mRNA_12854 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|350811
Unique NamemRNA_12854
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|350811 vs. uniprot
Match: A0A835YU23_9STRA (Meiotic nuclear division protein 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU23_9STRA)

HSP 1 Score: 394 bits (1011), Expect = 1.510e-134
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 1 
Query:    1 MVRKALSVDEKKERLLSIFHTTKEVLNLKELEKHAGRAGIVTNTVKDVNAELVNDGIVDSDKIGASNFFWAFPSKAVLTHVNNIASLKEQIETTHASLEDAKRKGEELGGARVDPSLGXXXXXXXXDCDERRAKLQRLAEEREREAALRADAEQLKXXXXXXXXXXXXQLRERXXXXXXXXXXXXXNDPKELERVRAEVEGARERANLWTDNLWAIKAFMVKKQGLTGKEVDRMLGLKEDFDYV 732
            MVRKALSVDEKKERLLSIFHTTKEVLNLKELEKHAGRAGIVTNTVKDVNAELVNDGIVDSDKIGASNFFWAFPSKAVLTHVNNIASLKEQIETTHASLEDAKRKGEELGGARVDPSLGXXXXXXXXDCDERRAKLQRLAEEREREAALRADAEQLKXXXXXXXXXXXXQLRERXXXXXXXXXXXXXNDPKELERVRAEVEGARERANLWTDNLWAIKAFMVKKQGLTGKEVDRMLGLKEDFDYV
Sbjct:    1 MVRKALSVDEKKERLLSIFHTTKEVLNLKELEKHAGRAGIVTNTVKDVNAELVNDGIVDSDKIGASNFFWAFPSKAVLTHVNNIASLKEQIETTHASLEDAKRKGEELGGARVDPSLGXXXXXXXXDCDERRAKLQRLAEEREREAALRADAEQLKXXXXXXXXXXXXQLRERXXXXXXXXXXXXXNDPKELERVRAEVEGARERANLWTDNLWAIKAFMVKKQGLTGKEVDRMLGLKEDFDYV 244
[Close]
BLAST of jgi.p|Trimin1|350811 vs. uniprot
Match: F5BX17_UNDPI (Meiotic nuclear division protein 1 n=1 Tax=Undaria pinnatifida TaxID=74381 RepID=F5BX17_UNDPI)

HSP 1 Score: 167 bits (423), Expect = 1.710e-46
Identity = 98/244 (40.16%), Postives = 139/244 (56.97%), Query Frame = 1 
Query:    1 MVRKALSVDEKKERLLSIFHTTKEVLNLKELEKHAGRAGIVTNTVKDVNAELVNDGIVDSDKIGASNFFWAFPSKAVLTHVNNIASLKEQIETTHASLEDAKRKGEELGGARVDPSLGXXXXXXXXDCDERRAKLQRLAEEREREAALRADAEQLKXXXXXXXXXXXXQLRERXXXXXXXXXXXXXNDPKELERVRAEVEGARERANLWTDNLWAIKAFMVKKQGLTGKEVDRMLGLKEDFDYV 732
            MV+K LS++EK+ ++L+I+H TK + +LKE+EK A + G+V+ T+KDVN  LV+DG+VD DKIG SNFFW+FPSKAV+   N I SLK  I     +    KRK   L   R              D +ER+ KL+RL + ++R   L ++ E LK                              NDP ELE+V    E  ++  N WTDN W+IK++MVK +G++G +VD+ L +K DFD+V
Sbjct:    1 MVKKGLSLEEKRAKILNIYHGTKSIFSLKEIEKAASKQGVVSQTIKDVNQSLVDDGLVDMDKIGPSNFFWSFPSKAVVDRQNLIDSLKRDIAKAEDTAAVNKRKIASLVEERA-------------DTEERQLKLRRLQDNKQRVKQLESEYETLKE-----------------------------NDPAELEKVTNVAEVCKDGVNRWTDNTWSIKSWMVKTRGMSGADVDKYLQIKADFDHV 202
[Close]
BLAST of jgi.p|Trimin1|350811 vs. uniprot
Match: D8LRU4_ECTSI (MND1 family n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRU4_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 9.390e-46
Identity = 99/244 (40.57%), Postives = 135/244 (55.33%), Query Frame = 1 
