mRNA_12977 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|174047
Unique NamemRNA_12977
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|174047 vs. uniprot
Match: A0A836CNR5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNR5_9STRA)

HSP 1 Score: 347 bits (891), Expect = 1.050e-114
Identity = 341/341 (100.00%), Postives = 341/341 (100.00%), Query Frame = 1 
Query:    1 MEAFADPLFVVPWAIPDDQDPAIGGDDSTVTGALPPRAVPSAYGSHTAGTPVPLTTVSTQAAXXXXXXXXXXXXXADNCDAGDACEILERTEEGTPPVQPPLRKQLRSRDICEHGRQHYFCKPCGGPGXXXXXXXXXXXXXXXXXSGSRSYXXXXXXXXXXXXXXGKKIXXXXXXXYHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPICRPALAMVCEHGRKHQCQACGGKPIKAGAAAKQSGGSPVVEAVEIANITLAVAEDVATVTAVGPSSSQRI 1023
            MEAFADPLFVVPWAIPDDQDPAIGGDDSTVTGALPPRAVPSAYGSHTAGTPVPLTTVSTQAAXXXXXXXXXXXXXADNCDAGDACEILERTEEGTPPVQPPLRKQLRSRDICEHGRQHYFCKPCGGPGXXXXXXXXXXXXXXXXXSGSRSYXXXXXXXXXXXXXXGKKIXXXXXXXYHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPICRPALAMVCEHGRKHQCQACGGKPIKAGAAAKQSGGSPVVEAVEIANITLAVAEDVATVTAVGPSSSQRI
Sbjct:    1 MEAFADPLFVVPWAIPDDQDPAIGGDDSTVTGALPPRAVPSAYGSHTAGTPVPLTTVSTQAAXXXXXXXXXXXXXADNCDAGDACEILERTEEGTPPVQPPLRKQLRSRDICEHGRQHYFCKPCGGPGXXXXXXXXXXXXXXXXXSGSRSYXXXXXXXXXXXXXXGKKIXXXXXXXYHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPICRPALAMVCEHGRKHQCQACGGKPIKAGAAAKQSGGSPVVEAVEIANITLAVAEDVATVTAVGPSSSQRI 341
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BLAST of jgi.p|Trimin1|174047 vs. uniprot
Match: A0A835ZCB8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCB8_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 7.110e-15
Identity = 190/329 (57.75%), Postives = 207/329 (62.92%), Query Frame = 1 
Query:    1 MEAFADPLFVVPWAIPDDQDPAIG-GDDS----TVTGALPPRAVPSAYGSHTAGTPVPLTTVSTQAAXXXXXXXXXXXXXADNCDAGDACEILERTEEGTPPVQ-------PPLRK--QLRSRDICEHGRQHYFCKPCGGPGXXXXXXXXXXXXXXXXXSGSRSYXXXXXXXXXXXXXXGKKIXXXXXXXYHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPICRPALAMVCEHGRKHQCQACGGKPIKAGAAAKQSGGSPVVEAVE 945
            ME    PL VVPWA  DD +PAIG G++S    T    +PP A                                     AD     D CEILER EEG PP+        P  RK  QL S+  CEHGR +Y+CKPCGGPG    X   XXXXXX     ++ +XXXXXXXXXXXXX  K+ XXXXXXX  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                 CRP LAMVCEHGRK +CQACGGKP+K   AA+QSGG+PV  A +
Sbjct:    1 MEVPTAPL-VVPWATSDDPEPAIGDGNNSSKSTTTISHVPPAAT------------------------------------ADGIAEADDCEILERMEEGPPPIXXXXXXXXPMQRKTPQLSSKRKCEHGRVYYYCKPCGGPGICAHXQHRXXXXXXGRLGLNKHHXXXXXXXXXXXXXGSKRFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGPCEHGNFRPSCTT--CRPLLAMVCEHGRKRKCQACGGKPVKKAGAARQSGGTPVASATD 290
