mRNA_13046 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|172765
Unique NamemRNA_13046
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|172765 vs. uniprot
Match: A0A836CJT3_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJT3_9STRA)

HSP 1 Score: 322 bits (824), Expect = 7.180e-108
Identity = 196/282 (69.50%), Postives = 208/282 (73.76%), Query Frame = 1 
Query:   10 QKHGVDVGQDTSGRDGHVAQQLVELLV-----LDVAGHDARLLVVARGVACELQNLRAQVLEHGRQVDGGARSHVLGVAAHLEEAAQTRHGELQSRCGFSRGGGLMHGVPLSAAMHASRLSEYQLPFFSQAAARKSCALRRCGGERVALVQNGSSAAIHISILRMAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSSA 840
            Q+H VDVGQ T+ RDGHVAQQLVELLV     LDVAG+DA LLVVA GVA ELQ+L AQVLEH RQVDGGA +H LGVAA LEEAA+T HGELQ   G    G  + G+  +AA+  +       P F+                                   MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSSA
Sbjct:    7 QEHRVDVGQHTTRRDGHVAQQLVELLVVAHRQLDVAGYDAGLLVVAGGVAGELQDLGAQVLEHRRQVDGGAGAHALGVAALLEEAAETGHGELQPCLGGL--GDTLFGLRATAALSFASHCTKHSPTFT-----------------------------------MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSSA 251
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BLAST of jgi.p|Trimin1|172765 vs. uniprot
Match: K0SNH7_THAOC (Histone H2B n=3 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SNH7_THAOC)

HSP 1 Score: 249 bits (636), Expect = 1.510e-78
Identity = 168/299 (56.19%), Postives = 199/299 (66.56%), Query Frame = 1 
Query:    1 LLGQKHGVDVGQDTSGRDGHVAQQLVELLVL-----DVAGHDARLLVVARGVACELQNLRAQVLEHGRQVDGGARSHVLGVAAHLEEAAQTRHGELQSRCGFSRGGGLMHGVPLSAAMHA-SRLSEYQLPF--FSQAAAR-------KSCALRRCGGERVALVQNGSSAAIHI----SILRMAKIPSKKA-AKAPKKAADGKKKKAK-RTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTS 834
            LLGQ+ GVDVGQ+++  DG  +++LVELLV+     DVAG D  LLVVA GV+ EL++L A+VLE G +VDG   SH  GV A  E  + T  GEL+   G   GG L+    LS + H  SR+     PF  F + A +       +S    R G    A+     S  + I    SI  MAK PSKKA +K    AA G KK++K R ESY +YIYKVLKQVHPDTGISK+GMSIMNSFIND+FERIA EAGKL  YNKK+TLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKF+S
Sbjct:   10 LLGQEDGVDVGQNSAAGDGDSSKELVELLVVLDGQGDVAGDDTCLLVVAGGVSGELEDLGAEVLEDGGEVDGRTGSHAGGVLALAEVTSDTTDGELKPGLGRRGGGLLLAAASLSFSRHGCSRVLNSPRPFSRFRRIALKTGASYVPRSVRNPRRGARSPAVGLESLSQIVCIAPDKSISTMAKTPSKKAPSKXXXXAASGDKKRSKKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIAGEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSS 308
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BLAST of jgi.p|Trimin1|172765 vs. uniprot
Match: A0A836CJ22_9STRA (Histone H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ22_9STRA)

HSP 1 Score: 219 bits (557), Expect = 2.740e-69
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1 
