mRNA_12939 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|170139
Unique Name	mRNA_12939
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|170139 vs. uniprot
Match: A0A836C9V2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9V2_9STRA)

HSP 1 Score: 336 bits (862), Expect = 1.120e-115
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 1

Query:    1 AGGSVPVLEWLLARGALDADHLCTHAARYGQLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAQNTPWTEPDIAIDAAYSGNVAMLAWLQSAVATPWDAQCLQMMLVEAGEGGHLEAAKWLRAIGAPWPPAFWQVAPPPLSTMVGWQLATLQWARREGCPWGDWNSMVCELVYGMQPDVVXXXXXXXXPCECPRDAIIA 609
            AGGSVPVLEWLLARGALDADHLCTHAARYGQLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAQNTPWTEPDIAIDAAYSGNVAMLAWLQSAVATPWDAQCLQMMLVEAGEGGHLEAAKWLRAIGAPWPPAFWQVAPPPLSTMVGWQLATLQWARREGCPWGDWNSMVCELVYGMQPDVVXXXXXXXXPCECPRDAIIA
Sbjct:    1 AGGSVPVLEWLLARGALDADHLCTHAARYGQLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAQNTPWTEPDIAIDAAYSGNVAMLAWLQSAVATPWDAQCLQMMLVEAGEGGHLEAAKWLRAIGAPWPPAFWQVAPPPLSTMVGWQLATLQWARREGCPWGDWNSMVCELVYGMQPDVVXXXXXXXXPCECPRDAIIA 203

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|170139 vs. uniprot

BLAST of jgi.p|Trimin1|170139 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836C9V2_9STRA	1.120e-115	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_69	contig	Contig_69:454805..457615 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|170139\|e_gw1.69.10.1
Hectar predicted targeting category	other localisation
TranscriptId	170461
Track	FilteredModels1
ProteinId	170139

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|170139	gene_12939	Tribonema minus UTEX_B_3156	gene	Contig_69 454805..457615 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_12939_1	exon_12939_1	Tribonema minus UTEX_B_3156	exon	Contig_69 454805..454937 +
exon_12939_2	exon_12939_2	Tribonema minus UTEX_B_3156	exon	Contig_69 456616..456977 +
exon_12939_3	exon_12939_3	Tribonema minus UTEX_B_3156	exon	Contig_69 457499..457615 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_12939	CDS_12939	Tribonema minus UTEX_B_3156	CDS	Contig_69 454805..454937 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|170139	Trimin1\|170139\|e_gw1.69.10.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_69 454805..457615 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_69:454805..457615+
coding sequence from alignment at Contig_69:454805..457615+

spliced messenger RNA

>mRNA_12939 ID=mRNA_12939|Name=jgi.p|Trimin1|170139|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=612bp|location=Sequence derived from alignment at Contig_69:454805..457615+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCAGGCGGCAGCGTTCCAGTGTTGGAATGGCTGCTTGCACGTGGTGCTCT
CGACGCTGACCACCTCTGCACGCACGCCGCTCGCTACGGCCAGCTGGCGG
CGCTGCAGTGGCTGCACGAGCGCGGCATCACAGGCGACGAGACCACGTGC
AACACCGCCGCGCGCCGCGGCGACCTCCCCACCCTCCAGTGGTTGCGCGC
CCAGAACACCCCCTGGACGGAACCCGACATTGCCATCGACGCGGCCTACA
GCGGCAACGTAGCAATGCTCGCGTGGCTTCAGAGCGCCGTCGCGACACCC
TGGGACGCGCAGTGCCTGCAGATGATGCTGGTGGAGGCGGGGGAGGGGGG
GCACCTGGAGGCCGCCAAGTGGCTGCGTGCCATTGGCGCGCCGTGGCCCC
CGGCCTTCTGGCAGGTGGCGCCCCCGCCTCTCAGCACCATGGTCGGATGG
CAGCTCGCCACGCTGCAGTGGGCGCGCAGGGAGGGCTGCCCATGGGGCGA
CTGGAACAGCATGGTGTGCGAGCTCGTGTACGGCATGCAGCCCGATGTCG
TTGACTGGGCGCACAAGAACGGCTGTCCCTGCGAGTGCCCGCGCGACGCC
ATCATCGCCTGA

