mRNA_13048 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|339470
Unique NamemRNA_13048
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|339470 vs. uniprot
Match: A0A835YJN8_9STRA (LRRcap domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJN8_9STRA)

HSP 1 Score: 455 bits (1171), Expect = 2.820e-156
Identity = 403/403 (100.00%), Postives = 403/403 (100.00%), Query Frame = 1 
Query:    1 MAALAAEANSVLTVDMILSATRKPNLIEVIKLNCFGLGLRDVTILSQLPNVEVLSLSVNEISTLRPFSACAKLRELYLRNNAIADIHEVRHLRHLSQLQSLWLVDNKCASTPGYRLKVLRAVPQLRKLDSEDVTAAERNDAQRDATPAMLAFMAAMEGAAGGALLHVQLPQLREAQXXXXXXXXXXXXXXXXXXXXXGTQQQHAELGRRDWGQEQVQXXXXXXXXXXXXXXRGAPAVATNGIGLGGGTARAGSTVDAGAPNLSGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDADVTRVETAVLLLLRELGAPALGRVRARCAELLLLARNAAER 1209
            MAALAAEANSVLTVDMILSATRKPNLIEVIKLNCFGLGLRDVTILSQLPNVEVLSLSVNEISTLRPFSACAKLRELYLRNNAIADIHEVRHLRHLSQLQSLWLVDNKCASTPGYRLKVLRAVPQLRKLDSEDVTAAERNDAQRDATPAMLAFMAAMEGAAGGALLHVQLPQLREAQXXXXXXXXXXXXXXXXXXXXXGTQQQHAELGRRDWGQEQVQXXXXXXXXXXXXXXRGAPAVATNGIGLGGGTARAGSTVDAGAPNLSGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDADVTRVETAVLLLLRELGAPALGRVRARCAELLLLARNAAER
Sbjct:    1 MAALAAEANSVLTVDMILSATRKPNLIEVIKLNCFGLGLRDVTILSQLPNVEVLSLSVNEISTLRPFSACAKLRELYLRNNAIADIHEVRHLRHLSQLQSLWLVDNKCASTPGYRLKVLRAVPQLRKLDSEDVTAAERNDAQRDATPAMLAFMAAMEGAAGGALLHVQLPQLREAQXXXXXXXXXXXXXXXXXXXXXGTQQQHAELGRRDWGQEQVQXXXXXXXXXXXXXXRGAPAVATNGIGLGGGTARAGSTVDAGAPNLSGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDADVTRVETAVLLLLRELGAPALGRVRARCAELLLLARNAAER 403
[Close]
BLAST of jgi.p|Trimin1|339470 vs. uniprot
Match: A0A1B6JJ72_9HEMI (Uncharacterized protein (Fragment) n=3 Tax=Homalodisca TaxID=139475 RepID=A0A1B6JJ72_9HEMI)

HSP 1 Score: 136 bits (343), Expect = 3.380e-34
Identity = 70/135 (51.85%), Postives = 96/135 (71.11%), Query Frame = 1 
Query:   34 LTVDMILSATRKPNLIEVIKLNCFGLGLRDVTILSQLPNVEVLSLSVNEISTLRPFSACAKLRELYLRNNAIADIHEVRHLRHLSQLQSLWLVDNKCASTPGYRLKVLRAVPQLRKLDSEDVTAAERNDAQRDAT 438
            LT +M+ + TR+ NL  V KLNC+G  L+DV+++ +LPNVE LSLSVN I +L  F  C KL+ L++R N I D++++ +L+ L  L +LWL +N CAS+PGYRL VL+A+P L KLD   VTA ER +AQR  T
Sbjct:    4 LTEEMVHARTRQSNLSAVSKLNCWGSELQDVSLVRKLPNVETLSLSVNRIRSLSDFQHCKKLKHLFVRKNDIRDLNQICYLQRLPALSTLWLAENPCASSPGYRLAVLKALPNLEKLDDVAVTAEERTEAQRQGT 138
[Close]
BLAST of jgi.p|Trimin1|339470 vs. uniprot
Match: A0A1R2AYL3_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2AYL3_9CILI)