Query:  487 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSSA 840
            MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSSA
Sbjct:    1 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSSA 118
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BLAST of jgi.p|Trimin1|172765 vs. uniprot
Match: A0A643C586_BALPH (Uncharacterized protein (Fragment) n=1 Tax=Balaenoptera physalus TaxID=9770 RepID=A0A643C586_BALPH)

HSP 1 Score: 224 bits (572), Expect = 1.370e-67
Identity = 153/295 (51.86%), Postives = 170/295 (57.63%), Query Frame = -1 
Query:    1 GGGELGDRLGALGDGMLGELSREHEAYRSLDLAGRQGGLFVVARQLARLGGDALEDVVDERVHDGHAALADARVGVHLLEHLVDVGAVGLGALGLLLLAVGGLLGXXXXLLAGDLGHP*DADMDC-----GTTTILNQCDTLATTPTEGARFACCCLTEKRQLILRKPACVHCSTKRNAMH*TSPTRKPA------AGLQFPVARLGRFLKVGRYAEHVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQ-----DEELNKLLGNVTIASGGVLPNIHAVLLPKK 837
            G G LGDRLGALG G+LG+L+ + +A+  LDL GR G   VV RQ  R   DALEDVVDERVHD H    DA + VHLL+H V V  + L A  L L AV  LLG     L    G        C     G   +     T    P  G R        KR  I R+   V              TR  A      AGLQFPV R+ R L+ G YAE VGAGAPVY+AAVLEYL AEILELAGNAARDNKK+RI+PRH+Q     DEELNKLLG VTIA GGVLPNI AVLLPKK
Sbjct:   16 GAGVLGDRLGALGHGVLGQLAGQQQAHGRLDLPGRDGRALVVMRQARRFARDALEDVVDERVHDAHGLGRDAGIRVHLLQHFVHVNGIALLAAALALPAVL-LLGFGDSFLRALFGR---RGGFCRFRHNGKHELQRPPRTQTQQPHRGYR--------KRLAIKREQFAVPVGVMSGRGKQGGKTRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 298
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BLAST of jgi.p|Trimin1|172765 vs. uniprot
Match: A0A1S3GF65_DIPOR (uncharacterized protein LOC105996929 n=1 Tax=Dipodomys ordii TaxID=10020 RepID=A0A1S3GF65_DIPOR)

HSP 1 Score: 226 bits (576), Expect = 8.220e-67
Identity = 148/295 (50.17%), Postives = 186/295 (63.05%), Query Frame = 1 
Query:   13 KHGVDVGQDTSGRDGHVAQQLVELLV-----LDVAGHDARLLVVARGVACELQNLRAQVLEHGRQVDGGARSHVLGVAAHLEEAAQTRHGELQSRCGFSRGGGLMHGVPLSAAMHASRLSEYQLPFFSQ--AAARKSCALRRCGGER--VALVQNGSSAAIHISILRMAKIPSK-KAAKAPKKAA----------DGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 837
            +HG+DVGQD +  +G  AQQ VELLV     L V+  DARLLVVA  VA +L++L  QVL+HGRQV  GA +  LG+ A  E+   +  GEL++  G +   GL      ++    S  SE      SQ  A  RK   + R G E+  + L++ G    +  S      +P   K+A APKK +          DGKK+K  R ESY  Y+YKVLKQVHPDTGIS + M IMNSF+ND+FERIA EA +L  YNK+ST++SREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:  136 QHGLDVGQDAALGNGDFAQQFVELLVVADGQLQVSRDDARLLVVAGRVASQLEDLGRQVLQHGRQVHRGAGADALGIVALAEQPVNSADGELETGSGRA---GLGLSASFASLFATSGHSEVSTVVSSQYGAGERKRTFIVRAGCEKAPLRLIKRGLGERLFRSSQPSLAMPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 427
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BLAST of jgi.p|Trimin1|172765 vs. uniprot