Query:    1 MVRKALSVDEKKERLLSIFHTTKEVLNLKELEKHAGRAGIVTNTVKDVNAELVNDGIVDSDKIGASNFFWAFPSKAVLTHVNNIASLKEQIETTHASLEDAKRKGEELGGARVDPSLGXXXXXXXXDCDERRAKLQRLAEEREREAALRADAEQLKXXXXXXXXXXXXQLRERXXXXXXXXXXXXXNDPKELERVRAEVEGARERANLWTDNLWAIKAFMVKKQGLTGKEVDRMLGLKEDFDYV 732
            MV++ LSV+EK++++L I+H+TK + +LKE+EK A + G+  NTVKDVN  LV+DG+VD DKIGASNFFW+FPSK  +T  N + +L++ I     +    KRK  EL   R D +              RR KL RL E   R   L  + E LK                              NDP ELE+V    +  ++  N WTDN W IK++MVK +G++GK+VDR L +K DFD V
Sbjct:    1 MVKRGLSVEEKRDKVLDIYHSTKAIYSLKEIEKAASKQGVTINTVKDVNQSLVDDGLVDMDKIGASNFFWSFPSKVAVTKQNVVDNLEQSIAKAEDNTAANKRKFSELEEGRADTAS-------------RREKLGRLQENGLRLQELEKEYESLKE-----------------------------NDPAELEKVARLTQVCKDGVNRWTDNSWCIKSWMVKTKGMSGKDVDRYLQIKGDFDLV 202
[Close]
BLAST of jgi.p|Trimin1|350811 vs. uniprot
Match: A0A7S2XYC3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYC3_9STRA)

HSP 1 Score: 161 bits (407), Expect = 4.500e-44
Identity = 94/242 (38.84%), Postives = 139/242 (57.44%), Query Frame = 1 
Query:    7 RKALSVDEKKERLLSIFHTTKEVLNLKELEKHAGRAGIVTNTVKDVNAELVNDGIVDSDKIGASNFFWAFPSKAVLTHVNNIASLKEQIETTHASLEDAKRKGEELGGARVDPSLGXXXXXXXXDCDERRAKLQRLAEEREREAALRADAEQLKXXXXXXXXXXXXQLRERXXXXXXXXXXXXXNDPKELERVRAEVEGARERANLWTDNLWAIKAFMVKKQGLTGKEVDRMLGLKEDFDYV 732
            RK LS++EK++R+L I+H++ EV NLKE+EK A +AG+V  T+KDVN  L++D +VD+DKIG++NFFW+FPSK  +     I SL++QIE +   L  A+ K  +L  A               D + RR  L +L +ER+R + L    + LK                              NDP+EL R++   E  +E  N WTDN+WA+K++ VKK+G+  K+VDR + L +DFDY+
Sbjct:    5 RKGLSLEEKRQRILGIYHSSGEVYNLKEIEKIASKAGVVLQTIKDVNQSLIDDHLVDADKIGSANFFWSFPSKVYVVKKTKIESLQKQIEDSKRQLNAAQDKVADLENA------------GRQDSNTRREGLAKLDQERKRGSELDERLQCLKE-----------------------------NDPEELLRLKNLQEEIKEHVNRWTDNIWAVKSWCVKKKGMPSKDVDRYMQLPQDFDYI 205
[Close]
BLAST of jgi.p|Trimin1|350811 vs. uniprot
Match: H3HEE5_PHYRM (Uncharacterized protein n=24 Tax=Phytophthora TaxID=4783 RepID=H3HEE5_PHYRM)

HSP 1 Score: 160 bits (405), Expect = 8.120e-44
Identity = 93/244 (38.11%), Postives = 140/244 (57.38%), Query Frame = 1 
Query:    1 MVRKALSVDEKKERLLSIFHTTKEVLNLKELEKHAGRAGIVTNTVKDVNAELVNDGIVDSDKIGASNFFWAFPSKAVLTHVNNIASLKEQIETTHASLEDAKRKGEELGGARVDPSLGXXXXXXXXDCDERRAKLQRLAEEREREAALRADAEQLKXXXXXXXXXXXXQLRERXXXXXXXXXXXXXNDPKELERVRAEVEGARERANLWTDNLWAIKAFMVKKQGLTGKEVDRMLGLKEDFDYV 732
            M RK +S+ EK+ER+L I+H +KEV NLKE+EK   +AG+V  TVKDVN  LV+D +VD DKIG+ N+FW+FPSK   T    ++ L+++ +T    L   K+  E+  G R              + +ER  KL+RL E++ +   LR   + L                               NDP+ LE++  +V  A+E ++ WTDN++ +K+++VKK+G+ GKEVD+ LG+K+DFDYV
Sbjct:    1 MPRKGVSLQEKRERILRIYHESKEVFNLKEVEKLGSKAGVVLQTVKDVNQALVDDVLVDCDKIGSGNYFWSFPSKLSQTRRRKLSELEQRHQTAQDKLVKVKQNVEKQKGLRP-------------ESEERVQKLRRLEEQKAKVQVLRTKVQHL-----------------------------AENDPEILEQLERKVRMAKEGSDRWTDNVYTLKSWVVKKRGVEGKEVDKWLGIKDDFDYV 202
