mRNA_12966 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|173992
Unique NamemRNA_12966
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|173992 vs. uniprot
Match: A0A835ZFA5_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFA5_9STRA)

HSP 1 Score: 194 bits (493), Expect = 6.210e-63
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 
Query:    1 IERDIVDSGVNVTWDQIADLKDAKQLLQEAVVLPLWMPDYFKGIRRPWKGVLMFGPPGTGKTMLAKAVAAECRTTFFNVSASTLGSKVCMYSTI 282
            IERDIVDSGVNVTWDQIADLKDAKQLLQEAVVLPLWMPDYFKGIRRPWKGVLMFGPPGTGKTMLAKAVAAECRTTFFNVSASTLGSKVCMYSTI
Sbjct:    1 IERDIVDSGVNVTWDQIADLKDAKQLLQEAVVLPLWMPDYFKGIRRPWKGVLMFGPPGTGKTMLAKAVAAECRTTFFNVSASTLGSKVCMYSTI 94
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BLAST of jgi.p|Trimin1|173992 vs. uniprot
Match: A0A6H5K2D2_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2D2_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 5.630e-51
Identity = 82/86 (95.35%), Postives = 85/86 (98.84%), Query Frame = 1 
Query:    4 ERDIVDSGVNVTWDQIADLKDAKQLLQEAVVLPLWMPDYFKGIRRPWKGVLMFGPPGTGKTMLAKAVAAECRTTFFNVSASTLGSK 261
            ERDIV+ GV+VTWDQIADLKDAKQLLQEAVVLPLWMPDYFKGIRRPWKGVLMFGPPGTGKTMLAKAVAAEC+TTFFNVSASTLGSK
Sbjct:    8 ERDIVERGVSVTWDQIADLKDAKQLLQEAVVLPLWMPDYFKGIRRPWKGVLMFGPPGTGKTMLAKAVAAECKTTFFNVSASTLGSK 93
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BLAST of jgi.p|Trimin1|173992 vs. uniprot
Match: F0Y1I1_AURAN (AAA domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y1I1_AURAN)

HSP 1 Score: 165 bits (418), Expect = 1.300e-48
Identity = 77/87 (88.51%), Postives = 86/87 (98.85%), Query Frame = 1 
Query:    1 IERDIVDSGVNVTWDQIADLKDAKQLLQEAVVLPLWMPDYFKGIRRPWKGVLMFGPPGTGKTMLAKAVAAECRTTFFNVSASTLGSK 261
            IERDIV++GV+VTWD+IA+LK+AKQLLQEAVVLPLWMPD+F+GIRRPWKGVLMFGPPGTGKTMLAKAVAAEC+TTFFNVSASTL SK
Sbjct:    8 IERDIVETGVSVTWDEIAELKEAKQLLQEAVVLPLWMPDFFRGIRRPWKGVLMFGPPGTGKTMLAKAVAAECKTTFFNVSASTLSSK 94
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BLAST of jgi.p|Trimin1|173992 vs. uniprot
Match: D8LRZ3_ECTSI (Katanin p60 ATPase-containing subunit A1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRZ3_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 1.820e-48
Identity = 82/87 (94.25%), Postives = 86/87 (98.85%), Query Frame = 1 
Query:    1 IERDIVDSGVNVTWDQIADLKDAKQLLQEAVVLPLWMPDYFKGIRRPWKGVLMFGPPGTGKTMLAKAVAAECRTTFFNVSASTLGSK 261
            +ERDIV+ GV+VTWDQIADLKDAKQLLQEAVVLPLWMPDYFKGIRRPWKGVLMFGPPGTGKTMLAKAVAAEC+TTFFNVSASTLGSK
Sbjct:  439 LERDIVERGVSVTWDQIADLKDAKQLLQEAVVLPLWMPDYFKGIRRPWKGVLMFGPPGTGKTMLAKAVAAECKTTFFNVSASTLGSK 525
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BLAST of jgi.p|Trimin1|173992 vs. uniprot
Match: W7U5R9_9STRA (Katanin p60 ATPase-containing subunit A1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U5R9_9STRA)

HSP 1 Score: 164 bits (415), Expect = 1.300e-45
Identity = 77/87 (88.51%), Postives = 83/87 (95.40%), Query Frame = 1 
Query:    1 IERDIVDSGVNVTWDQIADLKDAKQLLQEAVVLPLWMPDYFKGIRRPWKGVLMFGPPGTGKTMLAKAVAAECRTTFFNVSASTLGSK 261
            IER+IV+ GVNV+WD IADL++AKQLLQEAVVLPLWMPDYFKGIRRPWKGVL+FGPPGTGKTMLAKAVA EC TTFFNVSASTLGSK
Sbjct:  341 IEREIVEQGVNVSWDSIADLQEAKQLLQEAVVLPLWMPDYFKGIRRPWKGVLLFGPPGTGKTMLAKAVATECATTFFNVSASTLGSK 427
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BLAST of jgi.p|Trimin1|173992 vs. uniprot
Match: A0A4D9D8G0_9STRA (Katanin p60 ATPase-containing subunit A1 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8G0_9STRA)