protein sequence of jgi.p|Trimin1|170139

>Trimin1|170139|e_gw1.69.10.1 ID=Trimin1|170139|e_gw1.69.10.1|Name=jgi.p|Trimin1|170139|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=204bp
AGGSVPVLEWLLARGALDADHLCTHAARYGQLAALQWLHERGITGDETTC
NTAARRGDLPTLQWLRAQNTPWTEPDIAIDAAYSGNVAMLAWLQSAVATP
WDAQCLQMMLVEAGEGGHLEAAKWLRAIGAPWPPAFWQVAPPPLSTMVGW
QLATLQWARREGCPWGDWNSMVCELVYGMQPDVVDWAHKNGCPCECPRDA
IIA*

mRNA from alignment at Contig_69:454805..457615+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_12939 ID=mRNA_12939|Name=jgi.p|Trimin1|170139|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2811bp|location=Sequence derived from alignment at Contig_69:454805..457615+ (Tribonema minus UTEX_B_3156 )
GCAGGCGGCAGCGTTCCAGTGTTGGAATGGCTGCTTGCACGTGGTGCTCT
CGACGCTGACCACCTCTGCACGCACGCCGCTCGCTACGGCCAGCTGGCGG
CGCTGCAGTGGCTGCACGAGCGCGGCATCACAGGTGCGTCACTTGAACTT
ATCACTTGAGGTTGATATTCGAAGTAGTTGACGCACGCCGCTTGCCACGG
CGAGCTGGCGGCGCTGCAGTGGCTGCACGAGCGCGGCATCACAGGTGTGG
CACTTGAAGTTAATGCTTGGAAGTATCCATAGTTGAAACTTTGTACAAAG
AAGCACGATGCTACTGCTGTGATCTGTCAAAGGCGTCGTGATGATTGCCT
GCGCCCTGCCTGGACCGGAGCAGTGCACCATGTGGCGCTGCTGTCACTGC
AGACGGTGCCCATTTTGTGTTGTGCACAACTTTCCCCCTTTTATGACGTA
TCCAATCACACCAAGTACGGTCAATACGCCCCGACTTTCCACTTGCGTTG
TCAATTTGACAACAATACACTTTTGCGGCACTTGCATGCACAAGAGCTTA
AGGTTGTTGAGGTTGTGATTGAAGTTGTGTCCATTCTAGAGTTGTCAGCC
GATGCCTCTTGTCGGCTTGTTCGTCACCGGGGTCCCAGTCGGCTCGGCTA
CACCGGCTAGCCGATGCTTGGTATATGAGTCGGCTTTTCCACCGGCTTGT
GGACGGCTGGGGAGATTGGAGCCGGCTTTGAACGGTATTTTAAAGTGCCG
GGCAGCGCAGCGCGTTTTGGTTTATCCTTTCACACTCCTCACGAGCCTCG
CTTTCCACTACTCTCGCACTCATCTGACACTGTAAAGCTGATGCAGTACC
GATGCTGCTCAGGCAGCCACACCCAGAGCATACTGAGCGCGCAGGCACCC
GCGTTCCCACACTCAGCTCGGTTCAATTATGAGTTGAAGTTGGTCGCGGT
TTGGGCTAGCGTACTTTAGTAACCTGTACTTCACGCCTTCGCGGCAGCAT
GTGTGACGAATGCTTTCCGTACTCCCATGCTCAGCAGACTGCATCAATAG
CATCAGCTCTGCGCATCTCTGGTGTGTTTGTTGAGTCAGAAGCTGGTGAT
TCGCGTCAGGCAGCATCGTAGTGAGGCTGCATGGTCCGTTGCCATCTGCA
AAGCACCTAACCGCCTCATTGGGTGCCTGAAGTCACCCCAGCAGCTCCTG
CTTGCTCGTTGGCTGCATCGCGCATTTTTCAAGACAAGCCGACAAACAGC
CGGGGTATCGATCAGCTCAGCAACCGGCTACACCGGCTAGCCGAAGCCGA
TCGGCTTAGCCGGTGGTCGGCTGACAACTCTAGTCAATTCGCAGCAACCG
CACTTGCTGGCATGTCTGTGGCCTGCAACCACTGTCTAACTTCCTCAGGA
GCTTGTCCACTGTCAGCCATGGACATTACTGACATTCTGGCAGGTCTCCA
TTTCCTTGTCACACGAGCAGTGCGGTGCAGTTGTCGCATCGTGAAGACCA
TGGCACCTCCATGAGTTTCAAACACATTCGGCTTCATTCCTGCCACCGAA
ACTTCCTCCTGAAGGCGGCGTGACAGCGCTCGCGCTGCAACAGCAGCGAC
TCTCCCCTCTCTGTGCCACTTCACCATTCTCTCGAAGAACATGCACAGGC
ACACTGCCGGCACCGCTGACGCTGCATCTTCCGCTCGTCTGCTGGCACGT
CAACCTCAACTCCAACTTCAACTTCAGGCGACGAGACCACGTGCAACACC
GCACTGACGCCGCTATGCTATCTTCCGCTCTTTTGCTGTGGCATGTCAAC
TTCAACTTCAGGCGACGAGACCACGTGCAACACCGCCGCGCGCCGCGGCG
ACCTCCCCACCCTCCAGTGGTTGCGCGCCCAGAACACCCCCTGGACGGAA
CCCGACATTGCCATCGACGCGGCCTACAGCGGCAACGTAGCAATGCTCGC
GTGGCTTCAGAGCGCCGTCGCGACACCCTGGGACGCGCAGTGCCTGCAGA
TGATGCTGGTGGAGGCGGGGGAGGGGGGGCACCTGGAGGCCGCCAAGTGG
CTGCGTGCCATTGGCGCGCCGTGGCCCCCGGCCTTCTGGCAGGTGGCGCC
CCCGCCTCTCAGCACCATGGTCGGATGGCAGCTCGCCACGCTGCAGTGGG
CGCGCAGGGAGGGCTGCCCATGGGTGAGTCACTGTTGAAGTTTGTGATTG
AAGTGTGTTGCGGCGCGGCGCGCACTTTCGTTGCGGAAGCGCATCGCCGC
CAGGGGTTGCGCAAGATTGCCACCATCAGAAGCACGCATGTGTTTCGCGG
TTGGCTGGCAGCTCTGCATGCAGTGGAGTATTGGGGTTAATTAAGACCAG
TAGGAGTAGTTCCATGGCTTGCATGTTTGATGTTTGCAGGATCGACCCTT
CTGTTGCCTGGCTGCAACTCGGTGTCAGGCATGGTGTTGGTCAGCTGAAA
CAGCACATTTGCACTATTTGCCGGTGCAACTCTTGCCTCGATCACGAATG
GCATCGAAACTGCTATCACCGCCAGCTGATTTCAACAGGATCGATCATTC
CTTGGCTTCTTGTTTACAACAATATCATGCAGTGACACTTCGCGTCTGTC
GCCACATGGCACAGCAACCGCCACATGACCAGATGCATGCGCGCGACGTC
TTTGCTCACGTGCATCTGCCCCGCCTCCCGTCCAACAACCACAGGGCGAC
TGGAACAGCATGGTGTGCGAGCTCGTGTACGGCATGCAGCCCGATGTCGT
TGACTGGGCGCACAAGAACGGCTGTCCCTGCGAGTGCCCGCGCGACGCCA
TCATCGCCTGA