HSP 1 Score: 134 bits (338), Expect = 1.030e-33
Identity = 69/135 (51.11%), Postives = 95/135 (70.37%), Query Frame = 1 
Query:   25 NSVLTVDMILSATRKPNLIEVIKLNCFGLGLRDVTILSQLPNVEVLSLSVNEISTLRPFSACAKLRELYLRNNAIADIHEVRHLRHLSQLQSLWLVDNKCASTPGYRLKVLRAVPQLRKLDSEDVTAAERNDAQR 429
            + VLT D++L  T+  NL ++  LN +G  + DV+IL  +PN+E+LSLSVN+ISTL+ FS C KL ELYLR N I D+ E+R+L++L  L+ LWL +N CA TP YR  VL  +P L KLD++ VTA E+N A +
Sbjct:    2 SKVLTGDLVLLRTKASNLDQIKNLNLWGNDIEDVSILKDMPNIEILSLSVNKISTLKSFSYCKKLSELYLRKNLIQDLSEIRYLQNLPNLKVLWLWENPCAETPNYRENVLSVLPNLVKLDNQAVTAEEKNQASK 136
[Close]
BLAST of jgi.p|Trimin1|339470 vs. uniprot
Match: UPI00094ED5D4 (protein C21orf2 homolog n=1 Tax=Dendroctonus ponderosae TaxID=77166 RepID=UPI00094ED5D4)

HSP 1 Score: 130 bits (328), Expect = 5.500e-33
Identity = 64/132 (48.48%), Postives = 99/132 (75.00%), Query Frame = 1 
Query:   34 LTVDMILSATRKPNLIEVIKLNCFGLGLRDVTILSQLPNVEVLSLSVNEISTLRPFSACAKLRELYLRNNAIADIHEVRHLRHLSQLQSLWLVDNKCASTPGYRLKVLRAVPQLRKLDSEDVTAAERNDAQR 429
            LT +M+++ T+  +L ++ +LNC+G  L DV++L ++PNVEVLSLS+N+I TL  F  C +L ELY+R N I ++HEV +L++L+ L++LWL +N C +T GYRL V++A+PQL+KLD+  +T  E  D+QR
Sbjct:    5 LTEEMVIARTKISDLSKIKRLNCWGSELVDVSLLRRIPNVEVLSLSINKIDTLVDFQFCKRLEELYIRQNDIRNLHEVVYLQNLTNLKNLWLGENPCCNTDGYRLAVIKALPQLQKLDNVAITQEELRDSQR 136
[Close]
BLAST of jgi.p|Trimin1|339470 vs. uniprot
Match: A0A2W1BES2_HELAM (LRRcap domain-containing protein n=16 Tax=Helicoverpa TaxID=7112 RepID=A0A2W1BES2_HELAM)

HSP 1 Score: 135 bits (341), Expect = 1.050e-32
Identity = 67/132 (50.76%), Postives = 95/132 (71.97%), Query Frame = 1 
Query:   34 LTVDMILSATRKPNLIEVIKLNCFGLGLRDVTILSQLPNVEVLSLSVNEISTLRPFSACAKLRELYLRNNAIADIHEVRHLRHLSQLQSLWLVDNKCASTPGYRLKVLRAVPQLRKLDSEDVTAAERNDAQR 429
            LT +M+++ +++ +L  + KLNC+G  L DV++L ++PNVEVL+LS+N+I TL  F+ C +LRELY+R N I+D+HE+RHLRHL  L SLWL +N C S P YR+ VLR +P L KLD+  V   E  +A R
Sbjct:    4 LTEEMVIARSKQSDLSAIKKLNCWGAELGDVSLLRRMPNVEVLALSINKIRTLGDFAGCRRLRELYVRKNEISDLHEIRHLRHLPDLTSLWLDENPCTSHPQYRMTVLRNLPNLEKLDNVPVQPDEVQEAMR 135
[Close]
BLAST of jgi.p|Trimin1|339470 vs. uniprot
Match: A0A834IKK3_RHYFE (LRRcap domain-containing protein n=1 Tax=Rhynchophorus ferrugineus TaxID=354439 RepID=A0A834IKK3_RHYFE)