HSP 1 Score: 164 bits (415), Expect = 4.050e-45
Identity = 77/87 (88.51%), Postives = 83/87 (95.40%), Query Frame = 1 
Query:    1 IERDIVDSGVNVTWDQIADLKDAKQLLQEAVVLPLWMPDYFKGIRRPWKGVLMFGPPGTGKTMLAKAVAAECRTTFFNVSASTLGSK 261
            IER+IV+ GVNV+WD IADL++AKQLLQEAVVLPLWMPDYFKGIRRPWKGVL+FGPPGTGKTMLAKAVA EC TTFFNVSASTLGSK
Sbjct:  341 IEREIVEQGVNVSWDSIADLQEAKQLLQEAVVLPLWMPDYFKGIRRPWKGVLLFGPPGTGKTMLAKAVATECATTFFNVSASTLGSK 427
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BLAST of jgi.p|Trimin1|173992 vs. uniprot
Match: A0A7S3YD60_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YD60_HETAK)

HSP 1 Score: 156 bits (394), Expect = 4.080e-45
Identity = 74/85 (87.06%), Postives = 79/85 (92.94%), Query Frame = 1 
Query:    7 RDIVDSGVNVTWDQIADLKDAKQLLQEAVVLPLWMPDYFKGIRRPWKGVLMFGPPGTGKTMLAKAVAAECRTTFFNVSASTLGSK 261
            RDIV+ GV  TWD IA LK+AKQLLQEAVVLPLWMP+YF+GIRRPWKGVLMFGPPGTGKT+LAKAVAAECRTTFFNVSASTL SK
Sbjct:    1 RDIVEQGVVTTWDSIAGLKEAKQLLQEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVAAECRTTFFNVSASTLSSK 85
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BLAST of jgi.p|Trimin1|173992 vs. uniprot
Match: A0A7S2SSB0_9STRA (Katanin p60 ATPase-containing subunit A1 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSB0_9STRA)

HSP 1 Score: 161 bits (408), Expect = 4.680e-45
Identity = 76/87 (87.36%), Postives = 82/87 (94.25%), Query Frame = 1 
Query:    1 IERDIVDSGVNVTWDQIADLKDAKQLLQEAVVLPLWMPDYFKGIRRPWKGVLMFGPPGTGKTMLAKAVAAECRTTFFNVSASTLGSK 261
            +ERDIVD GV V WDQIADL +AK LLQEAVVLPLWMPDYFKGIRRPW+GVLMFGPPGTGKTMLAKA+A+ECRTTFFNVSAS+LGSK
Sbjct:  253 LERDIVDHGVAVGWDQIADLAEAKALLQEAVVLPLWMPDYFKGIRRPWRGVLMFGPPGTGKTMLAKAIASECRTTFFNVSASSLGSK 339
[Close]
BLAST of jgi.p|Trimin1|173992 vs. uniprot
Match: A0A7S4E3K1_9STRA (Katanin p60 ATPase-containing subunit A1 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E3K1_9STRA)

HSP 1 Score: 159 bits (401), Expect = 9.370e-45
Identity = 73/87 (83.91%), Postives = 81/87 (93.10%), Query Frame = 1 
Query:    1 IERDIVDSGVNVTWDQIADLKDAKQLLQEAVVLPLWMPDYFKGIRRPWKGVLMFGPPGTGKTMLAKAVAAECRTTFFNVSASTLGSK 261
            +ERD+VD+GV  TWD IADL+DAKQLLQEAVVLPLWMPD F+G+RRPWKGVLMFGPPGTGKTMLAKAVA EC+TTFFNVSA+TL SK
Sbjct:  163 VERDVVDTGVTTTWDDIADLRDAKQLLQEAVVLPLWMPDVFQGLRRPWKGVLMFGPPGTGKTMLAKAVAHECQTTFFNVSAATLSSK 249
[Close]
BLAST of jgi.p|Trimin1|173992 vs. uniprot
Match: A0A7S3HF63_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HF63_9STRA)

