mRNA_12890 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|88315 vs. uniprot
Match: A0A836C8M6_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8M6_9STRA) HSP 1 Score: 605 bits (1561), Expect = 4.680e-218 Identity = 323/323 (100.00%), Postives = 323/323 (100.00%), Query Frame = 1
Query: 1 EERAQLVAEAQAALYPSLASALFRAGARRRALAALEDMARGRVAISIDAANRLIRAAQRRRDLRAVFAVLDAMTAARVAPNDDTYEAVANAAVRSVEFVTGAVSMETLPRKWLPEAAFIGRSNVGKSSLVNMVCNRKALAYTSKRPGKTQQLNFFEVNGGAAAAGAGDGEAHAFYLVDMPGHGYAKVSEQLRTSWQDLLKQYVAQRRSLRVLFHLLDGRHGPVGHDKAIMKEMARLPSYARYVIVLTKADKQDNTVSAGVMAATITALREAGVENAPVVITSAETKLGRDAMWRYLRLAALDRSGGGRAAATPAEHGYGKEVE 969
EERAQLVAEAQAALYPSLASALFRAGARRRALAALEDMARGRVAISIDAANRLIRAAQRRRDLRAVFAVLDAMTAARVAPNDDTYEAVANAAVRSVEFVTGAVSMETLPRKWLPEAAFIGRSNVGKSSLVNMVCNRKALAYTSKRPGKTQQLNFFEVNGGAAAAGAGDGEAHAFYLVDMPGHGYAKVSEQLRTSWQDLLKQYVAQRRSLRVLFHLLDGRHGPVGHDKAIMKEMARLPSYARYVIVLTKADKQDNTVSAGVMAATITALREAGVENAPVVITSAETKLGRDAMWRYLRLAALDRSGGGRAAATPAEHGYGKEVE
Sbjct: 1 EERAQLVAEAQAALYPSLASALFRAGARRRALAALEDMARGRVAISIDAANRLIRAAQRRRDLRAVFAVLDAMTAARVAPNDDTYEAVANAAVRSVEFVTGAVSMETLPRKWLPEAAFIGRSNVGKSSLVNMVCNRKALAYTSKRPGKTQQLNFFEVNGGAAAAGAGDGEAHAFYLVDMPGHGYAKVSEQLRTSWQDLLKQYVAQRRSLRVLFHLLDGRHGPVGHDKAIMKEMARLPSYARYVIVLTKADKQDNTVSAGVMAATITALREAGVENAPVVITSAETKLGRDAMWRYLRLAALDRSGGGRAAATPAEHGYGKEVE 323
BLAST of jgi.p|Trimin1|88315 vs. uniprot
Match: A0A6H5KPF6_9PHAE (EngB-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPF6_9PHAE) HSP 1 Score: 335 bits (858), Expect = 1.440e-106 Identity = 185/305 (60.66%), Postives = 223/305 (73.11%), Query Frame = 1
Query: 1 EERAQLVAEAQAALYPSLASALFRAGARRRALAALEDMARGRVAISIDAANRLIRAAQRRRDLRAVFAVLDAMTAARVAPNDDTYEAVANAAVRSVEFVTGAVSMETLPRK-WLPEAAFIGRSNVGKSSLVNMVCNRKALAYTSKRPGKTQQLNFFEVNGGAAAAGAGDGEAHAFYLVDMPGHGYAKVSEQLRTSWQDLLKQYVAQRRSLRVLFHLLDGRHGPVGHDKAIMKEMARLPSYARYVIVLTKADKQDNTVSAGVMAATITALREAGVENAPVVITSAETKLGRDAMWRYLRLAALDRS 912
+E A+ A ++YP+L +A R G R A+ LE MA R+ + AANRL++ +RRDL AVF VLD M AA V +D+TYE +ANAAVR V+FV GAVSM TLP++ LPEAAFIGRSNVGKSSL+NMVCNRKALA+TSKRPGKTQQ N+F +N + ++FYLVD+PG GYAKV E+ R W L + Y+ +R SLRVLFHL+DGRHGPVG D AIMK MA LP ARYV+VLTKADK DN+VS V+ + ALREAGV PVV+TSA +KLGRD MWRYLRLAALD+S
Sbjct: 321 DELAEEFVSAATSVYPNLITAFSRNGKRGDAMRLLEAMANARLPVKTPAANRLLQGFHKRRDLEAVFKVLDVMAAAGVDGDDETYEWLANAAVRGVDFVKGAVSMATLPKEPVLPEAAFIGRSNVGKSSLINMVCNRKALAFTSKRPGKTQQFNYFLMN---------NNTENSFYLVDLPGMGYAKVPEKQRKEWSTLFRSYITRRSSLRVLFHLIDGRHGPVGQDHAIMKLMAELPDTARYVVVLTKADKSDNSVSRQVLEGVVAALREAGVSRTPVVLTSAASKLGRDGMWRYLRLAALDKS 616