[Close]
BLAST of jgi.p|Trimin1|350811 vs. uniprot
Match: A0A7S3XLC7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XLC7_HETAK)

HSP 1 Score: 151 bits (382), Expect = 9.270e-41
Identity = 94/242 (38.84%), Postives = 127/242 (52.48%), Query Frame = 1 
Query:    7 RKALSVDEKKERLLSIFHTTKEVLNLKELEKHAGRAGIVTNTVKDVNAELVNDGIVDSDKIGASNFFWAFPSKAVLTHVNNIASLKEQIETTHASLEDAKRKGEELGGARVDPSLGXXXXXXXXDCDERRAKLQRLAEEREREAALRADAEQLKXXXXXXXXXXXXQLRERXXXXXXXXXXXXXNDPKELERVRAEVEGARERANLWTDNLWAIKAFMVKKQGLTGKEVDRMLGLKEDFDYV 732
            RK +S +EK+ R+L I+H  KEVLNLKELEK   + G+V  ++K+VN  LV+D +VD+DKIG++NFFW+FPSK        +A L                    LG  R              D  +RRA+LQ+L +E+ REAAL    + LK                              NDP+EL R+  E E  +E AN WTDN+WA+K++ +KK+G+   EVDR L L  DFDYV
Sbjct:    5 RKGVSYEEKRTRILGIYHEKKEVLNLKELEKLGVKQGVVVQSIKEVNQALVDDNLVDTDKIGSANFFWSFPSK--------VAEL--------------------LGAGR-------------HDTPQRRAQLQKLQDEKAREAALDQRLDTLKE-----------------------------NDPRELARIETETEKCKEAANRWTDNIWALKSWCIKKKGMASTEVDRYLQLSSDFDYV 176
[Close]
BLAST of jgi.p|Trimin1|350811 vs. uniprot
Match: A0A0W8B6R8_PHYNI (Dephospho-CoA kinase domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A0W8B6R8_PHYNI)

HSP 1 Score: 160 bits (404), Expect = 1.070e-40
Identity = 95/253 (37.55%), Postives = 140/253 (55.34%), Query Frame = 1 
Query:    1 MVRKALSVDEKKERLLSIFHTTKEVLNLKELEKHAGRAGIVTNTVKDVNAELVNDGIVDSDKIGASNFFWAFPSKAVLTHVNNIASLKEQIETTHASLEDAKRKGEELGGARVDPSL---------GXXXXXXXXDCDERRAKLQRLAEEREREAALRADAEQLKXXXXXXXXXXXXQLRERXXXXXXXXXXXXXNDPKELERVRAEVEGARERANLWTDNLWAIKAFMVKKQGLTGKEVDRMLGLKEDFDYV 732
            M RK +S+ EK+ER+L I+H +KEV NLKE+EK   +AG+V  TVKDVN  LV+D +VD DKIG+ N+FW+FPSK   +    ++ L+++  T   +L   ++  EE    R D            G        + DER  KL+RL E++ +  ALR   + L                               NDP  LE +  +V  A+E ++ WTDN++ +K+++VKK+G+ GKEVD+ LG+K+DFDYV
Sbjct:  272 MPRKGVSLQEKRERILRIYHESKEVFNLKEVEKLGSKAGVVLQTVKDVNQALVDDALVDCDKIGSGNYFWSFPSKLSQSRKRKLSELEQRRHTAQENLAKVQQNIEEQKSLRSDSVRTNISRGNFGGVLMEWIICEQDERVQKLRRLEEQKAKVNALRTKVQHL-----------------------------AENDPAILEELERKVRMAKEGSDRWTDNVYTLKSWVVKKRGVEGKEVDKWLGIKDDFDYV 495
[Close]
BLAST of jgi.p|Trimin1|350811 vs. uniprot
Match: A0A0P1AFA8_PLAHL (Protein involved in meiotic recombination/predicted coiled-coil protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AFA8_PLAHL)

HSP 1 Score: 150 bits (378), Expect = 7.800e-40
Identity = 92/244 (37.70%), Postives = 135/244 (55.33%), Query Frame = 1 