HSP 1 Score: 131 bits (329), Expect = 1.170e-32
Identity = 66/133 (49.62%), Postives = 101/133 (75.94%), Query Frame = 1 
Query:   34 LTVDMILSATRKPNLIEVIKLNCFGLGLRDVTILSQLPNVEVLSLSVNEISTLRPFSACAKLRELYLRNNAIADIHEVRHLRHLSQLQSLWLVDNKCASTPGYRLKVLRAVPQLRKLDSEDVTAAERNDAQRD 432
            LT +M+++ T+  +L +V +LNC+G  L D+++L ++PNVEVLSLS+N+I++L  F  C +L ELY+R N I D++EV +L++LS L++LWL +N C++T GYR  VL+A+PQL+KLD+  VT  E  DAQR+
Sbjct:    5 LTEEMVIARTKISDLSKVKRLNCWGSELVDISLLRKIPNVEVLSLSINKINSLADFQYCKRLEELYIRQNDIRDLNEVVYLQNLSNLKNLWLGENPCSNTEGYRRAVLKALPQLQKLDNIAVTQEELRDAQRN 137
[Close]
BLAST of jgi.p|Trimin1|339470 vs. uniprot
Match: A0A8N7WGS7_SPOFR (uncharacterized protein F09G8.5-like isoform X1 n=9 Tax=Spodoptera TaxID=7106 RepID=A0A8N7WGS7_SPOFR)

HSP 1 Score: 134 bits (337), Expect = 4.790e-32
Identity = 66/132 (50.00%), Postives = 95/132 (71.97%), Query Frame = 1 
Query:   34 LTVDMILSATRKPNLIEVIKLNCFGLGLRDVTILSQLPNVEVLSLSVNEISTLRPFSACAKLRELYLRNNAIADIHEVRHLRHLSQLQSLWLVDNKCASTPGYRLKVLRAVPQLRKLDSEDVTAAERNDAQR 429
            LT +M+++ +++ +L  + KLNC+G  L DV++L ++PNVEVL+LS+N+I TL  F+ C +LRELY+R N I+D+HE+RHLR L +L SLWL +N C S P YR+ VLR +P L KLD+  V   E  +A R
Sbjct:    4 LTEEMVIARSKQSDLTAIKKLNCWGAELGDVSLLRRMPNVEVLALSINKIRTLGDFAGCRRLRELYVRKNEISDLHEIRHLRRLPELTSLWLDENPCTSQPHYRMTVLRNLPNLEKLDNVPVQPDEVQEAMR 135
[Close]
BLAST of jgi.p|Trimin1|339470 vs. uniprot
Match: UPI00077F8FC8 (cilia- and flagella-associated protein 410 n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=UPI00077F8FC8)

HSP 1 Score: 133 bits (334), Expect = 1.140e-31
Identity = 70/136 (51.47%), Postives = 95/136 (69.85%), Query Frame = 1 
Query:   34 LTVDMILSATRKPNLIEVIKLNCFGLGLRDVTILSQLPNVEVLSLSVNEISTLRPFSACAKLRELYLRNNAIADIHEVRHLRHLSQLQSLWLVDNKCASTPGYRLKVLRAVPQLRKLDSEDVTAAERNDAQRDATP 441
            LT   +L+ TR  +L  V KLN +G  L DV+I+ +LPNVEVLSLSVN IS+L  FS C  L+ELY+R N IA++ E+RHLR L +L++LWL DN CA    YRL V+RA+PQL+KLD+  +   E+  A++  +P
Sbjct:    4 LTEHTVLARTRAQDLRSVRKLNAWGSELTDVSIVKKLPNVEVLSLSVNSISSLEDFSHCDNLQELYIRKNNIAELSEIRHLRDLPKLRNLWLADNPCAECSDYRLTVIRALPQLQKLDNMPIRPDEKESAEKHGSP 139
[Close]
BLAST of jgi.p|Trimin1|339470 vs. uniprot
Match: A0A5J4YH61_9CHLO (Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YH61_9CHLO)