Coding sequence (CDS) from alignment at Contig_69:454805..457615+

>mRNA_12939 ID=mRNA_12939|Name=jgi.p|Trimin1|170139|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=612bp|location=Sequence derived from alignment at Contig_69:454805..457615+ (Tribonema minus UTEX_B_3156 )
GCAGGCGGCAGCGTTCCAGTGTTGGAATGGCTGCTTGCACGTGGTGCTCT
CGACGCTGACCACCTCTGCACGCACGCCGCTCGCTACGGCCAGCTGGCGG
CGCTGCAGTGGCTGCACGAGCGCGGCATCACAGGCGACGAGACCACGTGC
AACACCGCCGCGCGCCGCGGCGACCTCCCCACCCTCCAGTGGTTGCGCGC
CCAGAACACCCCCTGGACGGAACCCGACATTGCCATCGACGCGGCCTACA
GCGGCAACGTAGCAATGCTCGCGTGGCTTCAGAGCGCCGTCGCGACACCC
TGGGACGCGCAGTGCCTGCAGATGATGCTGGTGGAGGCGGGGGAGGGGGG
GCACCTGGAGGCCGCCAAGTGGCTGCGTGCCATTGGCGCGCCGTGGCCCC
CGGCCTTCTGGCAGGTGGCGCCCCCGCCTCTCAGCACCATGGTCGGATGG
CAGCTCGCCACGCTGCAGTGGGCGCGCAGGGAGGGCTGCCCATGGGGCGA
CTGGAACAGCATGGTGTGCGAGCTCGTGTACGGCATGCAGCCCGATGTCG
TTGACTGGGCGCACAAGAACGGCTGTCCCTGCGAGTGCCCGCGCGACGCC
ATCATCGCCTGA