Match: UPI001486481B (uncharacterized protein LOC117713367 n=4 Tax=Euarchontoglires TaxID=314146 RepID=UPI001486481B)

HSP 1 Score: 214 bits (546), Expect = 6.080e-62
Identity = 147/290 (50.69%), Postives = 167/290 (57.59%), Query Frame = -1 
Query:    1 GGGELGDRLGALGDGMLGELSREHEAYRSLDLAGRQGGLFVVARQLARLGGDALEDVVDERVHDGHAALADARVGVHLLEHLVDVGAVGLGALGLLLLAV------GGLLGXXXXLLAGDLGHP*DADMDCGTTTILNQCDTLATTPTEGARFACCCLTEKRQLILRKPACVHCSTKRNAMH*TSPTRKPAAGLQFPVARLGRFLKVGRYAEHVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQ-----DEELNKLLGNVTIASGGVLPNIHAVLLPKK 837
            G G LGD LGALG G+LG+L  + +A+  LDL GR G   VV RQ   L  D LEDVV ERVHD H    DA V VHLL+HLV V  V L A  L LLAV       GLLG    LL G  G      +        ++  T++    +G +                                + TR   AGLQFPV R+ R L+ G Y+E VGAGAPVYLAAVLEYL AEILELAGNAARDNKK+RI+PRH+Q     DEELNKLLG VTIA GGVLPNI AVLLPKK
Sbjct:  102 GAGVLGDGLGALGHGVLGQLPGQQQAHGRLDLPGRDGRALVVMRQARCLARDPLEDVVHERVHDAHGLGRDAGVRVHLLQHLVHVHRVALLAAALALLAVLLLRLGHGLLGA---LLRGGSGFGWLRHIS------YSKIFTMSGRGKQGGKARA----------------------------KAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 354
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BLAST of jgi.p|Trimin1|172765 vs. uniprot
Match: D7FWI8_ECTSI (Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7FWI8_ECTSI)

HSP 1 Score: 193 bits (491), Expect = 2.560e-59
Identity = 104/117 (88.89%), Postives = 110/117 (94.02%), Query Frame = 1 
Query:  487 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 837
            MAK PSKK+AKAPKKA D KK+  KRTESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKAGD-KKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
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BLAST of jgi.p|Trimin1|172765 vs. uniprot
Match: A0A485K2U0_9STRA (Histone H2B n=29 Tax=Stramenopiles TaxID=33634 RepID=A0A485K2U0_9STRA)

HSP 1 Score: 192 bits (489), Expect = 5.660e-59
Identity = 104/119 (87.39%), Postives = 111/119 (93.28%), Query Frame = 1 
Query:  487 MAKIPSKKAAKAPKKAAD-GKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSSA 840
            MAK PSKK+AKAPKK  + GK +K KR ESY +YIYKVLKQVHP+TGISKRGMSIMNSFIND+FERIASEAGKL+RYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSSA
Sbjct:    1 MAKTPSKKSAKAPKKTGEKGKNRKVKRIESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSSA 119
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BLAST of jgi.p|Trimin1|172765 vs. uniprot
Match: A0A8J5ZWJ2_GALPY (Histone H3.1 n=1 Tax=Galemys pyrenaicus TaxID=202257 RepID=A0A8J5ZWJ2_GALPY)

HSP 1 Score: 206 bits (525), Expect = 1.520e-58
Identity = 139/284 (48.94%), Postives = 151/284 (53.17%), Query Frame = -1 