Query:    1 MVRKALSVDEKKERLLSIFHTTKEVLNLKELEKHAGRAGIVTNTVKDVNAELVNDGIVDSDKIGASNFFWAFPSKAVLTHVNNIASLKEQIETTHASLEDAKRKGEELGGARVDPSLGXXXXXXXXDCDERRAKLQRLAEEREREAALRADAEQLKXXXXXXXXXXXXQLRERXXXXXXXXXXXXXNDPKELERVRAEVEGARERANLWTDNLWAIKAFMVKKQGLTGKEVDRMLGLKEDFDYV 732
            M RK +S+ EK+ER+L I+H +KEV NLKE+EK   +AG+V  TVKDVN  LV+D +VD DKIG+ N+FW+FPSK   +    ++ L++  +     L+  K K EE    R              D DER  KL+RL E + +  +LR   + L                               NDP  LE +  +V  A+E A+ WTDN++ +K+++VKK+G+ GKEV++ L +++DFDYV
Sbjct:    1 MPRKGVSLQEKRERILRIYHESKEVFNLKEVEKLGSKAGVVLQTVKDVNQALVDDALVDCDKIGSGNYFWSFPSKLSQSRKRKLSELEQCRQARQEKLDRVKEKIEEQQALRS-------------DSDERIQKLKRLEELKVKVESLRNTMQHL-----------------------------AENDPAILEDLECKVGIAKEGADRWTDNVFTLKSWVVKKRGVEGKEVNKWLEIQDDFDYV 202
[Close]
BLAST of jgi.p|Trimin1|350811 vs. uniprot
Match: A0A8K1FKH2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FKH2_PYTOL)

HSP 1 Score: 145 bits (366), Expect = 4.790e-38
Identity = 82/242 (33.88%), Postives = 135/242 (55.79%), Query Frame = 1 
Query:    7 RKALSVDEKKERLLSIFHTTKEVLNLKELEKHAGRAGIVTNTVKDVNAELVNDGIVDSDKIGASNFFWAFPSKAVLTHVNNIASLKEQIETTHASLEDAKRKGEELGGARVDPSLGXXXXXXXXDCDERRAKLQRLAEEREREAALRADAEQLKXXXXXXXXXXXXQLRERXXXXXXXXXXXXXNDPKELERVRAEVEGARERANLWTDNLWAIKAFMVKKQGLTGKEVDRMLGLKEDFDYV 732
            +K +S++EK+ER+L I+H +K+V N+KE+EK   +AG+V  T+KDVN  LV+D +VD DKIG+ N+FW+FPSK        ++ L+++ ++T   L   K++ E+    R              D D+R AKLQRLAE +     ++A  + L                               NDP  LE +   ++ A+  A+ WTDN++ +++++ +K+G +  EVD+ LG+K+DFDY+
Sbjct:    5 KKGVSLEEKRERILKIYHESKDVYNIKEIEKLGAKAGVVLQTIKDVNQALVDDALVDFDKIGSGNYFWSFPSKVSQQRKRKLSELEQRKQSTSEQLSKVKQEVEKQKSLRT-------------DSDDRVAKLQRLAELQTHVKDMKAKIQHL-----------------------------ADNDPAILEHLERNMQVAKVGADRWTDNVYTVRSWVAQKRGCSTGEVDKWLGIKDDFDYI 204
[Close]
BLAST of jgi.p|Trimin1|350811 vs. uniprot
Match: A0A5D6Y0R0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y0R0_9STRA)

HSP 1 Score: 141 bits (355), Expect = 1.910e-36
Identity = 83/242 (34.30%), Postives = 130/242 (53.72%), Query Frame = 1 
Query:    7 RKALSVDEKKERLLSIFHTTKEVLNLKELEKHAGRAGIVTNTVKDVNAELVNDGIVDSDKIGASNFFWAFPSKAVLTHVNNIASLKEQIETTHASLEDAKRKGEELGGARVDPSLGXXXXXXXXDCDERRAKLQRLAEEREREAALRADAEQLKXXXXXXXXXXXXQLRERXXXXXXXXXXXXXNDPKELERVRAEVEGARERANLWTDNLWAIKAFMVKKQGLTGKEVDRMLGLKEDFDYV 732
            RK +S++EK+ R+L I+H +K+V NLKE+EK   +AG+V  T+KDVN  LV+DG+VD DKIG+ N+FW+FPSK        +  L+++       L   ++  +E    R              + D+R AKLQRLAE       L+A  + LK                              NDP+ L ++   V+ A+  A+ WTDN++ +++++ +K+G    EVD+ LG+K+DFDY+
Sbjct:    4 RKGVSLEEKRARILHIYHDSKDVFNLKEVEKIGAKAGVVLQTIKDVNQALVDDGLVDCDKIGSGNYFWSFPSKLSQARKRKLGELEQRKAAAQDKLAKVRQSIDEQKSKRT-------------ESDDRAAKLQRLAE-------LQASVKDLKAKVQHLAD----------------------NDPEILAQLERSVQVAKIGADRWTDNVFTMRSWVAQKRGCASSEVDKWLGIKDDFDYI 203