HSP 1 Score: 151 bits (381), Expect = 2.510e-43
Identity = 72/87 (82.76%), Postives = 79/87 (90.80%), Query Frame = 1 
Query:    1 IERDIVDSGVNVTWDQIADLKDAKQLLQEAVVLPLWMPDYFKGIRRPWKGVLMFGPPGTGKTMLAKAVAAECRTTFFNVSASTLGSK 261
            IE +I+D+ VNV+W+ IA L +AK LLQEAVVLPLWMPDYFKGIRRPWKGVLMFGPPGTGKTMLAKAVA+EC TTFFNVSASTL SK
Sbjct:  142 IESNILDTKVNVSWESIAGLGEAKALLQEAVVLPLWMPDYFKGIRRPWKGVLMFGPPGTGKTMLAKAVASECNTTFFNVSASTLSSK 228
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|173992 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZFA5_9STRA6.210e-63100.00P-loop containing nucleoside triphosphate hydrolas... [more]
A0A6H5K2D2_9PHAE5.630e-5195.35AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
F0Y1I1_AURAN1.300e-4888.51AAA domain-containing protein (Fragment) n=1 Tax=A... [more]
D8LRZ3_ECTSI1.820e-4894.25Katanin p60 ATPase-containing subunit A1 n=1 Tax=E... [more]
W7U5R9_9STRA1.300e-4588.51Katanin p60 ATPase-containing subunit A1 n=1 Tax=N... [more]
A0A4D9D8G0_9STRA4.050e-4588.51Katanin p60 ATPase-containing subunit A1 n=1 Tax=N... [more]
A0A7S3YD60_HETAK4.080e-4587.06Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2SSB0_9STRA4.680e-4587.36Katanin p60 ATPase-containing subunit A1 n=1 Tax=R... [more]
A0A7S4E3K1_9STRA9.370e-4583.91Katanin p60 ATPase-containing subunit A1 n=1 Tax=P... [more]
A0A7S3HF63_9STRA2.510e-4382.76Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_109contigContig_109:950..2673 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|173992|e_gw1.109.41.1
BRITEko00000,ko01000,ko04812
KEGG koko:K07767
EC3.6.4.3
Preferred nameKATNA1
Descriptionmicrotubule-severing ATPase activity
COG categoryC
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0554@1|root,KOG0738@2759|Eukaryota
Evalue2.98e-49
Seed ortholog2880.D8LRZ3
Hectar predicted targeting categoryother localisation
TranscriptId174314
TrackFilteredModels1
ProteinId173992
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173992gene_12966Tribonema minus UTEX_B_3156 geneContig_109 950..2673 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173992Trimin1|173992|e_gw1.109.41.1Tribonema minus UTEX_B_3156 polypeptideContig_109 950..2673 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12966_3exon_12966_3Tribonema minus UTEX_B_3156 exonContig_109 950..1061 -
exon_12966_2exon_12966_2Tribonema minus UTEX_B_3156 exonContig_109 1581..1690 -
exon_12966_1exon_12966_1Tribonema minus UTEX_B_3156 exonContig_109 2611..2673 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12966CDS_12966Tribonema minus UTEX_B_3156 CDSContig_109 2611..2673 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12966 ID=mRNA_12966|Name=jgi.p|Trimin1|173992|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=285bp|location=Sequence derived from alignment at Contig_109:950..2673- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATAGAAAGAGACATTGTGGACTCTGGCGTCAACGTCACCTGGGACCAGAT
TGCTGACCTCAAGGACGCGAAGCAGCTACTTCAAGAAGCAGTCGTGCTGC
CGCTGTGGATGCCCGACTACTTCAAGGGCATTCGCAGGCCGTGGAAGGGG
GTGCTCATGTTTGGCCCCCCAGGGACTGGCAAGACCATGCTGGCGAAGGC
CGTTGCGGCGGAGTGCCGCACCACATTCTTCAACGTCAGCGCGTCAACGC
TCGGCAGCAAGGTATGCATGTATAGCACCATTTAA
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protein sequence of jgi.p|Trimin1|173992