Query:    1 GGGELGDRLGALGDGMLGELSREHEAYRSLDLAGRQGGLFVVARQLARLGGDALEDVVDERVHDGHAALADARVGVHLLEHLVDVGAVGLGALGLLLLAVGGLLGXXXXLLAGDLGHP*DADMDCGTTTILNQCDTLATTPTEGARFACCCLTEKRQLILRKPACVHCSTKRNAMH*TSPTRKPAAGLQFPVARLGRFLKVGRYAEHVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQ-----DEELNKLLGNVTIASGGVLPNIHAVLLPKK 837
            G G LGD  G      LG+L+ + +A+  LDL  R G   VV RQ  RL  DALEDVVDERVHD H    DARVGVHLL+HLV V  V L A  L LLA G                                                                     K  A    + TR   AGLQFPV R+ R L+ G YAE VGAGAPVYLAAVLEYL AEILELAGNAARDNKK+RI+PRH+Q     DEELNKLLG VTIA GGVLPNI AVLLPKK
Sbjct:   23 GAGVLGDXXGXXXXXXLGQLAGQQQAHGRLDLPRRDGRALVVVRQARRLARDALEDVVDERVHDAHGLGRDARVGVHLLQHLVHVHRVALLAAALALLAGG---------------------------------------------------------------------KARAK---AKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 234
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BLAST of jgi.p|Trimin1|172765 vs. uniprot
Match: UPI000643CB06 (LOW QUALITY PROTEIN: uncharacterized protein LOC101637187 n=1 Tax=Condylura cristata TaxID=143302 RepID=UPI000643CB06)

HSP 1 Score: 207 bits (527), Expect = 2.810e-58
Identity = 136/284 (47.89%), Postives = 149/284 (52.46%), Query Frame = -1 
Query:    1 GGGELGDRLGALGDGMLGELSREHEAYRSLDLAGRQGGLFVVARQLARLGGDALEDVVDERVHDGHAALADARVGVHLLEHLVDVGAVGLGALGLLLLAVGGLLGXXXXLLAGDLGHP*DADMDCGTTTILNQCDTLATTPTEGARFACCCLTEKRQLILRKPACVHCSTKRNAMH*TSPTRKPAAGLQFPVARLGRFLKVGRYAEHVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQ-----DEELNKLLGNVTIASGGVLPNIHAVLLPKK 837
            G G LGD LGALG G+LG+L+ + +A+  LDL  R G   VV RQ  RL  DALEDVVDERVHD H    DARVGVHLL+HLV  G                                                                                    K  A    + TR   AGLQFPV R+ R L+ G YAE VGAGAPVYLAAVLEYL AEILELAGNAARDNKK+RI+PRH+Q     DEELNKLLG VTIA GGVLPNI AVLLPKK
Sbjct:  111 GAGVLGDGLGALGHGVLGQLAGQQQAHGRLDLPRRDGRALVVVRQARRLARDALEDVVDERVHDAHGLGRDARVGVHLLQHLVHGG------------------------------------------------------------------------------------KARAK---AKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 307
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|172765 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CJT3_9STRA7.180e-10869.50Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R... [more]
K0SNH7_THAOC1.510e-7856.19Histone H2B n=3 Tax=Thalassiosira oceanica TaxID=1... [more]
A0A836CJ22_9STRA2.740e-69100.00Histone H2B n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A643C586_BALPH1.370e-6751.86Uncharacterized protein (Fragment) n=1 Tax=Balaeno... [more]
A0A1S3GF65_DIPOR8.220e-6750.17uncharacterized protein LOC105996929 n=1 Tax=Dipod... [more]