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350811 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YU23_9STRA1.510e-134100.00Meiotic nuclear division protein 1 n=1 Tax=Tribone... [more]
F5BX17_UNDPI1.710e-4640.16Meiotic nuclear division protein 1 n=1 Tax=Undaria... [more]
D8LRU4_ECTSI9.390e-4640.57MND1 family n=2 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
A0A7S2XYC3_9STRA4.500e-4438.84Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
H3HEE5_PHYRM8.120e-4438.11Uncharacterized protein n=24 Tax=Phytophthora TaxI... [more]
A0A7S3XLC7_HETAK9.270e-4138.84Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0W8B6R8_PHYNI1.070e-4037.55Dephospho-CoA kinase domain-containing protein n=2... [more]
A0A0P1AFA8_PLAHL7.800e-4037.70Protein involved in meiotic recombination/predicte... [more]
A0A8K1FKH2_PYTOL4.790e-3833.88Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6Y0R0_9STRA1.910e-3634.30Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_73contigContig_73:197462..202972 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|350811|estExt_Genemark1.C_Ctg_730024
BRITEko00000,ko01000,ko04121
KEGG koko:K11997,ko:K22381
EC2.3.2.27
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0007275,GO:0008150,GO:0008152,GO:0009314,GO:0009553,GO:0009555,GO:0009628,GO:0009987,GO:0010212,GO:0016043,GO:0022402,GO:0022414,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033554,GO:0034641,GO:0035825,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0048229,GO:0048285,GO:0048856,GO:0050896,GO:0051321,GO:0051716,GO:0061982,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0140013,GO:1901360,GO:1901363,GO:1903046
Preferred nameMND1
Descriptionhomologous recombination
COG categoryD
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5124@1|root,KOG3433@2759|Eukaryota
Evalue2.08e-48
Seed ortholog2880.D8LRU4
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMND1 family
Ec32 orthologEc-08_002470.1
TranscriptId351133
TrackFilteredModels1
ProteinId350811
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350811gene_12854Tribonema minus UTEX_B_3156 geneContig_73 197462..202972 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350811Trimin1|350811|estExt_Genemark1.C_Ctg_730024Tribonema minus UTEX_B_3156 polypeptideContig_73 197915..202972 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12854_11exon_12854_11Tribonema minus UTEX_B_3156 exonContig_73 197462..197959 -
exon_12854_10exon_12854_10Tribonema minus UTEX_B_3156 exonContig_73 198999..199058 -
