mRNA_12995 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|152856
Unique NamemRNA_12995
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|152856 vs. uniprot
Match: A0A836CQK7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQK7_9STRA)

HSP 1 Score: 153 bits (386), Expect = 5.740e-47
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1 
Query:    1 IALKEAILDALKAMFGVVGSAAYEVDVLSYDTSDGAAILRIASDALVPVRAALTLKGSHGNAPIRFAVLHASPFLAALACPRF 249
            IALKEAILDALKAMFGVVGSAAYEVDVLSYDTSDGAAILRIASDALVPVRAALTLKGSHGNAPIRFAVLHASPFLAALACPRF
Sbjct:    1 IALKEAILDALKAMFGVVGSAAYEVDVLSYDTSDGAAILRIASDALVPVRAALTLKGSHGNAPIRFAVLHASPFLAALACPRF 83
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BLAST of jgi.p|Trimin1|152856 vs. uniprot
Match: A0A024TG61_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TG61_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 5.540e-5
Identity = 30/83 (36.14%), Postives = 46/83 (55.42%), Query Frame = 1 
Query:    7 LKEAILDALKAMFGVVGSAAYEVDVLSY--DTSDGAAILRIASDALVPVRAALTLKGSHGNAPIRFAVLHASPFLAALACPRF 249
            +K  I  ++K +FG VG AA+  DVLS   DT+  AA+LR+  +++ P+  AL L     N P ++     +  L  LA PR+
Sbjct:   50 VKLQIASSIKQLFGTVGVAAHNFDVLSVVADTTTHAALLRVRQESVTPLWTALALSTKFDNFPCKYEATQVASSLVELASPRY 132
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152856 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CQK7_9STRA5.740e-47100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A024TG61_9STRA5.540e-536.14Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_109contigContig_109:312073..312321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|152856|gw1.109.79.1
BRITEko00000,ko00001,ko01000,ko03016
KEGG Pathwayko03013,map03013
KEGG koko:K14529
EC3.1.26.5
GOsGO:0000966,GO:0001682,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0030677,GO:0030681,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:0099116,GO:1901360,GO:1901363,GO:1902494,GO:1902555,GO:1905348,GO:1990904
Preferred nameRPP14
Descriptionribonuclease P
COG categoryS
Max annot lvl33208|Metazoa
EggNOG OGs2BCSB@1|root,2S10S@2759|Eukaryota,3A3XP@33154|Opisthokonta,3BRFU@33208|Metazoa,3D7R7@33213|Bilateria,48EKZ@7711|Chordata,49BQG@7742|Vertebrata,4CI9Z@8459|Testudines
Evalue7.16e-10
Seed ortholog8469.XP_007066030.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibonuclease P/MRP protein subunit
Ec32 orthologEc-08_006170.1
TranscriptId153178
TrackFilteredModels1
ProteinId152856
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152856gene_12995Tribonema minus UTEX_B_3156 geneContig_109 312073..312321 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12995_1exon_12995_1Tribonema minus UTEX_B_3156 exonContig_109 312073..312321 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12995CDS_12995Tribonema minus UTEX_B_3156 CDSContig_109 312073..312321 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152856Trimin1|152856|gw1.109.79.1Tribonema minus UTEX_B_3156 polypeptideContig_109 312073..312321 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12995 ID=mRNA_12995|Name=jgi.p|Trimin1|152856|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=249bp|location=Sequence derived from alignment at Contig_109:312073..312321- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATAGCTCTCAAAGAGGCCATCTTGGACGCCCTCAAAGCCATGTTTGGCGT
CGTCGGCAGCGCGGCATACGAAGTCGACGTGCTCTCATATGACACCAGCG
ACGGTGCGGCGATACTGCGCATTGCCAGTGACGCGCTGGTTCCGGTGCGC
GCGGCTCTCACGCTCAAGGGCAGTCACGGCAACGCCCCAATCCGATTCGC
CGTGCTGCACGCGTCGCCCTTCCTGGCGGCGCTTGCGTGTCCGCGCTTC
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protein sequence of jgi.p|Trimin1|152856

>Trimin1|152856|gw1.109.79.1 ID=Trimin1|152856|gw1.109.79.1|Name=jgi.p|Trimin1|152856|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=83bp
IALKEAILDALKAMFGVVGSAAYEVDVLSYDTSDGAAILRIASDALVPVR
AALTLKGSHGNAPIRFAVLHASPFLAALACPRF
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mRNA from alignment at Contig_109:312073..312321-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12995 ID=mRNA_12995|Name=jgi.p|Trimin1|152856|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=249bp|location=Sequence derived from alignment at Contig_109:312073..312321- (Tribonema minus UTEX_B_3156 )
ATAGCTCTCAAAGAGGCCATCTTGGACGCCCTCAAAGCCATGTTTGGCGT
CGTCGGCAGCGCGGCATACGAAGTCGACGTGCTCTCATATGACACCAGCG
ACGGTGCGGCGATACTGCGCATTGCCAGTGACGCGCTGGTTCCGGTGCGC
GCGGCTCTCACGCTCAAGGGCAGTCACGGCAACGCCCCAATCCGATTCGC
CGTGCTGCACGCGTCGCCCTTCCTGGCGGCGCTTGCGTGTCCGCGCTTC
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Coding sequence (CDS) from alignment at Contig_109:312073..312321-

>mRNA_12995 ID=mRNA_12995|Name=jgi.p|Trimin1|152856|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=249bp|location=Sequence derived from alignment at Contig_109:312073..312321- (Tribonema minus UTEX_B_3156 )
ATAGCTCTCAAAGAGGCCATCTTGGACGCCCTCAAAGCCATGTTTGGCGT
CGTCGGCAGCGCGGCATACGAAGTCGACGTGCTCTCATATGACACCAGCG
ACGGTGCGGCGATACTGCGCATTGCCAGTGACGCGCTGGTTCCGGTGCGC
GCGGCTCTCACGCTCAAGGGCAGTCACGGCAACGCCCCAATCCGATTCGC
CGTGCTGCACGCGTCGCCCTTCCTGGCGGCGCTTGCGTGTCCGCGCTTC
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