVDKFQERPNRGKVLLEWIKAILLIHTAYLMTV----------PDLVGKLSNFYMALDARLGVFQKLLGLHGRLDLVMSQI 591          
BLAST of jgi.p|Trimin1|351669 vs. uniprot
Match: A0A6A4ZZS5_9STRA (Utp12 domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZZS5_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 7.450e-12
Identity = 48/160 (30.00%), Postives = 79/160 (49.38%), Query Frame = 1
Query:   10 DNARNPDDASGGITKGLPSAAEKLRA------VLKQLLQALHAKDEDLLQRCLSVTDPEIVDGVINRLPRKRVQPLYRLLVEQFEATPARGTSYSVWVHSMLSHHMSHIGGIQGMESAPKSKPPRSGLIELLQKAVDQRLPRLEKLLAVTGRLDLVLSHV 471
            DN    DDA   +T   P    + +A      ++  L QAL +KD  LL+ CL + DP+++D    RL   RV P   LLVE+FE  P RG +   W+  ++ +H +++  +          P     +  L +++D R+    +L  ++GRL+LVL  +
Sbjct:   13 DNEDIDDDALTTVTLR-PHTLSRAKAQASSTSLVSVLEQALQSKDNALLEHCLRIHDPKVIDETCRRLNTTRVFPFLLLLVEKFEKRPTRGATMCQWIKFLMLNHTAYLMTV----------PDVIDKLSTLYQSLDARVKVFPQLHKLSGRLNLVLGQI 161          
BLAST of jgi.p|Trimin1|351669 vs. uniprot
Match: A0A7S4NW26_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NW26_GUITH)

HSP 1 Score: 73.6 bits (179), Expect = 1.470e-11
Identity = 45/134 (33.58%), Postives = 72/134 (53.73%), Query Frame = 1
Query:   70 AEKLRAVLKQLLQALHAKDEDLLQRCLSVTDPEIVDGVINRLPRKRVQPLYRLLVEQFEATPARGTSYSVWVHSMLSHHMSHIGGIQGMESAPKSKPPRSGLIELLQKAVDQRLPRLEKLLAVTGRLDLVLSHV 471
            A+ +  VLKQ   AL + D+ L+Q CL VT+ +I++  + RLP K V  L + +V +F+  PAR  +   W+ ++L+ H S +           S+P     +  L + V+ R+    KLL + GRLDL L+ V
Sbjct:  199 ADSIHVVLKQ---ALDSDDKALVQECLGVTNHQIINETVRRLPPKHVTMLLKKIVAKFQQKPARSLALVTWIKAILTQHTSLL----------MSQPDLIKNLTPLYQIVENRINTYHKLLKLEGRLDLALTQV 319          
BLAST of jgi.p|Trimin1|351669 vs. uniprot
Match: L1JNT7_GUITC (Utp12 domain-containing protein n=3 Tax=Guillardia theta TaxID=55529 RepID=L1JNT7_GUITC)

HSP 1 Score: 73.6 bits (179), Expect = 2.290e-11
Identity = 45/134 (33.58%), Postives = 72/134 (53.73%), Query Frame = 1
Query:   70 AEKLRAVLKQLLQALHAKDEDLLQRCLSVTDPEIVDGVINRLPRKRVQPLYRLLVEQFEATPARGTSYSVWVHSMLSHHMSHIGGIQGMESAPKSKPPRSGLIELLQKAVDQRLPRLEKLLAVTGRLDLVLSHV 471
            A+ +  VLKQ   AL + D+ L+Q CL VT+ +I++  + RLP K V  L + +V +F+  PAR  +   W+ ++L+ H S +           S+P     +  L + V+ R+    KLL + GRLDL L+ V
Sbjct:  463 ADSIHVVLKQ---ALDSDDKALVQECLGVTNHQIINETVRRLPPKHVTMLLKKIVAKFQQKPARSLALVTWIKAILTQHTSLL----------MSQPDLIKNLTPLYQIVENRINTYHKLLKLEGRLDLALTQV 583          
BLAST of jgi.p|Trimin1|351669 vs. uniprot