exon_12854_9exon_12854_9Tribonema minus UTEX_B_3156 exonContig_73 199918..199992 -
exon_12854_8exon_12854_8Tribonema minus UTEX_B_3156 exonContig_73 200565..200609 -
exon_12854_7exon_12854_7Tribonema minus UTEX_B_3156 exonContig_73 200708..200749 -
exon_12854_6exon_12854_6Tribonema minus UTEX_B_3156 exonContig_73 200855..200971 -
exon_12854_5exon_12854_5Tribonema minus UTEX_B_3156 exonContig_73 201106..201144 -
exon_12854_4exon_12854_4Tribonema minus UTEX_B_3156 exonContig_73 201723..201758 -
exon_12854_3exon_12854_3Tribonema minus UTEX_B_3156 exonContig_73 202215..202352 -
exon_12854_2exon_12854_2Tribonema minus UTEX_B_3156 exonContig_73 202737..202823 -
exon_12854_1exon_12854_1Tribonema minus UTEX_B_3156 exonContig_73 202922..202972 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_12854UTR3_12854Tribonema minus UTEX_B_3156 three_prime_UTRContig_73 197462..197914 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12854CDS_12854Tribonema minus UTEX_B_3156 CDSContig_73 202922..202972 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12854 ID=mRNA_12854|Name=jgi.p|Trimin1|350811|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1188bp|location=Sequence derived from alignment at Contig_73:197462..202972- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCAGGAAAGCTCTTTCAGTGGACGAGAAGAAGGAGAGGCTTCTGTC
GATCTTTCACACCACCAAAGAAGTGCTCAACCTGAAAGAGCTCGAGAAGC
ATGCCGGCAGGGCTGGCATTGTGACCAACACAGTCAAGGATGTGAACGCG
GAGCTGGTGAATGACGGTATCGTGGACAGCGACAAAATCGGCGCATCGAA
CTTCTTCTGGGCCTTTCCCAGCAAGGCGGTGCTGACGCACGTCAACAACA
TTGCATCGCTCAAGGAGCAGATTGAGACGACGCATGCATCTCTGGAGGAC
GCCAAGCGCAAGGGCGAGGAGCTGGGCGGCGCGCGCGTCGACCCGTCTCT
TGGCGAGGAGCTGCGCGGCACGCGCGTGGACTGCGACGAGCGGCGCGCCA
AGCTGCAGCGCCTGGCGGAGGAGAGGGAGAGGGAGGCAGCGCTCAGAGCG
GACGCAGAGCAGCTCAAGAGGGAGAGCGAGGCAGCGCTCAGAGCAGACGC
AGAGCAGCTCAGGGAGAGGGAGGCAGCGCTCAGAGCGGATGTGGAGCAGC
TCAAGGAAAACGATCCCAAGGAACTGGAAAGAGTGAGGGCAGAAGTGGAG
GGAGCGCGGGAACGGGCCAACCTCTGGACGGACAACCTGTGGGCAATCAA
GGCATTCATGGTCAAGAAGCAGGGGCTGACCGGCAAGGAGGTGGATCGGA
TGCTGGGCCTGAAGGAGGACTTCGACTACGTGTGAAGGCGCTGCACGCGT
GTTTTGCGCAACAGCTTGGATTGCAGGACAGGCCAACCATTGCGCAAACA
AGCCCCTCACCACAAGCTCACAAGTTTCAACAGCGGCCCTTACAGGGCTT
GCACCGCGGCCTGCATGGTGGGACGCCTCTGCCAGATCAATCAAGCAGCT
GCATCACTGGTGATCTGCGGGGTGTGCAAGCCAGTGCACGCTCAAGCGCC
TCGGGAGTGTGATCAGCCGCAGCAGTCGCAGCACCACCGCCAGCAGCAGC
AGCAGCAGCAGCTGCAGGCGCAAAAACCGCACAGCCCCAGCAGCGTCAGA
GGCCACGTCCGACGTCACGACACTGACCTCAGACATGGCGCCGAACCGTG
ACCTTGCAACAGGGTGGGCAAGGCAACAGGATGAGCGCTGGCGCAAGGCA
CAATGCACTTTACTTGATTGTTGCAGTGTAGATGAGCA
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protein sequence of jgi.p|Trimin1|350811