HSP 1 Score: 130 bits (328), Expect = 1.450e-31
Identity = 75/139 (53.96%), Postives = 97/139 (69.78%), Query Frame = 1 
Query:   34 LTVDMILSATRKPNLIEVIKLNCFGLGLRDVTILSQLPNVEVLSLSVNEISTLRPFSACAKLRELYLRNNAIADIHEVRHLRHLSQLQSLWLVDNKCASTPGYRLKVLRAVPQLRKLDSEDVTAAERNDAQ--RDATPA 444
            LT   +   TR   L +V  LNC+G  L DV+ILSQ+PNVEVLSLSVN+ISTL+ F+ C KL+ELYLR N +A++ EV+ L +L  L+ L L DN CA  P YR KVL+ +P+L KLD++DVT  E+ DA+   DAT A
Sbjct:   15 LTEQTVKGKTRVXRLSDVKSLNCWGQDLADVSILSQMPNVEVLSLSVNQISTLKDFAQCLKLQELYLRKNEVAELAEVQWLVNLPDLRVLCLSDNPCADIPKYRQKVLQYLPKLTKLDNDDVTDDEKRDAEIKADATEA 153
[Close]
BLAST of jgi.p|Trimin1|339470 vs. uniprot
Match: A0A1R2AM53_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2AM53_9CILI)