Match: W4H0X9_9STRA (Utp12 domain-containing protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H0X9_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 4.080e-11
Identity = 48/160 (30.00%), Postives = 79/160 (49.38%), Query Frame = 1
Query:   10 DNARNPDDASGGITKGLPSAAEKLRA------VLKQLLQALHAKDEDLLQRCLSVTDPEIVDGVINRLPRKRVQPLYRLLVEQFEATPARGTSYSVWVHSMLSHHMSHIGGIQGMESAPKSKPPRSGLIELLQKAVDQRLPRLEKLLAVTGRLDLVLSHV 471
            DN    DDA   +T   P    + +A      ++  L QAL +KD  LL+ CL + DP+++D    RL   RV P   LLVE+FE  P RG +   W+  ++ +H +++  +          P     +  L +++D R+    +L  ++GRL+LVL  +
Sbjct:  432 DNEDIEDDALTTVTPR-PHTLSRAKAQASSTSLVSVLEQALQSKDNALLEHCLRIHDPKVIDETCRRLNTTRVFPFLLLLVEKFEKRPTRGATMCQWIKFLMLNHTAYLMTV----------PDVIDKLSTLYQSLDARVKVFPQLHKLSGRLNLVLGQI 580          
BLAST of jgi.p|Trimin1|351669 vs. uniprot
Match: A0A485LGV1_9STRA (Aste57867_21150 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LGV1_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 7.390e-11
Identity = 41/129 (31.78%), Postives = 69/129 (53.49%), Query Frame = 1
Query:   85 AVLKQLLQALHAKDEDLLQRCLSVTDPEIVDGVINRLPRKRVQPLYRLLVEQFEATPARGTSYSVWVHSMLSHHMSHIGGIQGMESAPKSKPPRSGLIELLQKAVDQRLPRLEKLLAVTGRLDLVLSHV 471
            +++  L QAL +KD  LL+ CL V DP+++D    RL   RV P   LLVE+FE  P RG +   W+  ++ +H +++  +          P     +  L +++D R+    +L  ++GRL+LVL  +
Sbjct:  445 SLVSVLEQALQSKDNALLENCLRVHDPKVIDETCRRLNTTRVFPFLLLLVEKFEKRPTRGATMCQWIKYLMLNHTAYLMTV----------PDVIEKLSTLYQSLDARVKVFPQLHKLSGRLNLVLGQI 563          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351669 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YGP9_9STRA5.910e-11299.54Utp12 domain-containing protein n=1 Tax=Tribonema ... [more]
A0A8H7PZ10_9FUNG2.160e-1432.41Utp12 domain-containing protein n=1 Tax=Umbelopsis... [more]
A0A8H8DIE3_9FUNG8.100e-1431.52Dip2/Utp12 family-domain-containing protein (Fragm... [more]
A0A0L0GD02_9EUKA4.360e-1333.78Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
A0A8H7UN63_MORIS2.030e-1232.86Utp12 domain-containing protein n=1 Tax=Mortierell... [more]
A0A6A4ZZS5_9STRA7.450e-1230.00Utp12 domain-containing protein (Fragment) n=1 Tax... [more]
A0A7S4NW26_GUITH1.470e-1133.58Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
L1JNT7_GUITC2.290e-1133.58Utp12 domain-containing protein n=3 Tax=Guillardia... [more]
W4H0X9_9STRA4.080e-1130.00Utp12 domain-containing protein n=6 Tax=Aphanomyce... [more]
A0A485LGV1_9STRA7.390e-1131.78Aste57867_21150 protein n=1 Tax=Aphanomyces stella... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_96contigContig_96:387215..389640 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351669|estExt_Genemark1.C_Ctg_960045
