mRNA_13056 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|172786 vs. uniprot
Match: A0A835YH54_9STRA (MgtC/SapB/SrpB transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH54_9STRA) HSP 1 Score: 244 bits (622), Expect = 1.980e-81 Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 1 Query: 1 LQRRSSQRPAGIRTMALVSLGAATFTLVSAYGFSGGDPGRVAANVASGVGFLGAGTITHPKKRVQGSSEVDADVRGLTTAAAIWIAAGLGMSAGAGMYFTAVCGTAITMVVLRLGDIRAAANKKVSVLSYG 393 LQRRSSQRPAGIRTMALVSLGAATFTLVSAYGFSGGDPGRVAANVASGVGFLGAGTITHPKKRVQGSSEVDADVRGLTTAAAIWIAAGLGMSAGAGMYFTAVCGTAITMVVLRLGDIRAAANKKVSVLSYG Sbjct: 1 LQRRSSQRPAGIRTMALVSLGAATFTLVSAYGFSGGDPGRVAANVASGVGFLGAGTITHPKKRVQGSSEVDADVRGLTTAAAIWIAAGLGMSAGAGMYFTAVCGTAITMVVLRLGDIRAAANKKVSVLSYG 131
BLAST of jgi.p|Trimin1|172786 vs. uniprot
Match: A0A835YXE4_9STRA (MgtC family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXE4_9STRA) HSP 1 Score: 182 bits (462), Expect = 2.890e-56 Identity = 89/126 (70.63%), Postives = 114/126 (90.48%), Query Frame = 1 Query: 1 LQRRSSQRPAGIRTMALVSLGAATFTLVSAYGFSGGDPGRVAANVASGVGFLGAGTITHPKKRVQGSSEVDADVRGLTTAAAIWIAAGLGMSAGAGMYFTAVCGTAITMVVLRLGDIRAAANKKVS 378 ++RR S RPAG+RTM+LV+LGAATFT+VSAYGFS GDPGR+AANVASGVGFLGAGTITHPK+ ++GSS++D+DVRGLTTAAAIWI AGLGM+AGAGM+FTA+ GT IT+ VL++ ++++ ++VS Sbjct: 1 MERRHSHRPAGVRTMSLVALGAATFTIVSAYGFSSGDPGRIAANVASGVGFLGAGTITHPKRYIKGSSDIDSDVRGLTTAAAIWITAGLGMAAGAGMFFTAIAGTVITITVLKMSNLKSVMFRRVS 126
BLAST of jgi.p|Trimin1|172786 vs. uniprot
Match: A0A1F8LUY7_9CHLR (Magnesium transporter MgtC n=1 Tax=Chloroflexi bacterium RBG_13_46_9 TaxID=1797619 RepID=A0A1F8LUY7_9CHLR) HSP 1 Score: 111 bits (278), Expect = 5.180e-29 Identity = 63/124 (50.81%), Postives = 82/124 (66.13%), Query Frame = 1 Query: 1 LQRRSSQRPAGIRTMALVSLGAATFTLVSAYGFSGGDPGRVAANVASGVGFLGAGTITHPKKRVQGSSEVDADVRGLTTAAAIWIAAGLGMSAGAGMYFTAVCGTAITMVVLRLGDIRAAANKK 372 +QR S +PAGIRT+ L+S+GAA F +VS GF+GGDP R+AA V +GVGFLGAG I H V+G LTTAA+IW AG+G++AG G+Y +V TAI +V+L + I NKK Sbjct: 23 VQREWSGKPAGIRTLPLISMGAALFAIVSGIGFTGGDPARIAAGVVTGVGFLGAGAILHRHGGVEG----------LTTAASIWGVAGIGLAAGTGLYLISVVATAIALVILFIPHISPPKNKK 136
BLAST of jgi.p|Trimin1|172786 vs. uniprot
Match: D8LBP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP6_ECTSI) HSP 1 Score: 118 bits (296), Expect = 2.420e-28 Identity = 72/145 (49.66%), Postives = 95/145 (65.52%), Query Frame = 1 Query: 4 QRRSSQRPAGIRTMALVSLGAATFTLVSAYGFSG-GDPGRVAANVASGVGFLGAGTITHPKK-----------RVQGSS----------EVDADVRGLTTAAAIWIAAGLGMSAGAGMYFTAVCGTAITMVVLRLGDIRAAANKK 372 +RR+S RPAG+RTM+LV+LGA TFTLVS GF G D RVAA+VASGVGF+GAG IT K R +G S +VD +V+GLTTA+AIWI AGLGM+ GAG+ F A+ G +T+ +L++ ++ + KK Sbjct: 49 ERRTSHRPAGVRTMSLVALGACTFTLVSQLGFVGKADQARVAASVASGVGFIGAGVITTSGKEASSMRESLNTRGRGGSNFPGTTVSMNDVDGEVKGLTTASAIWITAGLGMACGAGLLFIAMLGAGLTVGILKISEVTTSVQKK 193