BLAST of jgi.p|Trimin1|88315 vs. uniprot
Match: A0A6V1PQB5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PQB5_HETAK) HSP 1 Score: 249 bits (635), Expect = 8.910e-79 Identity = 133/227 (58.59%), Postives = 166/227 (73.13%), Query Frame = 1
Query: 229 RVAPNDDTYEAVANAAVRSVEFVTGAVSMETLPRKWLPEAAFIGRSNVGKSSLVNMVCNRKALAYTSKRPGKTQQLNFFEVNGGAAAAGAGDGEAHAFYLVDMPGHGYAKVSEQLRTSWQDLLKQYVAQRRSLRVLFHLLDGRHGPVGHDKAIMKEMAR--LPSYARYVIVLTKADKQDNTVSAGVMAATITALREAGVENAPVVITSAETKLGRDAMWRYLRLAAL 903
R +P+D+T+E +ANAA +++EFVTG+VSMETLP+ LPEAA IG+SNVGKSSLVNM+CNRK LA+TSK+PGKTQQ N+F++N G+ H FYLVD+PG GYAKV + LR W L QY+++R+ L+VLFHL+D RHGPV D IM MAR L A+YV+VLTKADK+D V V AA AL APVVITSAE++LGRDAMW +L+ A L
Sbjct: 9 RTSPDDETFEFLANAAAKNIEFVTGSVSMETLPKTRLPEAAIIGKSNVGKSSLVNMICNRKNLAFTSKKPGKTQQFNYFKINSGSE---------HEFYLVDVPGLGYAKVPKHLRDQWVQFLTQYISERKGLKVLFHLIDSRHGPVETDLEIMG-MARDHLAPGAQYVVVLTKADKKDGKVPRAVRAAVAAALEAEYGSGAPVVITSAESRLGRDAMWHHLKRATL 225
BLAST of jgi.p|Trimin1|88315 vs. uniprot
Match: A0A7S3L5M9_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L5M9_9STRA) HSP 1 Score: 236 bits (602), Expect = 2.420e-69 Identity = 139/253 (54.94%), Postives = 173/253 (68.38%), Query Frame = 1
Query: 196 VFAVLDAMTAARVAPNDDTYEAVANAAVRSVEFVTGAVSMETLPRKWLPEAAFIGRSNVGKSSLVNMVCNRKALAYTSKRPGKTQQLNFFEVNGGAAAAGA--------GDGEAHAFYLVDMPGHGYAKVSEQLRTSWQDLLKQYVAQRR-SLRVLFHLLDGRHGPVGHDKAIMKEMAR-LPSYARYVIVLTKADK------QDNT--VSAGVMAATITALREAGVENAPVVITSAETKLGRDAMWRYLRLAA 900
V+AVL+AM + +D YE ++NA VR V F+TGAV+ME P EAAF+GRSNVGKSSLVNMV NRK+LAYTSKRPGKTQQ NFF VN G+ +A +FYLVD+PG GYAKV E+ R W + +Y++ R +L+VLFHL+DGRHGP D AIMK+++ LP Y RYV+VLTK+DK + NT VS VM + ++ GV +APVV+TSAETKLGRDA+W YLRLAA
Sbjct: 349 VYAVLNAMLSVPSENSDRVYELLSNALVRRVIFITGAVAMEGCPPADRGEAAFVGRSNVGKSSLVNMVTNRKSLAYTSKRPGKTQQFNFFAVNDKPGREKEIKYGDDVDGEKDADSFYLVDLPGFGYAKVPEKQRQQWASFMDEYISSRGDTLKVLFHLVDGRHGPTDEDGAIMKKVSEVLPPYTRYVVVLTKSDKNVKGPNKTNTGKVSIDVMESLGKTMKANGVGSAPVVMTSAETKLGRDAVWNYLRLAA 601
BLAST of jgi.p|Trimin1|88315 vs. uniprot
Match: A0A4D9D8J4_9STRA (EngB-type G domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8J4_9STRA) HSP 1 Score: 234 bits (598), Expect = 3.110e-68 Identity = 132/253 (52.17%), Postives = 166/253 (65.61%), Query Frame = 1