HSP 1 Score: 129 bits (323), Expect = 1.450e-31
Identity = 68/135 (50.37%), Postives = 94/135 (69.63%), Query Frame = 1 
Query:   25 NSVLTVDMILSATRKPNLIEVIKLNCFGLGLRDVTILSQLPNVEVLSLSVNEISTLRPFSACAKLRELYLRNNAIADIHEVRHLRHLSQLQSLWLVDNKCASTPGYRLKVLRAVPQLRKLDSEDVTAAERNDAQR 429
            + VLT ++IL  T+  NL ++  LN +G  + +VTIL ++PN+E+LSLSVN+ISTL+PFS C KL ELYLR N I D+ E+R+L+ L  L+ LWL +N CA  P YR  VL A+P L KLD++ VT  E+  A +
Sbjct:    2 SKVLTEEVILLRTKVSNLEQIKNLNLWGNEIENVTILKEMPNIEILSLSVNKISTLKPFSYCKKLTELYLRKNLIQDLSEIRYLQGLPNLKVLWLWENPCAEIPNYREAVLSALPNLVKLDNQAVTPEEKAQASK 136
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|339470 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YJN8_9STRA2.820e-156100.00LRRcap domain-containing protein n=1 Tax=Tribonema... [more]
A0A1B6JJ72_9HEMI3.380e-3451.85Uncharacterized protein (Fragment) n=3 Tax=Homalod... [more]
A0A1R2AYL3_9CILI1.030e-3351.11Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]
UPI00094ED5D45.500e-3348.48protein C21orf2 homolog n=1 Tax=Dendroctonus ponde... [more]
A0A2W1BES2_HELAM1.050e-3250.76LRRcap domain-containing protein n=16 Tax=Helicove... [more]
A0A834IKK3_RHYFE1.170e-3249.62LRRcap domain-containing protein n=1 Tax=Rhynchoph... [more]
A0A8N7WGS7_SPOFR4.790e-3250.00uncharacterized protein F09G8.5-like isoform X1 n=... [more]
UPI00077F8FC81.140e-3151.47cilia- and flagella-associated protein 410 n=1 Tax... [more]
A0A5J4YH61_9CHLO1.450e-3153.96Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2... [more]
A0A1R2AM53_9CILI1.450e-3150.37Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_96contigContig_96:142768..146555 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|339470|MIX48233_26_58
BRITEko00000,ko03036
KEGG koko:K16532
Preferred namecep72
DescriptionDNA damage response, detection of DNA damage
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG2123@1|root,KOG2123@2759|Eukaryota
Evalue1.56e-31
Seed ortholog5722.XP_001308120.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDynein light chain flagellar outer dynein arm light chain LC1
Ec32 orthologEc-01_008270.1
TranscriptId339792
TrackFilteredModels1
ProteinId339470
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|339470gene_13048Tribonema minus UTEX_B_3156 geneContig_96 142768..146555 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|339470Trimin1|339470|MIX48233_26_58Tribonema minus UTEX_B_3156 polypeptideContig_96 142768..146555 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13048_5exon_13048_5Tribonema minus UTEX_B_3156 exonContig_96 142768..143126 -
exon_13048_4exon_13048_4Tribonema minus UTEX_B_3156 exonContig_96 144164..144687 -
exon_13048_3exon_13048_3Tribonema minus UTEX_B_3156 exonContig_96 145600..145664 -
exon_13048_2exon_13048_2Tribonema minus UTEX_B_3156 exonContig_96 146083..146262 -
exon_13048_1exon_13048_1Tribonema minus UTEX_B_3156 exonContig_96 146472..146555 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13048CDS_13048Tribonema minus UTEX_B_3156 CDSContig_96 146472..146555 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13048 ID=mRNA_13048|Name=jgi.p|Trimin1|339470|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1212bp|location=Sequence derived from alignment at Contig_96:142768..146555- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGCACTCGCAGCGGAAGCAAACTCAGTGCTCACTGTGGACATGAT
TTTGTCGGCAACTCGGAAACCGAATCTTATAGAGGTGATAAAGCTAAACT
GCTTCGGGCTGGGCTTGCGGGACGTCACCATACTTTCACAGCTCCCCAAT
GTGGAGGTGCTGTCTCTGAGCGTCAACGAGATCTCCACTCTGCGGCCTTT
CTCTGCGTGCGCCAAGCTCAGGGAGCTGTACTTGCGCAACAATGCGATCG
CCGACATACATGAGGTGCGCCACCTGCGCCATCTCAGTCAACTGCAGTCG
CTCTGGCTGGTGGACAACAAGTGTGCAAGCACGCCCGGCTACCGGCTCAA
GGTCCTACGCGCCGTGCCGCAGCTGCGCAAGCTGGACAGTGAGGACGTGA
CTGCTGCGGAGCGCAATGACGCGCAGCGCGACGCGACCCCAGCGATGCTG
GCGTTCATGGCGGCGATGGAAGGCGCAGCAGGTGGAGCGCTGCTGCACGT
GCAGTTACCGCAGCTGCGGGAGGCGCAGCAGCAGCGGCGGCAGCGCGCGG
CAGCAGCAGCGGCGGCAGCAGCAGCAGCAGCAGCGGCAGATGGCACGCAG
CAGCAGCATGCGGAGCTGGGGAGGCGTGACTGGGGGCAGGAGCAAGTGCA
GCAGCAGCCGCTGCCGCCGCCGCCGCAGCAGCAGCAGGAGCAGCGGGGGG
CGCCTGCGGTTGCCACCAATGGCATTGGGCTTGGGGGGGGCACTGCACGT
GCAGGGAGCACGGTAGATGCTGGTGCACCGAATCTGAGCGGTGCTGCCGC
TGCTGCCGTCAGGGTAGTGGGTGGGGCTGCCACTGATGACGGGCATGACT
CAGGCGCAGACCCTGCGGAGGCAGCGGCAGCAGCGCCCCCAACGCTCAGC
ACTCCTGTGCCGCCAACCGCCAACAACAACGCGCCGGCGGCACCACCTGC
CCCGCAGCAGCCAGCGGTCGCCACGCCGCCCGAAGCCGCTGCCGGCAGCA
GCAGCAGTGGCAACGGCGGCGGCAGTGGCGGCGGCAGCAGCGGTGATGGC
GGCAGCAGCAGCAGCAGCGGCGGCGGCGGCGACGCTGATGTGACGCGCGT
GGAGACTGCAGTGCTGCTGCTGCTGCGTGAGCTGGGTGCGCCGGCGCTCG
GGCGCGTGCGCGCGCGCTGCGCAGAGCTGCTGCTGCTGGCCCGCAACGCC
GCGGAGCGCTGA
back to top

protein sequence of jgi.p|Trimin1|339470

>Trimin1|339470|MIX48233_26_58 ID=Trimin1|339470|MIX48233_26_58|Name=jgi.p|Trimin1|339470|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=404bp
MAALAAEANSVLTVDMILSATRKPNLIEVIKLNCFGLGLRDVTILSQLPN
VEVLSLSVNEISTLRPFSACAKLRELYLRNNAIADIHEVRHLRHLSQLQS
LWLVDNKCASTPGYRLKVLRAVPQLRKLDSEDVTAAERNDAQRDATPAML
AFMAAMEGAAGGALLHVQLPQLREAQQQRRQRAAAAAAAAAAAAAADGTQ
QQHAELGRRDWGQEQVQQQPLPPPPQQQQEQRGAPAVATNGIGLGGGTAR
AGSTVDAGAPNLSGAAAAAVRVVGGAATDDGHDSGADPAEAAAAAPPTLS
TPVPPTANNNAPAAPPAPQQPAVATPPEAAAGSSSSGNGGGSGGGSSGDG
GSSSSSGGGGDADVTRVETAVLLLLRELGAPALGRVRARCAELLLLARNA
AER*
back to top