UPI001486481B6.080e-6250.69uncharacterized protein LOC117713367 n=4 Tax=Euarc... [more]
D7FWI8_ECTSI2.560e-5988.89Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A485K2U0_9STRA5.660e-5987.39Histone H2B n=29 Tax=Stramenopiles TaxID=33634 Rep... [more]
A0A8J5ZWJ2_GALPY1.520e-5848.94Histone H3.1 n=1 Tax=Galemys pyrenaicus TaxID=2022... [more]
UPI000643CB062.810e-5847.89LOW QUALITY PROTEIN: uncharacterized protein LOC10... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_96contigContig_96:134358..137116 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|172765|e_gw1.96.69.1
BRITEko00000,ko00001,ko03036,ko04147
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
KEGG koko:K11252
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006325,GO:0006333,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
DescriptionHistone H2B
COG categoryB
Max annot lvl2759|Eukaryota
EggNOG OGsKOG1744@1|root,KOG1744@2759|Eukaryota,2XCBM@2836|Bacillariophyta
Evalue2.48e-79
Seed ortholog159749.K0SNH7
Hectar predicted targeting categoryother localisation
TranscriptId173087
TrackFilteredModels1
ProteinId172765
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172765gene_13046Tribonema minus UTEX_B_3156 geneContig_96 134358..137116 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172765Trimin1|172765|e_gw1.96.69.1Tribonema minus UTEX_B_3156 polypeptideContig_96 134358..137116 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13046_4exon_13046_4Tribonema minus UTEX_B_3156 exonContig_96 134358..134714 -
exon_13046_3exon_13046_3Tribonema minus UTEX_B_3156 exonContig_96 134873..135054 -
exon_13046_2exon_13046_2Tribonema minus UTEX_B_3156 exonContig_96 135928..136141 -
exon_13046_1exon_13046_1Tribonema minus UTEX_B_3156 exonContig_96 137027..137116 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13046CDS_13046Tribonema minus UTEX_B_3156 CDSContig_96 137027..137116 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13046 ID=mRNA_13046|Name=jgi.p|Trimin1|172765|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=843bp|location=Sequence derived from alignment at Contig_96:134358..137116- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTTCTTGGGCAGAAGCACGGCGTGGATGTTGGGCAGGACACCTCCGGACG
CGATGGTCACGTTGCCCAGCAGCTTGTTGAGCTCCTCGTCCTGGATGTGG
CGGGGCACGATGCGCGACTTCTTGTTGTCGCGCGCGGCGTTGCCTGCGAG
CTCCAGAATCTCCGCGCACAGGTACTCGAGCACGGCCGCCAGGTAGACGG
GGGCGCCCGCTCCCACGTGCTCGGCGTAGCGGCCCACCTTGAGGAAGCGG
CCCAGACGCGCCACGGGGAACTGCAGTCCCGCTGCGGGTTTTCGCGTGGG
GGAGGTCTAATGCATGGCGTTCCGCTTAGTGCTGCAATGCACGCAAGCAG
GCTTTCTGAGTATCAACTGCCTTTTTTCAGTCAGGCAGCAGCACGCAAAT
CGTGCGCCCTCCGTAGGTGTGGTGGCGAGCGTGTCGCATTGGTTCAAAAT
GGTAGTAGTGCCGCAATCCATATCAGCATCCTAAGGATGGCCAAGATCCC