BRITEko00000,ko00001,ko03009
KEGG Pathwayko03008,map03008
KEGG koko:K14546
GOsGO:0000462,GO:0000785,GO:0000792,GO:0001650,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0006139,GO:0006355,GO:0006356,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006950,GO:0007154,GO:0008150,GO:0008152,GO:0009267,GO:0009605,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0033553,GO:0033554,GO:0034455,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0042594,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045893,GO:0045935,GO:0045943,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0071496,GO:0071704,GO:0071840,GO:0080090,GO:0090069,GO:0090070,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2000232,GO:2000234,GO:2001141
Preferred nameWDR43
DescriptionWD repeat-containing protein 43
COG categoryS
Max annot lvl33154|Opisthokonta
EggNOG OGsKOG4547@1|root,KOG4547@2759|Eukaryota,38HDH@33154|Opisthokonta
Evalue4.97e-18
Seed ortholog192875.XP_004345644.1
Hectar predicted targeting categoryother localisation
TranscriptId351991
TrackFilteredModels1
ProteinId351669
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351669gene_13070Tribonema minus UTEX_B_3156 geneContig_96 387215..389640 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351669Trimin1|351669|estExt_Genemark1.C_Ctg_960045Tribonema minus UTEX_B_3156 polypeptideContig_96 387275..389640 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13070_4exon_13070_4Tribonema minus UTEX_B_3156 exonContig_96 387215..387561 -
exon_13070_3exon_13070_3Tribonema minus UTEX_B_3156 exonContig_96 388426..388604 -
exon_13070_2exon_13070_2Tribonema minus UTEX_B_3156 exonContig_96 389076..389158 -
exon_13070_1exon_13070_1Tribonema minus UTEX_B_3156 exonContig_96 389533..389640 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_13070UTR3_13070Tribonema minus UTEX_B_3156 three_prime_UTRContig_96 387215..387274 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13070CDS_13070Tribonema minus UTEX_B_3156 CDSContig_96 389533..389640 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13070 ID=mRNA_13070|Name=jgi.p|Trimin1|351669|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=717bp|location=Sequence derived from alignment at Contig_96:387215..389640- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATTTGACAATGCCCGGAATCCTGATGATGCATCTGGCGGCATCAC