mRNA from alignment at Contig_96:142768..146555-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13048 ID=mRNA_13048|Name=jgi.p|Trimin1|339470|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3788bp|location=Sequence derived from alignment at Contig_96:142768..146555- (Tribonema minus UTEX_B_3156 )
ATGGCGGCACTCGCAGCGGAAGCAAACTCAGTGCTCACTGTGGACATGAT
TTTGTCGGCAACTCGGAAACCGAATCTTATAGAGGTGAGTGTTGGCTCCG
CGTCGCCTGACGTCCTTGGCACAAAGGCACTCCGCATTTGCTTTTGCGAC
TAACTTGAAGTCGGATTGGCTCATGCGCTGCAGCATCCCCTCTCAATCCG
CAACGACAAACACCGCGAGCATCATATCTATACAGTAACCGGTAAAGCCC
CACCTGCATGTCACTTGACCTCGTGCTTTTGTGGTCAGCGCAGGTGATAA
AGCTAAACTGCTTCGGGCTGGGCTTGCGGGACGTCACCATACTTTCACAG
CTCCCCAATGTGGAGGTGCTGTCTCTGAGCGTCAACGAGATCTCCACTCT
GCGGCCTTTCTCTGCGTGCGCCAAGCTCAGGGAGCTGTACTTGCGCAACA
ATGCGATCGCCGACATACATGAGGTATGTACACAGAAGTCTTGCGACTAG
TGTGGATATCGTGGCACTGTTTGACTCGCGGCCGATTGCCGCAGCAGCGG
CAACCACAATTATTGGTAGAAGGCACTTTCGGAAACCACACCTTGTCACC
TAGAGCTCTACGCTATTGTGATTCGTTTCCGTGTATGCATGCTCAGTCTG
TTACGCCTGATGGCGGTTACGGAAACTGTCCACCGACTGCGCTGGGGCAC
CCTCATTGTTTGCATCGCACAGCAGCACGCAGCACTGCGCCATCCAGCTC
TGTCATTGATTGTTTTCTGTGCTATCTATCCGCTTGTTTGTGACTTGTCT
CCGTCTGTTGCCGATGTTGCATCACGCTCGGCCACGAAACTTCACTCTGC
ACCTGTGTCATGTTGCTGCTGCCATGCATGGCCCGTGACAGGTGCGCCAC
CTGCGCCATCTCAGTCAACTGCAGTCGCTCTGGCTGGTGGACAACAAGTG
TGCAAGGTCAGTGAGGAGTGGAAGACTGAAAGCTATCAGTGTTCAGCAGT
ATACTGGGTTTGCAACGAGAAAGGCCTTATAGAACCACTACTGCACAACA
TGGTTCAAACACTAATATCTTGCTCTTTGCAGCACACGAGGCGCTTATTA
GTAGAAGTTCATTATGGAAACGAATCGAATGATCGTAGAGCTCTAGGTGA
CAAAGGATGGTTAGCCGCAAGTGCCTTCCACCAATAATCGTGGTCGCCGC
TGTTGCAGTCATTGGCCACGAGTCAAACAGTGCCATCATATCCACAGGTC
AAAAGACTTCTGTGCGCGAGCTTTGTAGCGTTTGAGGGCATGGGTGTTCA
GTATGGAAAGGTCTCACGTGTTCGCTGGGCCAGCTCCAGCTGGTAGCCCA
ACACAGGAGGTGCAGCAGCTATTGACAGCGCTCTTGAATGCGCGTAGTGC
AGAAGATGAAGTTTTGAACCATCCGTGCGGCGACACGGAGGCTCCAGTTA
TTATTATATTGGGCAGAGCTCAATTGCAGCTTCACTTCCCATCTTGCACA
GCAGCTTAGCTGATGTGCATCCCTCATGAGCGGTCGGCAGTAAGCGCTGA
ACGGGCGCAGCGCATTCATCTGAATAGCATCGCTTCCGCGCATGCACGTT
GCATGCAAAGTGTAGAGGGGAACAAAGGCACATACATGGGTTGCTCAACA
CGGAGCCACCGGCACAATGTCGGCCCACGCAGCGAAGCGGTGCGTCAGTA
CGGCAGCCACAGCGAAACACGCGCAATAATTTCACAGCCTGCTTTCGACA