Query: 151 NRLIRAAQRRRDLRAVFAVLDAMTAARVAPNDDTYEAVANAAVRSVEFVTGAVSMETLPRKWLPEAAFIGRSNVGKSSLVNMVCNRKALAYTSKRPGKTQQLNFFEVNGGAAAAGAGDGEAHAFYLVDMPGHGYAKVSEQLRTSWQDLLKQYVAQRRSLRVLFHLLDGRHGPVGHDKAIMKEM-ARLPSYARYVIVLTKADKQDNTVSAGVMAATITALREAGV-ENAPVVITSAETKLGRDAMWRYLRLAAL 903
N L+R ++R + A+F LD M P+ D+Y+ +AN VRSV+FV GAVSMETLP + LPE FIGRSNVGKSSL+NMVCNRK LAY SKRPGKTQQ N+F VN D AFY+VD+PG GYAKV ++ W + Y+AQR SL+V+FHL+D RHGP+ D M+ M A L +YVI+LTKADK+D VS + AL + E PV++TSA +LGRD +WRYLRLA +
Sbjct: 415 NELLRLQGKQRRVDAMFVTLDLMREGGAHPDTDSYQHLANTLVRSVDFVAGAVSMETLPTRMLPEVCFIGRSNVGKSSLLNMVCNRKDLAYVSKRPGKTQQFNYFLVN---------DKTKSAFYMVDVPGVGYAKVPLAEKSKWASFFESYLAQRSSLKVVFHLIDSRHGPLAQDLMTMEAMRASLRPGVQYVIILTKADKKDGKVSPSLKQQVADALDAHQLKETTPVLVTSAVNRLGRDEVWRYLRLAVI 658
BLAST of jgi.p|Trimin1|88315 vs. uniprot
Match: A0A7S2FR04_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FR04_9STRA) HSP 1 Score: 231 bits (588), Expect = 4.490e-68 Identity = 137/264 (51.89%), Postives = 182/264 (68.94%), Query Frame = 1
Query: 133 ISIDAANRLIRAAQRRRDLRAVFAVLDAMTAARVAPNDDTYEAVANAAVRSVEFVTGAVSMETLPRKWLPEAAFIGRSNVGKSSLVNMVCNRKALAYTSKRPGKTQQLNFFEVNGGAAAAGAGDGEAHAFYLVDMPGHGYAKVSEQLRTSWQDLLKQYVAQRRSLRVLFHLLDGRHGPVGHDKAIMKEMARLPSYAR--YVIVLTKADKQD----NTVSAGVMAATITALREA-GVENA---PVVITSAETKLGRDAMWRYLRL 894
+SI+ N+L++ R L A+F ++D M+ + ND T+E VANAAVRSV+FVT AVSM+TLP +PE AFIGRSNVGKSSLVNM+CNRKALAYTSK PGKTQQ N+F +N + D F++VD+PG GYAKV + +R +W + + QY+ +R LRV+FHL+D R GPV D+ I++ M ++ + R YVIVLTK DK+D T+ A MA+ AL ++ GVE A P+V TS+ ++LGRD MWRYLRL
Sbjct: 264 VSIELFNKLLKEFASARHLPALFHLMDVMSDTKAVANDITFEIVANAAVRSVDFVTSAVSMDTLPAPLIPEVAFIGRSNVGKSSLVNMLCNRKALAYTSKTPGKTQQFNYFVINEASNWNPKCD-----FHMVDLPGLGYAKVPQAVRKNWVEFMTQYLEEREPLRVVFHLMDARLGPVAQDEEIIRLMEQISTRERFQYVIVLTKVDKKDVNEKGTLVA--MASVQRALDDSFGVEAASQIPIVATSSISRLGRDQMWRYLRL 520
BLAST of jgi.p|Trimin1|88315 vs. uniprot
Match: A0A7S3V5Y5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V5Y5_9STRA) HSP 1 Score: 231 bits (589), Expect = 9.820e-68 Identity = 132/252 (52.38%), Postives = 167/252 (66.27%), Query Frame = 1
Query: 196 VFAVLDAMTAARVAPNDDTYEAVANAAVRSVEFVTGAVSMETLPRKWLPEAAFIGRSNVGKSSLVNMVCNRKALAYTSKRPGKTQQLNFFEVNGGAAAAGA--------GDGEAHAFYLVDMPGHGYAKVSEQLRTSWQDLLKQYVAQRRSLRVLFHLLDGRHGPVGHDKAIMKEMA-RLPSYARYVIVLTKADKQ---DNTVSAGVMAATIT-----ALREAGVENAPVVITSAETKLGRDAMWRYLRLAA 900
V+ VL AMT +D TYEA++NA VR F+TGAVSME P E F+GRSNVGKSSLVNMV NRK+LAYTSKRPGKTQQ N+F VN G+ + AFY++D+PG G+AKV E+ R W D L +Y+ R++LRV+FHL+DGRHGP+ D IMK++ + P +YVIVLTKADK NT ++G + + A +E GV AP+++TSAETKLGRD MWRY+RLAA