CAAGGGCCTGCCGAGTGCTGCTGAAAAGTTGCGAGCTGTGCTGAAGCAGC
TGTTGCAGGCTCTGCATGCCAAGGATGAGGATCTGCTGCAGCGCTGCCTC
AGCGTAACAGACCCCGAGATTGTGGATGGTGTTATCAACAGGCTTCCGCG
GAAGCGCGTCCAACCGCTCTACAGGCTGCTAGTGGAGCAGTTTGAAGCCA
CGCCTGCTCGTGGAACCTCGTACAGCGTCTGGGTGCACTCCATGCTCAGT
CACCACATGAGCCACATTGGTGGCATACAAGGCATGGAAAGCGCGCCTAA
GTCAAAGCCCCCCCGATCAGGCTTGATCGAACTGCTTCAGAAGGCGGTCG
ACCAGCGCCTGCCGCGCCTCGAGAAACTGCTGGCCGTCACTGGCAGACTG
GACCTAGTCCTGAGTCACGTTCCAGCCACCCCTGCAGCTAATGCTGCTGC
AAGTGCCAATTCAGGCAGTGACAGCGGCGGCGGCAGTGAGAGTGACGACG
TAGGCAGGGAAACCGGCGAGGTCAGTGGGCAGGGGGACACTGATGCCGAA
GAAGACGCACAGGACACCGAGAGCGAGGCGTCTGAGGCAGGCAGTGATGC
AGAGTGAAGCATGCAACACCTTGGCGGCAAATGGCTCGCGCATCAGTGAG
CATGGGGTGGTTGGTGC
back to top

protein sequence of jgi.p|Trimin1|351669

>Trimin1|351669|estExt_Genemark1.C_Ctg_960045 ID=Trimin1|351669|estExt_Genemark1.C_Ctg_960045|Name=jgi.p|Trimin1|351669|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=219bp
MAFDNARNPDDASGGITKGLPSAAEKLRAVLKQLLQALHAKDEDLLQRCL
SVTDPEIVDGVINRLPRKRVQPLYRLLVEQFEATPARGTSYSVWVHSMLS
HHMSHIGGIQGMESAPKSKPPRSGLIELLQKAVDQRLPRLEKLLAVTGRL
DLVLSHVPATPAANAAASANSGSDSGGGSESDDVGRETGEVSGQGDTDAE
EDAQDTESEASEAGSDAE*
back to top

mRNA from alignment at Contig_96:387215..389640-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13070 ID=mRNA_13070|Name=jgi.p|Trimin1|351669|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2426bp|location=Sequence derived from alignment at Contig_96:387215..389640- (Tribonema minus UTEX_B_3156 )
ATGGCATTTGACAATGCCCGGAATCCTGATGATGCATCTGGCGGCATCAC CAAGGGCCTGCCGAGTGCTGCTGAAAAGTTGCGAGCTGTGCTGAAGCAGC TGTTGCAGGTGCGGCATCGGAGTTCTTGTCTAGAGGCCTGTGCTTCGGGT TGACACTCTGCGCGTGTGGCATGTGGCGGCTGTAGTGCATCGTCCAAACA CGTTGTCCATCACAGTATGTAGCAGCGCTCCAATAATGCTCCATTTTGAA ATCTGCTGGCTGCACACATCAAAGCTGCAGCACTGTGTTGGGCCAGTGGC ATCACGAGGGCATGATCTATCGTGTCATTGACCTATTGTGAGTACAGATC TGAATGGCAAACGTCGTGCATCCCGCAAGCTCATACATGGTCTACGCCCA CTTCACAAGTGCATTAGTGCTCGCCGGTTTGAGATCTTGGAGTCGAGCTG CATCTAACTTGAATATGCTGCTTGTGTTGCAGGCTCTGCATGCCAAGGAT GAGGATCTGCTGCAGCGCTGCCTCAGCGTAACAGACCCCGAGATTGTGGA TGGTGTTATCAACAGGTGAATTGCCATCTGGACAGCTTTGCAATGTACGC ATTTGCAGTGTGCGCATTGCGCCGTCGATGTGATTGGGAATCATTGTGGC AACTGAGTGCAGGGAGTGCAGTGCAAACGTCCTTCAGGACTCAGTGTTGG CTGCAGACCCATATCTCTGCAGAAGGGCAAGAATTTGTGCATGGCACACG CATGCTCATGGCACGTTGTGTCTGTTGTGGCTCATTGGTTACAGTGGGCT TTGATTAGCGTACCTGGCTGGCAGAAGGCAGATCGACAGTGGTGCTGCAT TGAATGTTTGTCACGTTTACCAGTGTCAGGATGGTAACCTTCATCAATTG TTGCATATGCTTGGCATTCATCCCCTTGACTTTCAATTACTTTGCACTCA