BLAST of jgi.p|Trimin1|172786 vs. uniprot
Match: A0A7S1CXC0_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CXC0_CYCTE) HSP 1 Score: 107 bits (268), Expect = 1.120e-26 Identity = 65/117 (55.56%), Postives = 85/117 (72.65%), Query Frame = 1 Query: 4 QRRSSQRPAGIRTMALVSLGAATFTLVSAYGFSGG-DPGRVAANVASGVGFLGAGTITHPKKRVQGSSEVDADVRGLTTAAAIWIAAGLGMSAGAGMYFTAVCGTAITMVVLRLGDI 351 +R S+ AG+RTM+LVSLGAATFT+ S YGF G D R+A++VASGVGF+GAG IT K S V V GLTTAAAIW++A +G+++GAG++ AVC +IT+ +LRLG I Sbjct: 54 ERASTNHSAGVRTMSLVSLGAATFTICSMYGFVGRWDTSRMASSVASGVGFIGAGVITTSNKY---SKNV---VHGLTTAAAIWLSAAVGVASGAGLHIIAVCAASITVSILRLGRI 164
BLAST of jgi.p|Trimin1|172786 vs. uniprot
Match: A0A847FA99_9CHLR (MgtC/SapB family protein n=1 Tax=Dehalococcoidales bacterium TaxID=2026733 RepID=A0A847FA99_9CHLR) HSP 1 Score: 102 bits (255), Expect = 1.290e-25 Identity = 55/111 (49.55%), Postives = 78/111 (70.27%), Query Frame = 1 Query: 4 QRRSSQRPAGIRTMALVSLGAATFTLVSAYGFSGGDPGRVAANVASGVGFLGAGTITHPKKRVQGSSEVDADVRGLTTAAAIWIAAGLGMSAGAGMYFTAVCGTAITMVVL 336 +R + +PAG+R +AL+SLG+A FT VS GF+GGDP R+AA + SG+GF+GAG I H R G V+G+TTA +IW+AAG+G++ GAG+Y+ A+ T I + VL Sbjct: 24 ERWKAGKPAGVRDLALISLGSAIFTAVSLEGFTGGDPSRIAAGIVSGIGFIGAGAILH---RDSGG------VQGITTANSIWLAAGIGLAVGAGLYYIALAATVIALTVL 125
BLAST of jgi.p|Trimin1|172786 vs. uniprot
Match: A0A7S2MLU6_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MLU6_9STRA) HSP 1 Score: 108 bits (269), Expect = 2.400e-25 Identity = 64/133 (48.12%), Postives = 85/133 (63.91%), Query Frame = 1 Query: 1 LQRRSSQRPAGIRTMALVSLGAATFTLVSAYGFSGG---------DPGRVAANVASGVGFLGAGTITHPKKRVQGSSEVDADVRGLTTAAAIWIAAGLGMSAGAGMYFTAVCGTAITMVVLRLGDIRAAANKK 372 L+R +S PAG+RTMALVSLGA FTL S +GF DP R+A+NVASGVGF+GAG IT+ +K G + + V GLTTAAAIW+AA +G+++G G+Y A A T+ +LR ++ A K Sbjct: 58 LERSTSDHPAGVRTMALVSLGACAFTLCSMFGFLAVAASSSAAKLDPSRMASNVASGVGFIGAGVITNNRKS-SGVYDRQSSVNGLTTAAAIWVAAAVGVASGVGLYVVAATAAASTIAILRFSKLKNTAISK 189
BLAST of jgi.p|Trimin1|172786 vs. uniprot
Match: A0A7S3L8G4_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L8G4_9STRA) HSP 1 Score: 106 bits (265), Expect = 2.480e-25 Identity = 60/118 (50.85%), Postives = 82/118 (69.49%), Query Frame = 1 Query: 4 QRRSSQRPAGIRTMALVSLGAATFTLVSAYGFSGG----DPGRVAANVASGVGFLGAGTITHPKKRVQGSSEVDADVRGLTTAAAIWIAAGLGMSAGAGMYFTAVCGTAITMVVLRLG 345 +RR + RPAGIRTMALVSLG+ FT+ SA+ F G D R++A + SGVGFLGAG I +++ + S +V V GLTTAAAIW++A +G++ G +YF A GTA+ +V+LR G Sbjct: 109 ERRQADRPAGIRTMALVSLGSCLFTINSAFAFLDGPMGWDASRISAAIPSGVGFLGAGLIFKQQEKDEESGDVQHVVHGLTTAAAIWLSAAVGVACGGSLYFAATFGTAVMLVLLRFG 226