CAGCAAGAAGGCCGCCAAGGCCCCCAAGAAGGCCGCCGACGGCAAGAAGA
AGAAGGCCAAGCGCACCGAGTCCTACGGCTCCTACATCTACAAGGTGCTC
AAGCAGGTGCACCCCGACACGGGCATCAGCAAGCGCGGCATGTCCATCAT
GAACTCTTTCATCAACGACGTCTTCGAGCGCATCGCCTCCGAGGCGGGCA
AGCTGACGCGCTACAACAAAAAGTCCACCCTGTCTTCCCGCGAGATCCAG
ACTGCGGTACGCCTCATGCTCCCGGGAGAGCTCGCCAAGCATGCCGTCTC
CGAGGGCACCAAGGCGGTCACCAAGTTCACCTCCTCCGCCTAG
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protein sequence of jgi.p|Trimin1|172765

>Trimin1|172765|e_gw1.96.69.1 ID=Trimin1|172765|e_gw1.96.69.1|Name=jgi.p|Trimin1|172765|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=281bp
LLGQKHGVDVGQDTSGRDGHVAQQLVELLVLDVAGHDARLLVVARGVACE
LQNLRAQVLEHGRQVDGGARSHVLGVAAHLEEAAQTRHGELQSRCGFSRG
GGLMHGVPLSAAMHASRLSEYQLPFFSQAAARKSCALRRCGGERVALVQN
GSSAAIHISILRMAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVL
KQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQ
TAVRLMLPGELAKHAVSEGTKAVTKFTSSA*
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mRNA from alignment at Contig_96:134358..137116-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13046 ID=mRNA_13046|Name=jgi.p|Trimin1|172765|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2759bp|location=Sequence derived from alignment at Contig_96:134358..137116- (Tribonema minus UTEX_B_3156 )
CTTCTTGGGCAGAAGCACGGCGTGGATGTTGGGCAGGACACCTCCGGACG
CGATGGTCACGTTGCCCAGCAGCTTGTTGAGCTCCTCGTCGTTGCGCACC
TGCGACGCGCGCGAATGCAGTGTTTTTGTATTGTTATTACTATCACCACG
GATGCAGTAAAAAGTGTTCATAGATTGTCTCGCGCAGCACACGTTGCACA
TGACCAGCAGCTTGGTGAGCTCCTCATCATTGCGCACCTGGAACAGGCGC
GAACGCAGCAGCGTAAATGTGTTGTTATGGAAACGAATCAAAATATCGTA
GAGGTCTAGGTGACAAGGAGTGGTTCGCCACATCACCACGGATGCCATAC
CGCGTGCATACATATGACCAGCAGCTTGTTGAGCTCCTCGTCGTTGCGCA
CCTGCGACAGGCGTGAATGCAGCGTCATTGTTGTGCCACGGCAACATTGC
TCAAGCCAGCTCATCAAGACAATGCAGAAAAAAGTGATGATGCTACAGTA
ACCAACGCAACCACAGAATCGCACCCCAAACACAGGCCAATCACCGCGAG
CCCTAGGGTGCACGACAGGTAGAGCAGGAGTGTCTGCCTCCAGACGAAGC
TGAGTTTTCAGAGCACAAAGCAGTGGCCTAGTCTATGCAGCAGCAGAAAA
AAACAGAACTTACCACGAGCGGAAACCCCTCCAGACAAAACTGAAACATT
CAAGGGACAAAGCAGTGGCCTATGCAGCAGCAGGAAAAGAGAGAACTCAC
CGCGAGTTGGATGTGGCGCGGCACGATGCGCGACTTCTTGTTGGCGCGCG
CAGCGGTGCCGGCAAGGGGTGTTCGCCTCCGAGCGCAAGTGCATTCAAAG
CGCAAAGCAGTACTTCATGGATTCGCAGCTCTCATTTTGCAGCTCGGGTA
CTTTTTTTTTACCCCCCCGGACTTGAAGCATTTCGAAGAGAGCATTCTGA
AGCAGTTAGCGCCACTCACCGCGAGCTGGATGTGGCGGGGCACGATGCGC
GACTTCTTGTTGTCGCGCGCGGCGTTGCCTGCGAGCTCCAGAATCTCCGC
GCACAGGTACTCGAGCACGGCCGCCAGGTAGACGGGGGCGCCCGCTCCCA
CGTGCTCGGCGTAGCGGCCCACCTTGAGGAAGCGGCCCAGACGCGCCACG
GGGAACTGCAGTCCCGCTGCGGGTTTTCGCGTGGGGGAGGTGCAGGGAGG
ATATTGAGATATGCGAGTTAAGTGCAGGGGTTTGGTGGGTCCTGCCGAGT
GTTGTCGGTTGAATGCATAGCCTCTCTGAATGCTGGCCTGTATGGACTGA
CGTGATCTACTCCGATCAAGCTCGGCAGTCAACTATTTGACAACTGTCTT