AACACCACTGCTTGCCCCACTACAAGTGACAATGAATGCCCTATTTCACC AAATTCACCAAAGGAGATTGTTTGCCTGTTTGACAGGCTTCCGCGGAAGC GCGTCCAACCGCTCTACAGGCTGCTAGTGGAGCAGTTTGAAGCCACGCCT GCTCGTGGAACCTCGTACAGCGTCTGGGTGCACTCCATGCTCAGTCACCA CATGAGCCACATTGGTGGCATACAAGGCATGGAAAGCGCGCCTAAGTCAA AGCCCCCCCGATCAGGTACGCTCTTTGCACGGTCACACGAGGCTGCGTGT GACTGCAGGCTTCTTGCTTTCTTAGTCCGCATGCTGCTGATGACAGCACC GCTGTGCGTGCGGCATTAATGCACTTGTGGGGCTCACACACAAGGTAGAG CGTTGCATCATGTTGCCTCGCCTGCAAGCAAGCGTATCAGGGCACGCACT GTCAAACACCAGCGCTGGCTCTGCTACTGTAGTGCTGACATGGTGTGCAT AGGTTCATGTATAGTAGCAGAAAATGCACAACGGTACTCTGGATGCTCGA TCACCTTTTCTTCTTCAAAATGGTGGCAGTGACACCTTGTCAGCCTGGTA ACCTGCAGCACGTGTACATCCCCTGATTTGTGTGATTTGTCGCGGTAGAC TTCATCTGTCAGTTTAGGTTTGACAGCATATGGCCCTTCCCAGTCTCAGC TCACCAGCGACATCAATGCTGGTGTGATCTCTGCTTTTGTTGAGTCGAAC ATATTAGTTTGCTGGCAAAAATCCTTGGCTTTTGACGAACAACAGTGCGG GTGATATTCTGCGGCATGTGCATCTCCACATGATGATTGAGTGAAGATGC GTCAACCAGAATGGAGGGTTCATTGCGTCCTTCAACTACAGTGTAATTCT GGTGCTGAATGCGCCAACATTTGTGCCGCGTGGGACTGGACCACCATAGA TCATGATGCCAAGCACTGTTGACATGCACATGCAGTTTTTGAGTGTATGA GGTAATGATGTAACTTGAAAAGCACGCTGTGCATACATATCTCTATATTG TTTGTAAATTACATCATGAGACACAGCAGCTCCGTCTGACATTTGTGACT CTATGCCGTCGCCCGCACTGCCATGTCAGGCTTGATCGAACTGCTTCAGA AGGCGGTCGACCAGCGCCTGCCGCGCCTCGAGAAACTGCTGGCCGTCACT GGCAGACTGGACCTAGTCCTGAGTCACGTTCCAGCCACCCCTGCAGCTAA TGCTGCTGCAAGTGCCAATTCAGGCAGTGACAGCGGCGGCGGCAGTGAGA GTGACGACGTAGGCAGGGAAACCGGCGAGGTCAGTGGGCAGGGGGACACT GATGCCGAAGAAGACGCACAGGACACCGAGAGCGAGGCGTCTGAGGCAGG CAGTGATGCAGAGTGAAGCATGCAACACCTTGGCGGCAAATGGCTCGCGC ATCAGTGAGCATGGGGTGGTTGGTGC
back to top

Coding sequence (CDS) from alignment at Contig_96:387215..389640-

>mRNA_13070 ID=mRNA_13070|Name=jgi.p|Trimin1|351669|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=657bp|location=Sequence derived from alignment at Contig_96:387215..389640- (Tribonema minus UTEX_B_3156 )
ATGGCATTTGACAATGCCCGGAATCCTGATGATGCATCTGGCGGCATCAC
CAAGGGCCTGCCGAGTGCTGCTGAAAAGTTGCGAGCTGTGCTGAAGCAGC
TGTTGCAGGCTCTGCATGCCAAGGATGAGGATCTGCTGCAGCGCTGCCTC
AGCGTAACAGACCCCGAGATTGTGGATGGTGTTATCAACAGGCTTCCGCG
GAAGCGCGTCCAACCGCTCTACAGGCTGCTAGTGGAGCAGTTTGAAGCCA
CGCCTGCTCGTGGAACCTCGTACAGCGTCTGGGTGCACTCCATGCTCAGT
CACCACATGAGCCACATTGGTGGCATACAAGGCATGGAAAGCGCGCCTAA
GTCAAAGCCCCCCCGATCAGGCTTGATCGAACTGCTTCAGAAGGCGGTCG
ACCAGCGCCTGCCGCGCCTCGAGAAACTGCTGGCCGTCACTGGCAGACTG
GACCTAGTCCTGAGTCACGTTCCAGCCACCCCTGCAGCTAATGCTGCTGC
AAGTGCCAATTCAGGCAGTGACAGCGGCGGCGGCAGTGAGAGTGACGACG
TAGGCAGGGAAACCGGCGAGGTCAGTGGGCAGGGGGACACTGATGCCGAA
GAAGACGCACAGGACACCGAGAGCGAGGCGTCTGAGGCAGGCAGTGATGC
AGAGTGA
back to top