>Trimin1|173992|e_gw1.109.41.1 ID=Trimin1|173992|e_gw1.109.41.1|Name=jgi.p|Trimin1|173992|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=95bp
IERDIVDSGVNVTWDQIADLKDAKQLLQEAVVLPLWMPDYFKGIRRPWKG
VLMFGPPGTGKTMLAKAVAAECRTTFFNVSASTLGSKVCMYSTI*
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mRNA from alignment at Contig_109:950..2673-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12966 ID=mRNA_12966|Name=jgi.p|Trimin1|173992|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1724bp|location=Sequence derived from alignment at Contig_109:950..2673- (Tribonema minus UTEX_B_3156 )
ATAGAAAGAGACATTGTGGACTCTGGCGTCAACGTCACCTGGGACCAGAT
TGCTGACCTCAAGGTACATTGAAATTGCACGCGCACTGAAGACACATTGT
CACAAGGTACATGTAGACTCTGGTAGTAGCAAGCTTGCCGGGCACCATAT
GAGCCTTGTTGGGCCCTACGCTGGAGTTGCAGTGTAGAGCACTCAAGTTA
TGCGCTTTGGCAGAGCGAGCAGTGGTCAAGCACCAAAGAAACCCACCCTG
AAAAAGATAAAGTCATTGATTCACCCTTGCTGGCTTTGAGTTGAAGTGCA
AGCCGTACACATACTGATGCTTTGAATACCGGCACTCACAGGACCATTTT
GCCAACCTCAAGGTGATGTTGAACTGCAGCAATCGTCAACTTCAACAGGA
AGCTAGACAAGATCGCTGACTCCTGTCCTGAAGGTGACCATTGGGCCTGG
AATTCTTCTGTGTGGAGTACCAGTTGTACAGGTGCTTGAAGGTACTACTG
CCGGGAAGGTGGCGCCAACGCCGTTGACAGGCAAAGGCTGTGCCTGTTGC
CATTACAGGCGCAGAGCTTAAAAGCCTGCGCAAACCTGCTCGCGGACGCT
CAGAATCGCTAAACATTGCAATATACGTTGCAGTGCGCGCTATTGGCCTG
TGTTGAGGGGTGGCAAGCAGTGCTCATGTTGGAGCGTGATCATAAGCAAG
GTCTGTTCTGTGTGCATACTTCGACGCCCCCCGCAGCATGATGCTCATTA
TTGCAAGTACATGTCATCTACCCCGCAGTGTCTGTTGCCGCACATGTGCA
CGTGTCGCCTGACTGCGGAGTGCAGACTTGATGGCATCTTTGACCCCCCT
ATGTAAAAGGCCATGTTTGTCATACAAAATGTAATACCACCACGTCGATG
CACATGTATTGCTAAAATGCAGCATATTTGTCTCGCTGCTGATGCCACTT
CAATTCCTGCTTCAACTTGCGCTAATGCCTCAGGACGCGAAGCAGCTACT
TCAAGAAGCAGTCGTGCTGCCGCTGTGGATGCCCGACTACTTCAAGGGCA
TTCGCAGGCCGTGGAAGGGGGTGCTCATGTTTGGCCCCCCAGGGTGAGCC
GCTGTTTGCACTTGGAGACCATGTTGAAGTATTCATGGCATCTCATTGAA
GTTTCAGCTAGCAGACAATCACAGCAGCTCCCAGCTGCTCGACATGATCG
TGAAGAGTGTCGTCCAGTCACGACTTGCTGCATTCTGCCTTAACTCTTGC
ACAATTCCTTGGTAGCAGAGTGCCAAGGCAGATTATGCAGTCTGGCTCAT
CACGTAGCGCATCTGTGATTGCGTGTCAATGCCTCAGCCCACCGTCTGAC
GCGTTCATTATTTTTAGTGCCCATCACTAGCACTTGAGTGGATCGCTGCG
TAACGGGCACGTGATTGGGTCGCTTGCACAGGGCCTTAATGGTGCGACTA
TGCTCCTGTATCACTGCTGCTGAAGGTATTGTACACTTCAACATACTTCA
ACATACTTGACATAGCAAATACAAGTAGAGCTCTTATTCGGCGTCAGCTG
CTGGCATGTCCCTGATGAACGTCCTCTGAAACGCACGTTGGGCTGCTCAT
TGATCAACGCAGGACTGGCAAGACCATGCTGGCGAAGGCCGTTGCGGCGG
AGTGCCGCACCACATTCTTCAACGTCAGCGCGTCAACGCTCGGCAGCAAG
GTATGCATGTATAGCACCATTTAA
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Coding sequence (CDS) from alignment at Contig_109:950..2673-

>mRNA_12966 ID=mRNA_12966|Name=jgi.p|Trimin1|173992|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=285bp|location=Sequence derived from alignment at Contig_109:950..2673- (Tribonema minus UTEX_B_3156 )
ATAGAAAGAGACATTGTGGACTCTGGCGTCAACGTCACCTGGGACCAGAT
TGCTGACCTCAAGGACGCGAAGCAGCTACTTCAAGAAGCAGTCGTGCTGC
CGCTGTGGATGCCCGACTACTTCAAGGGCATTCGCAGGCCGTGGAAGGGG
GTGCTCATGTTTGGCCCCCCAGGGACTGGCAAGACCATGCTGGCGAAGGC
CGTTGCGGCGGAGTGCCGCACCACATTCTTCAACGTCAGCGCGTCAACGC
TCGGCAGCAAGGTATGCATGTATAGCACCATTTAA
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