GAGAAGCCACTGAAGCCACTTTTTAGCGATTCGACAGGACAAGACGATCA
GCGGCACGACACAGCTGCGTTGACTCTATCAGATAGCGATGTTTGCGTCT
AGCTGGAGCGTGACCCCACCACCGCAGATGGGCACAGCAACGTCCATCAA
CTGCCAAATTTCAGACAGCGCTTACCGTCGAGAATTTGCGGGGGGCTAAC
GCAAGCTACAAGCTCTGTCAACTGCCAAAATGGGTACGACAAAGCCACGG
AGGATGTGCAGGAGTAGCAACGGTGACTTTGGCTTGATCTGCACGCTGAT
GCAGAGCAATCTGTCCAGACTACGCCGCCGACATTGCCTCGACACCAAAC
TGCCAAAGCAAGCGCGGACAACGTGATCGCCCACCATGTCCTCACCCTTC
GAGGACTTGGACGTGCTCTTCTTGGCCTCCGCGCCGCGGCCGCCCTTTCC
TTTGCCAGCCATGCTTGTTGAGAGAGAGAGGTGGTGATACCTAGAGAGGT
GCGTGTCTCTGTGGAAACTAAACGGGCTGGCGAGCCTGCCTCACATCTTT
TTCCCCATTTTGGGCGGGACGCAATCTCATTGGTCATAATTTCGAAACCC
AGAATACCAATTCGGTGATGAGCAACTTATTTGTCTCACGCTCTCTCCTA
CCACACACCAAGCTCCAAACTCAAAGGTGAGGCCAGCGGCGAGCTTAACG
CAACATAGAGAGGTCTAATGCATGGCGTTCCGCTTAGTGCTGCAATGCAC
GCAAGCAGGCTTTCTGAGTATCAACTGCCTTTTTTCAGTCAGGCAGCAGC
ACGCAAATCGTGCGCCCTCCGTAGGTGTGGTGGCGAGCGTGTCGCATTGG
TTCAAAATGGTAGTAGTGCCGCAATCCATATCAGCATCCTAAGGGTACTG
CTTCGTGCATCGTTTGACTGAGAAAAAGCGAATTCACTGATCGAGGTCTC
GCATCACTTTTACACGACGCTGGCGCGCTTTTTCGCACGTTATCATCAGC
CCGTCTGACCTGCTACTTGCTCCTTCTCGTACGCTGCTCGACTCCTCCTC
AGATGGCCAAGATCCCCAGCAAGAAGGCCGCCAAGGCCCCCAAGAAGGCC
GCCGACGGCAAGAAGAAGAAGGCCAAGCGCACCGAGTCCTACGGCTCCTA
CATCTACAAGGTGCTCAAGCAGGTGCACCCCGACACGGGCATCAGCAAGC
GCGGCATGTCCATCATGAACTCTTTCATCAACGACGTCTTCGAGCGCATC
GCCTCCGAGGCGGGCAAGCTGACGCGCTACAACAAAAAGTCCACCCTGTC
TTCCCGCGAGATCCAGACTGCGGTACGCCTCATGCTCCCGGGAGAGCTCG
CCAAGCATGCCGTCTCCGAGGGCACCAAGGCGGTCACCAAGTTCACCTCC
TCCGCCTAG
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Coding sequence (CDS) from alignment at Contig_96:134358..137116-

>mRNA_13046 ID=mRNA_13046|Name=jgi.p|Trimin1|172765|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=843bp|location=Sequence derived from alignment at Contig_96:134358..137116- (Tribonema minus UTEX_B_3156 )
CTTCTTGGGCAGAAGCACGGCGTGGATGTTGGGCAGGACACCTCCGGACG
CGATGGTCACGTTGCCCAGCAGCTTGTTGAGCTCCTCGTCCTGGATGTGG
CGGGGCACGATGCGCGACTTCTTGTTGTCGCGCGCGGCGTTGCCTGCGAG
CTCCAGAATCTCCGCGCACAGGTACTCGAGCACGGCCGCCAGGTAGACGG
GGGCGCCCGCTCCCACGTGCTCGGCGTAGCGGCCCACCTTGAGGAAGCGG
CCCAGACGCGCCACGGGGAACTGCAGTCCCGCTGCGGGTTTTCGCGTGGG
GGAGGTCTAATGCATGGCGTTCCGCTTAGTGCTGCAATGCACGCAAGCAG
GCTTTCTGAGTATCAACTGCCTTTTTTCAGTCAGGCAGCAGCACGCAAAT
CGTGCGCCCTCCGTAGGTGTGGTGGCGAGCGTGTCGCATTGGTTCAAAAT
GGTAGTAGTGCCGCAATCCATATCAGCATCCTAAGGATGGCCAAGATCCC
CAGCAAGAAGGCCGCCAAGGCCCCCAAGAAGGCCGCCGACGGCAAGAAGA
AGAAGGCCAAGCGCACCGAGTCCTACGGCTCCTACATCTACAAGGTGCTC
AAGCAGGTGCACCCCGACACGGGCATCAGCAAGCGCGGCATGTCCATCAT
GAACTCTTTCATCAACGACGTCTTCGAGCGCATCGCCTCCGAGGCGGGCA
AGCTGACGCGCTACAACAAAAAGTCCACCCTGTCTTCCCGCGAGATCCAG
ACTGCGGTACGCCTCATGCTCCCGGGAGAGCTCGCCAAGCATGCCGTCTC
CGAGGGCACCAAGGCGGTCACCAAGTTCACCTCCTCCGCCTAG
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