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BLAST of jgi.p|Trimin1|174047 vs. uniprot
Match: A0A835ZCT0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCT0_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.820e-9
Identity = 47/121 (38.84%), Postives = 56/121 (46.28%), Query Frame = 1 
Query:   31 VPWAIPDDQDPAI--GGDDSTVTGA-LPPRAVPSAYGSHTAGTPVPLTTVSTQAAXXXXXXXXXXXXXADNCDAGDACEILERTEEGTPPVQPPLRKQLRSRDICEHGRQHYFCKPCGGPG 384
            VPWAI D  +PAI  GG++S  T A +PP   P+A                                 AD     D CEILER EE  P + P  RK       CEHG+++YFCKPCGGPG
Sbjct:   10 VPWAISDYLEPAISGGGNNSNSTIAHVPPAVSPAAA--------------------------------ADGIAEADECEILERMEEDLPQLPPSKRK-------CEHGQRYYFCKPCGGPG 91
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BLAST of jgi.p|Trimin1|174047 vs. uniprot
Match: A0A835ZNZ0_9STRA (Cysteine-rich protein with zinc finger protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZNZ0_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.330e-9
Identity = 37/68 (54.41%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:  820 PALAMVCEHGRKHQCQACGGKPIKAGAAAKQSGGSPVVEAVEIANITLAVAEDVATVTAVGPSSSQRI 1023
            PALAM+CEHGR+++CQACGGKPIK  A   QSG   V EA +I N  LA A D A++T  G S  + +
Sbjct:  265 PALAMLCEHGRRYKCQACGGKPIKNAAIEGQSGSGVVAEAADIDNRPLAAAGDAASLTTGGVSPRRTV 332
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174047 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A836CNR5_9STRA1.050e-114100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZCB8_9STRA7.110e-1557.75Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZCT0_9STRA1.820e-938.84Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZNZ0_9STRA3.330e-954.41Cysteine-rich protein with zinc finger protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_109contigContig_109:141662..142789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|174047|e_gw1.109.13.1
Hectar predicted targeting categoryother localisation
TranscriptId174369
TrackFilteredModels1
ProteinId174047
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174047gene_12977Tribonema minus UTEX_B_3156 geneContig_109 141662..142789 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12977_1exon_12977_1Tribonema minus UTEX_B_3156 exonContig_109 141662..142789 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12977CDS_12977Tribonema minus UTEX_B_3156 CDSContig_109 141662..142789 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174047Trimin1|174047|e_gw1.109.13.1Tribonema minus UTEX_B_3156 polypeptideContig_109 141662..142789 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12977 ID=mRNA_12977|Name=jgi.p|Trimin1|174047|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1128bp|location=Sequence derived from alignment at Contig_109:141662..142789+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGCCTTTGCTGATCCGCTGTTTGTGGTGCCGTGGGCGATCCCCGA