BLAST of jgi.p|Trimin1|172786 vs. uniprot
Match: A0A3D3WSL7_9CHLR (Magnesium transporter MgtC n=3 Tax=Chloroflexi TaxID=200795 RepID=A0A3D3WSL7_9CHLR) HSP 1 Score: 102 bits (254), Expect = 2.480e-25 Identity = 55/113 (48.67%), Postives = 76/113 (67.26%), Query Frame = 1 Query: 4 QRRSSQRPAGIRTMALVSLGAATFTLVSAYGFSGGDPGRVAANVASGVGFLGAGTITHPKKRVQGSSEVDADVRGLTTAAAIWIAAGLGMSAGAGMYFTAVCGTAITMVVLRL 342 +RRS+++PAG+RT++LV++GAA FT+VSA+GF D RVAA + +GVGFLGAGTI + GLTTAA IW A +GM+ G+GMY + GT + +V+L L Sbjct: 29 ERRSAEKPAGLRTLSLVAVGAALFTVVSAFGFDTADQSRVAAQIVTGVGFLGAGTILRS----------GVTISGLTTAATIWATAAIGMAVGSGMYIASTAGTVLVLVILYL 131
BLAST of jgi.p|Trimin1|172786 vs. uniprot
Match: A0A7S2RQ06_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RQ06_9STRA) HSP 1 Score: 105 bits (261), Expect = 5.620e-25 Identity = 62/120 (51.67%), Postives = 83/120 (69.17%), Query Frame = 1 Query: 4 QRRSSQRPAGIRTMALVSLGAATFTLVSAYGFSGG----DPGRVAANVASGVGFLGAGTITHPKKRVQGSSEVDAD--VRGLTTAAAIWIAAGLGMSAGAGMYFTAVCGTAITMVVLRLG 345 +RR + RPAGIRTMALVSLG+A FT+ SA+ F G D R++A + SGVGFLGAG I + RV G+ +A V GLTTAA++W+AA +G++ G G+YF A TAI +++LR G Sbjct: 96 ERRQADRPAGIRTMALVSLGSALFTICSAFAFVSGSQFWDASRISAAIPSGVGFLGAGIIYKEEVRVGGTETGNASHVVHGLTTAASLWLAAAVGIACGGGLYFPATFCTAIILILLRFG 215 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|172786 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13056 ID=mRNA_13056|Name=jgi.p|Trimin1|172786|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=396bp|location=Sequence derived from alignment at Contig_96:221075..222768+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CTGCAGCGCCGCAGCTCGCAACGACCAGCAGGCATACGCACCATGGCTCTback to top protein sequence of jgi.p|Trimin1|172786 >Trimin1|172786|e_gw1.96.45.1 ID=Trimin1|172786|e_gw1.96.45.1|Name=jgi.p|Trimin1|172786|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=132bp LQRRSSQRPAGIRTMALVSLGAATFTLVSAYGFSGGDPGRVAANVASGVGback to top mRNA from alignment at Contig_96:221075..222768+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_13056 ID=mRNA_13056|Name=jgi.p|Trimin1|172786|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1694bp|location=Sequence derived from alignment at Contig_96:221075..222768+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_96:221075..222768+ >mRNA_13056 ID=mRNA_13056|Name=jgi.p|Trimin1|172786|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=396bp|location=Sequence derived from alignment at Contig_96:221075..222768+ (Tribonema minus UTEX_B_3156 )back to top |