Sbjct: 317 VYCVLKAMTTFPSDNDDRTYEALSNALVRRTLFITGAVSMEGCPDADRGEVVFMGRSNVGKSSLVNMVTNRKSLAYTSKRPGKTQQFNYFAVNDKPGREKEVRYGDEVRGEKDPDAFYILDVPGFGFAKVPEKQRQEWSDFLSEYIETRKTLRVIFHLIDGRHGPIDEDFNIMKQVGEQKPKGVQYVIVLTKADKNIKGPNTTNSGKVQKKVLDKLRIAAKENGVGTAPILLTSAETKLGRDDMWRYMRLAA 568
BLAST of jgi.p|Trimin1|88315 vs. uniprot
Match: A0A7S2XQU2_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XQU2_9STRA) HSP 1 Score: 223 bits (567), Expect = 1.190e-67 Identity = 126/252 (50.00%), Postives = 166/252 (65.87%), Query Frame = 1
Query: 196 VFAVLDAMTAARVAPNDDTYEAVANAAVRSVEFVTGAVSMETLPRKWLPEAAFIGRSNVGKSSLVNMVCNRKALAYTSKRPGKTQQLNFFEVNGGAAAAGA--------GDGEAHAFYLVDMPGHGYAKVSEQLRTSWQDLLKQYVAQRRSLRVLFHLLDGRHGPVGHDKAIMKEMARLP-SYARYVIVLTKADKQDN--------TVSAGVMAATITALREAGVENAPVVITSAETKLGRDAMWRYLRLAA 900
V++VL+AMT +D TYEA++NA VR FVTGAV M P EA FIGRSNVGKSSLVNMV NRK+LAYTSKRPGKTQQ NFF VN G+ + +FY+VD+PG G+AKV ++++ W D + +Y+++R+++RV+FHL+D RHGP+ D IM+ + + +YV+VLTKADK VS+ VM A++ V NAPV++TSA+TKLGRD MWRY+RLAA
Sbjct: 36 VYSVLNAMTTFPSDNSDRTYEALSNALVRRTLFVTGAVDMTGCPEADRGEAVFIGRSNVGKSSLVNMVTNRKSLAYTSKRPGKTQQFNFFTVNDKPDREKEFKYGDFVPGEKDPDSFYIVDLPGVGFAKVPQKIKQEWADFMSEYISKRKTIRVIFHLVDARHGPIDEDMRIMQTIGQNSIKNTKYVVVLTKADKNTKGASSTSGGRVSSDVMDKLREAMKANKVANAPVLLTSAQTKLGRDEMWRYMRLAA 287
BLAST of jgi.p|Trimin1|88315 vs. uniprot
Match: A0A2V3IQZ2_9FLOR (Putative GTP-binding protein EngB n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQZ2_9FLOR) HSP 1 Score: 226 bits (576), Expect = 2.070e-66 Identity = 139/305 (45.57%), Postives = 187/305 (61.31%), Query Frame = 1
Query: 1 EERAQLVAEAQAALYPSLASALFRAGARRRALAALEDMARG------RVAISIDAANRLIRAAQRRRDLRAVFAVLDAMTAARVAPNDDTYEAVANAAVRSVEFVTGAVSMETLPRKWLPEAAFIGRSNVGKSSLVNMVCNRKALAYTSKRPGKTQQLNFFEVNGGAAAAGAGDGEAHAFYLVDMPGHGYAKVSEQLRTSWQDLLKQYVAQRRSLRVLFHLLDGRHGPVGHDKAIMKEMARLPSYARYVIVLTKADKQDNT-VSAGVMAATITALREAGVE-NAPVVITSAETKLGRDAMWRYLR 891
EE + +++ A L ++ S L A+ L +MARG A+ I N IR + + L +VF VLD + A+V P+++T+E +ANAAVR V FV GAVSM+TLP E AF+GRSNVGKSSLVNM+CNRKALAY S RPGKTQQ N+F VN + FYLVD+PG GYAKV ++ W ++QY+ R SLR++FHL+DGRHG + D+ +M+E+A +YV+VLTK DK D VM T AL G + P+V+TSA ++LGRD MWR+++
Sbjct: 206 EENRERLSQVMAVLLSAVKSLL--ESGEANAIPQLIEMARGVAEGGKNAAVEIGLYNTAIRMLGKNKMLESVFEVLDMVRLAQVKPDNETFEFLANAAVRQVRFVKGAVSMDTLPEPLGAEVAFVGRSNVGKSSLVNMICNRKALAYVSGRPGKTQQFNYFLVNERSPET--------QFYLVDLPGVGYAKVPIPVKEEWLRFMRQYLKHRTSLRIVFHLIDGRHGALADDEQLMQEIAGYGKGLQYVLVLTKMDKADKQRAKRSVMDKTRAALVRNGCSPDIPIVLTSASSRLGRDDMWRHMQ 500