TGACCAAGACCCCGCCATCGGAGGCGATGACAGCACCGTCACAGGTGCAC
TGCCACCAAGGGCAGTGCCTTCCGCATACGGTAGCCACACCGCTGGCACC
CCAGTGCCTCTGACTACAGTCAGTACACAGGCCGCCACGACTGCTGCTGC
AGCTGGTGCTGCAGCTGGCACAGCTGCTGACAACTGTGATGCAGGGGACG
CTTGCGAGATTCTGGAGCGCACAGAGGAGGGCACGCCGCCAGTGCAGCCT
CCGCTTCGAAAACAGCTCCGATCGCGGGACATATGCGAGCACGGTCGACA
ACACTACTTCTGCAAGCCGTGTGGCGGCCCAGGCATCTGCGAACATGGGC
GGCGTCGGCCGGAGTGCCGCGCGTGCAGCGGCCCATCAGGGAGCAGGTCT
TATTGCGAGCACAGCCGGCGGCGGGATGAGTGCAAGGATTGCGGGGGTAA
GAAGATCTGCGAGCACGGGCGGCAGCGCTACCACTGCAAGGAGTGCGGCG
GCGCGGGGCTGTGCGAGCACGGGCGGCGCCGCTGCCGCTGCAAGGACTGC
GGCGGCAGCAGCAGGTGCGGCCACGGGCGCCTGAAGGTCTCGTGCAAGGA
GTGCGGCGGCAGCAGCATCTGCGCGCACAACCGGCAGAGGAGCTCCTGCA
AGGAGTGCGGCGGGGCGTCCATTTGCTTGCACGGCAAGCTTAGAAGCTTT
TGCAGGGATTGCGGAGGGCGTGGCATCTGCGAGCATCGGCGCGCCAGGCA
CTGGTGCCCGATCTGCAGACCGGCGCTTGCGATGGTGTGCGAGCACGGGC
GGAAGCACCAGTGCCAGGCATGCGGCGGGAAGCCCATCAAGGCCGGTGCT
GCTGCGAAGCAGAGCGGCGGCAGTCCAGTAGTGGAGGCGGTAGAGATCGC
TAACATAACACTGGCAGTAGCTGAAGATGTTGCGACTGTCACGGCTGTAG
GGCCTAGTAGCTCACAGCGGATAGTAGTTGATGCGACAGACCTGGCTAGC
AGACCGCTGTCAGTAGCTGGGGATGGTGCAACTGTCGCGGCAGAAGGGCC
CAGCTCACAGCGGATAGTCGAAGTGTAG
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protein sequence of jgi.p|Trimin1|174047

>Trimin1|174047|e_gw1.109.13.1 ID=Trimin1|174047|e_gw1.109.13.1|Name=jgi.p|Trimin1|174047|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=376bp
MEAFADPLFVVPWAIPDDQDPAIGGDDSTVTGALPPRAVPSAYGSHTAGT
PVPLTTVSTQAATTAAAAGAAAGTAADNCDAGDACEILERTEEGTPPVQP
PLRKQLRSRDICEHGRQHYFCKPCGGPGICEHGRRRPECRACSGPSGSRS
YCEHSRRRDECKDCGGKKICEHGRQRYHCKECGGAGLCEHGRRRCRCKDC
GGSSRCGHGRLKVSCKECGGSSICAHNRQRSSCKECGGASICLHGKLRSF
CRDCGGRGICEHRRARHWCPICRPALAMVCEHGRKHQCQACGGKPIKAGA
AAKQSGGSPVVEAVEIANITLAVAEDVATVTAVGPSSSQRIVVDATDLAS
RPLSVAGDGATVAAEGPSSQRIVEV*
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mRNA from alignment at Contig_109:141662..142789+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12977 ID=mRNA_12977|Name=jgi.p|Trimin1|174047|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1128bp|location=Sequence derived from alignment at Contig_109:141662..142789+ (Tribonema minus UTEX_B_3156 )
ATGGAAGCCTTTGCTGATCCGCTGTTTGTGGTGCCGTGGGCGATCCCCGA
TGACCAAGACCCCGCCATCGGAGGCGATGACAGCACCGTCACAGGTGCAC
TGCCACCAAGGGCAGTGCCTTCCGCATACGGTAGCCACACCGCTGGCACC