TGCATTTAGTGCTGATGCGTACATTCCGACGCTGCTGCTGCTGCTGATGA
CGATGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGATGCTGTTGCTGCCG
CTGCTGCCACGGGCGCAGCACGCCCGGCTACCGGCTCAAGGTCCTACGCG
CCGTGCCGCAGCTGCGCAAGCTGGACAGTGAGGACGTGACTGCTGCGGAG
CGCAATGACGCGCAGCGCGACGCGACCCCAGCGATGCTGGCGTTCATGGC
GGCGATGGAAGGCGCAGCAGGTGGAGCGCTGCTGCACGTGCAGTTACCGC
AGCTGCGGGAGGCGCAGCAGCAGCGGCGGCAGCGCGCGGCAGCAGCAGCG
GCGGCAGCAGCAGCAGCAGCAGCGGCAGATGGCACGCAGCAGCAGCATGC
GGAGCTGGGGAGGCGTGACTGGGGGCAGGAGCAAGTGCAGCAGCAGCCGC
TGCCGCCGCCGCCGCAGCAGCAGCAGGAGCAGCGGGGGGCGCCTGCGGTT
GCCACCAATGGCATTGGGCTTGGGGGGGGCACTGCACGTGCAGGGAGCAC
GGTAGATGCTGGTGCACCGAATCTGAGCGGTGCTGCCGCTGCTGCCGTCA
GGGTAGTGGGTGGGGCTGCCACTGATGACGGGCATGACTCAGGTACGCAG
ATGCAACATGAGTGAACCCCTTCATGTACTCATAATGGACCCATTGTGTA
CTCACTGTGTACTCGCCATGGACTCGTCATGTCATGGAACCATCATGAAC
TCAGGTTGACGACGCAAGCACGTTGCCTTGGGGCAGGGTGCATGCGCCGC
TGCTGCAGGTACAGGATGCCGCCAGCATGCTTAACTATTTGGTGAACACT
CATCCTTTATCACAGCAATAGGTGATTTCACACGCCTGGATTCACAAGGA
AATGTAGCACGTCCAGTCTCCCGCACAGCCGTTCTCACTGAGCAACGCCA
GCAGCTTGCATGCTTTAGGCGTACAACAGTGCCGCCAACACACTTTATCA
AGTGCCCAGAAACCATCAATTCTGACTTTTCAACTGACATGCGCGTTGAA
GACAGGAGCTGCGAGTCAAGTCACCGCCGCGACGCTACTTCACCCCACCC
CATGATACGCTGCGTATGCACATGGCGCTGTCACCAAGGCAGCATCCAGC
AAGGCCGGTCTCCCGCATGATGGTGCCCACTGGCGGTCACCAGAAAAAGC
ATACTGCTCTGCTTGAAGTTGAACTTGCCCCGCGCGGCTCACCCAGGCAC
CACGGCGTACGCCGTCGCATTGCAAATTATGAAAGTTCACAAAAGCCTGA
TAAAGTGATTGAATACATGTTAAAAGCTAGTCCAGGCAAAAACAATCAAA
ACTTTTAATATTCTACTAGGATCGTTGATTTCATATGTTATAATATGGTT
GTGACTAGCGCCGATACGTGCCGGTGCATCACTCACTAATTGGTGAATTC
TCATCCACTCTCACGGCGCCAAGTAGGTGATTTCACTCGCGTGGATTCGT
GAGGAAGCATACCCGATCCGGTTTCTTGCGCAGCCATGCACACTCAGCAA
CACCAGAAGCTGGCATGCAGCTCTGCTAATGCTGAGATTGCCCCGCGCGG
CGCACTTAGGCGATACTGCATACGCCGTTGCAGCGCTGACACAGTTATGT
TCTGGTGTACTGCTCTGCAGTGCCCGCAGGCGCAGACCCTGCGGAGGCAG
CGGCAGCAGCGCCCCCAACGCTCAGCACTCCTGTGCCGCCAACCGCCAAC
AACAACGCGCCGGCGGCACCACCTGCCCCGCAGCAGCCAGCGGTCGCCAC
GCCGCCCGAAGCCGCTGCCGGCAGCAGCAGCAGTGGCAACGGCGGCGGCA
GTGGCGGCGGCAGCAGCGGTGATGGCGGCAGCAGCAGCAGCAGCGGCGGC
GGCGGCGACGCTGATGTGACGCGCGTGGAGACTGCAGTGCTGCTGCTGCT
GCGTGAGCTGGGTGCGCCGGCGCTCGGGCGCGTGCGCGCGCGCTGCGCAG
AGCTGCTGCTGCTGGCCCGCAACGCCGCGGAGCGCTGA
back to top