BLAST of jgi.p|Trimin1|88315 vs. uniprot
Match: A0A7S4JVK0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JVK0_9STRA) HSP 1 Score: 229 bits (583), Expect = 2.740e-66 Identity = 134/252 (53.17%), Postives = 168/252 (66.67%), Query Frame = 1
Query: 196 VFAVLDAMTAARVAPNDDTYEAVANAAVRSVEFVTGAVSMETLPRKWLPEAAFIGRSNVGKSSLVNMVCNRKALAYTSKRPGKTQQLNFFEVNGGAAAAGA--------GDGEAHAFYLVDMPGHGYAKVSEQLRTSWQDLLKQYVAQRRSLRVLFHLLDGRHGPVGHDKAIMKEMAR-LPSYARYVIVLTKADKQ---DNTVSAG-VMAATITALREA----GVENAPVVITSAETKLGRDAMWRYLRLAA 900
V++VLDAMT ND TYEA++NA VR FVTGAV M P EA FIGRSNVGKSSLVNMV NRK+LAYTSKRPGKTQQ NFF VN G+ +A +FY+VD+PG G+AKV +Q R +W DL +Y+ R++L+V+FHL+D RHGP D+ IMK++ L +YV+VLTKADK +T ++G V + + LRE V +AP ++TS+ETKLGRD MWRYLRLAA
Sbjct: 381 VYSVLDAMTTFPSDNNDKTYEALSNALVRRTLFVTGAVDMVGCPAADRGEAVFIGRSNVGKSSLVNMVTNRKSLAYTSKRPGKTQQFNFFAVNDKPEREREIKYGDVIPGERDADSFYIVDLPGFGFAKVPQQQRQAWTDLFTEYIGSRKTLKVVFHLVDARHGPTDEDERIMKQIGETLSKNVKYVVVLTKADKNVKGASTKNSGRVTKSVLEKLRETMKLYKVGSAPAILTSSETKLGRDDMWRYLRLAA 632 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|88315 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_12890 ID=mRNA_12890|Name=jgi.p|Trimin1|88315|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=999bp|location=Sequence derived from alignment at Contig_73:607910..617188- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GAGGAGAGGGCGCAGCTGGTGGCGGAGGCGCAAGCCGCGCTGTACCCGAGback to top protein sequence of jgi.p|Trimin1|88315 >Trimin1|88315|CE88314_119 ID=Trimin1|88315|CE88314_119|Name=jgi.p|Trimin1|88315|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=324bp EERAQLVAEAQAALYPSLASALFRAGARRRALAALEDMARGRVAISIDAAback to top mRNA from alignment at Contig_73:607910..617188- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_12890 ID=mRNA_12890|Name=jgi.p|Trimin1|88315|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=9279bp|location=Sequence derived from alignment at Contig_73:607910..617188- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_73:607910..617188- >mRNA_12890 ID=mRNA_12890|Name=jgi.p|Trimin1|88315|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=972bp|location=Sequence derived from alignment at Contig_73:607910..617188- (Tribonema minus UTEX_B_3156 )back to top |