CCAGTGCCTCTGACTACAGTCAGTACACAGGCCGCCACGACTGCTGCTGC
AGCTGGTGCTGCAGCTGGCACAGCTGCTGACAACTGTGATGCAGGGGACG
CTTGCGAGATTCTGGAGCGCACAGAGGAGGGCACGCCGCCAGTGCAGCCT
CCGCTTCGAAAACAGCTCCGATCGCGGGACATATGCGAGCACGGTCGACA
ACACTACTTCTGCAAGCCGTGTGGCGGCCCAGGCATCTGCGAACATGGGC
GGCGTCGGCCGGAGTGCCGCGCGTGCAGCGGCCCATCAGGGAGCAGGTCT
TATTGCGAGCACAGCCGGCGGCGGGATGAGTGCAAGGATTGCGGGGGTAA
GAAGATCTGCGAGCACGGGCGGCAGCGCTACCACTGCAAGGAGTGCGGCG
GCGCGGGGCTGTGCGAGCACGGGCGGCGCCGCTGCCGCTGCAAGGACTGC
GGCGGCAGCAGCAGGTGCGGCCACGGGCGCCTGAAGGTCTCGTGCAAGGA
GTGCGGCGGCAGCAGCATCTGCGCGCACAACCGGCAGAGGAGCTCCTGCA
AGGAGTGCGGCGGGGCGTCCATTTGCTTGCACGGCAAGCTTAGAAGCTTT
TGCAGGGATTGCGGAGGGCGTGGCATCTGCGAGCATCGGCGCGCCAGGCA
CTGGTGCCCGATCTGCAGACCGGCGCTTGCGATGGTGTGCGAGCACGGGC
GGAAGCACCAGTGCCAGGCATGCGGCGGGAAGCCCATCAAGGCCGGTGCT
GCTGCGAAGCAGAGCGGCGGCAGTCCAGTAGTGGAGGCGGTAGAGATCGC
TAACATAACACTGGCAGTAGCTGAAGATGTTGCGACTGTCACGGCTGTAG
GGCCTAGTAGCTCACAGCGGATAGTAGTTGATGCGACAGACCTGGCTAGC
AGACCGCTGTCAGTAGCTGGGGATGGTGCAACTGTCGCGGCAGAAGGGCC
CAGCTCACAGCGGATAGTCGAAGTGTAG
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Coding sequence (CDS) from alignment at Contig_109:141662..142789+

>mRNA_12977 ID=mRNA_12977|Name=jgi.p|Trimin1|174047|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1128bp|location=Sequence derived from alignment at Contig_109:141662..142789+ (Tribonema minus UTEX_B_3156 )
ATGGAAGCCTTTGCTGATCCGCTGTTTGTGGTGCCGTGGGCGATCCCCGA
TGACCAAGACCCCGCCATCGGAGGCGATGACAGCACCGTCACAGGTGCAC
TGCCACCAAGGGCAGTGCCTTCCGCATACGGTAGCCACACCGCTGGCACC
CCAGTGCCTCTGACTACAGTCAGTACACAGGCCGCCACGACTGCTGCTGC
AGCTGGTGCTGCAGCTGGCACAGCTGCTGACAACTGTGATGCAGGGGACG
CTTGCGAGATTCTGGAGCGCACAGAGGAGGGCACGCCGCCAGTGCAGCCT
CCGCTTCGAAAACAGCTCCGATCGCGGGACATATGCGAGCACGGTCGACA
ACACTACTTCTGCAAGCCGTGTGGCGGCCCAGGCATCTGCGAACATGGGC
GGCGTCGGCCGGAGTGCCGCGCGTGCAGCGGCCCATCAGGGAGCAGGTCT
TATTGCGAGCACAGCCGGCGGCGGGATGAGTGCAAGGATTGCGGGGGTAA
GAAGATCTGCGAGCACGGGCGGCAGCGCTACCACTGCAAGGAGTGCGGCG
GCGCGGGGCTGTGCGAGCACGGGCGGCGCCGCTGCCGCTGCAAGGACTGC
GGCGGCAGCAGCAGGTGCGGCCACGGGCGCCTGAAGGTCTCGTGCAAGGA
GTGCGGCGGCAGCAGCATCTGCGCGCACAACCGGCAGAGGAGCTCCTGCA
AGGAGTGCGGCGGGGCGTCCATTTGCTTGCACGGCAAGCTTAGAAGCTTT
TGCAGGGATTGCGGAGGGCGTGGCATCTGCGAGCATCGGCGCGCCAGGCA
CTGGTGCCCGATCTGCAGACCGGCGCTTGCGATGGTGTGCGAGCACGGGC
GGAAGCACCAGTGCCAGGCATGCGGCGGGAAGCCCATCAAGGCCGGTGCT
GCTGCGAAGCAGAGCGGCGGCAGTCCAGTAGTGGAGGCGGTAGAGATCGC
TAACATAACACTGGCAGTAGCTGAAGATGTTGCGACTGTCACGGCTGTAG
GGCCTAGTAGCTCACAGCGGATAGTAGTTGATGCGACAGACCTGGCTAGC
AGACCGCTGTCAGTAGCTGGGGATGGTGCAACTGTCGCGGCAGAAGGGCC
CAGCTCACAGCGGATAGTCGAAGTGTAG
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