Coding sequence (CDS) from alignment at Contig_96:142768..146555-

>mRNA_13048 ID=mRNA_13048|Name=jgi.p|Trimin1|339470|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1212bp|location=Sequence derived from alignment at Contig_96:142768..146555- (Tribonema minus UTEX_B_3156 )
ATGGCGGCACTCGCAGCGGAAGCAAACTCAGTGCTCACTGTGGACATGAT
TTTGTCGGCAACTCGGAAACCGAATCTTATAGAGGTGATAAAGCTAAACT
GCTTCGGGCTGGGCTTGCGGGACGTCACCATACTTTCACAGCTCCCCAAT
GTGGAGGTGCTGTCTCTGAGCGTCAACGAGATCTCCACTCTGCGGCCTTT
CTCTGCGTGCGCCAAGCTCAGGGAGCTGTACTTGCGCAACAATGCGATCG
CCGACATACATGAGGTGCGCCACCTGCGCCATCTCAGTCAACTGCAGTCG
CTCTGGCTGGTGGACAACAAGTGTGCAAGCACGCCCGGCTACCGGCTCAA
GGTCCTACGCGCCGTGCCGCAGCTGCGCAAGCTGGACAGTGAGGACGTGA
CTGCTGCGGAGCGCAATGACGCGCAGCGCGACGCGACCCCAGCGATGCTG
GCGTTCATGGCGGCGATGGAAGGCGCAGCAGGTGGAGCGCTGCTGCACGT
GCAGTTACCGCAGCTGCGGGAGGCGCAGCAGCAGCGGCGGCAGCGCGCGG
CAGCAGCAGCGGCGGCAGCAGCAGCAGCAGCAGCGGCAGATGGCACGCAG
CAGCAGCATGCGGAGCTGGGGAGGCGTGACTGGGGGCAGGAGCAAGTGCA
GCAGCAGCCGCTGCCGCCGCCGCCGCAGCAGCAGCAGGAGCAGCGGGGGG
CGCCTGCGGTTGCCACCAATGGCATTGGGCTTGGGGGGGGCACTGCACGT
GCAGGGAGCACGGTAGATGCTGGTGCACCGAATCTGAGCGGTGCTGCCGC
TGCTGCCGTCAGGGTAGTGGGTGGGGCTGCCACTGATGACGGGCATGACT
CAGGCGCAGACCCTGCGGAGGCAGCGGCAGCAGCGCCCCCAACGCTCAGC
ACTCCTGTGCCGCCAACCGCCAACAACAACGCGCCGGCGGCACCACCTGC
CCCGCAGCAGCCAGCGGTCGCCACGCCGCCCGAAGCCGCTGCCGGCAGCA
GCAGCAGTGGCAACGGCGGCGGCAGTGGCGGCGGCAGCAGCGGTGATGGC
GGCAGCAGCAGCAGCAGCGGCGGCGGCGGCGACGCTGATGTGACGCGCGT
GGAGACTGCAGTGCTGCTGCTGCTGCGTGAGCTGGGTGCGCCGGCGCTCG
GGCGCGTGCGCGCGCGCTGCGCAGAGCTGCTGCTGCTGGCCCGCAACGCC
GCGGAGCGCTGA
back to top