>Trimin1|350811|estExt_Genemark1.C_Ctg_730024 ID=Trimin1|350811|estExt_Genemark1.C_Ctg_730024|Name=jgi.p|Trimin1|350811|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=245bp
MVRKALSVDEKKERLLSIFHTTKEVLNLKELEKHAGRAGIVTNTVKDVNA
ELVNDGIVDSDKIGASNFFWAFPSKAVLTHVNNIASLKEQIETTHASLED
AKRKGEELGGARVDPSLGEELRGTRVDCDERRAKLQRLAEEREREAALRA
DAEQLKRESEAALRADAEQLREREAALRADVEQLKENDPKELERVRAEVE
GARERANLWTDNLWAIKAFMVKKQGLTGKEVDRMLGLKEDFDYV*
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mRNA from alignment at Contig_73:197462..202972-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12854 ID=mRNA_12854|Name=jgi.p|Trimin1|350811|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5511bp|location=Sequence derived from alignment at Contig_73:197462..202972- (Tribonema minus UTEX_B_3156 )
ATGGTCAGGAAAGCTCTTTCAGTGGACGAGAAGAAGGAGAGGCTTCTGTC
GGTACGTACACAACTGGCAGTTGAGCCCGCGATGACAATGATGACATGCT
AGGCGCTGATCAACGTTGCGAATGCTGCGCTGTTGATTGTGCGCTGCAGA
TCTTTCACACCACCAAAGAAGTGCTCAACCTGAAAGAGCTCGAGAAGCAT
GCCGGCAGGGCTGGCATTGTGACCAACACAGTCAAGGTGAGCCAATCGCA
CCCTTGCCACAGACAGCAGGACTGCCCTTGTACTTTGAAGCACAGCACTG
CTGATTGTCAATGCGAGTTTGATCCTACGTCAGGTCTTGCAAGTTTGCTG
GCTCGTCCACACCGCGCGTACTAGAAAAAGCGGCTGACACCGACGCACCA
GAAGAAAACATCAACAACTACATCGCTCCTTCGCTTTACATCAACACACC
CCATGGTCACCTAGTGACATGCCCTGAACTCACATTCGCGCTGCTGGCAC
CTGCATGATCTCTAACGTCATTCATACTCGCTGCTGCACCGATGCAGCTA
TTGCAGAATGTGAACGCTCATTTCACTTCTGCTACATAATTGCTGCTGAC
AAATGTGACTGCGACTGTAGGATGTGAACGCGGAGCTGGTGAATGACGGT
ATCGTGGACAGCGACAAAATCGGCGCATCGAACTTCTTCTGGGCCTTTCC
CAGCAAGGCGGTGCTGACGCACGTCAACAACATTGCATCGCTCAAGGAGC
AGATTGAGGTAACTAGCGCCCGCTTTTTTGTAATACAACGACGGCCACCA
CGTTTGTTGAATGAGCAGTCTGGTAGCAACTGGGTGTGCTGCAGTGACTT
GCTCCCTCACAGCAACCTGTGCTGCGCGCCTGAGTGCGGCAACCTGCGAT
AGCGTGTCTGCGTGCCTGTGCTGCGCCACAATGCGTGCATCACGCCGGGA
TAATACGGAGGGAGCCTGGTCAGCACTGCTAGTAGGGTGTGAGTGTGAAA
GTAGAGGCTCTCAGCAGATCATGAGCAGGCTCATGCGGCTGCAGCCCAAG
CATCGGCGCTGCTGCTCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCGCTG
CTGCTGCCGCGGCTGCCGCTGGCTCCTGCCATCAACGCTATCGCTTGCCC
CGCTCATTCCTCCTGCTGCTGCCTTCTGCTGCTGCTGCTGCTGCTGCTGT
TGTGTGGTGCGCAGACGACGCATGCATCTCTGGAGGACGCCAAGCGCAAG
GTGCGCCGGTCACACTAATGTTTGTGCGTCTTGTGCGCCTTCACTTGTTC
ACCTTGTTGACGCGAATGTTTGCATCGAGCGCAGGTGGCTTTTCACACGC
ATGCCCTGTGTTTTGCCCGGACACACACCCTCTTGTCAAGGTTCGCACCG
CCAGACGCGCTGAGAACTGCAGTTAGCTCTGCACACGCCGCACACAGTCC
TTCACAACAATGGCTGCGCCGCCGCTTGGCCCTTCGTGTCTCCTGTCAGG
GGCACTGCAGCCCCCCTCTGCACTGGAGTCTTCGTCTTGACAGCAAGGCG
CCACTCCTTGTACCCTTGATCTCGCTATCCGCGGTCATCATCACCATCAC
CCACTGCGAACATGCTGCTGCTGATCATCATCATCACCCACTGCGAAAAG
TGGCGATCGGAGGTCATCATCATCATCAACCCACTGCAAAAATGCTGCTG
CTGATCATCATCATCGCCCAGTGCGAAACTGCTGCTGATCATCATCATCA
TCACCCAGTGCGAAAATGCTGCTGCTGATCATCACCATCACGCACTGCGC
AAACGCCGCTGCTGAGCGCTGCCGCCAGGGCGAGGAGCTGGGCGGCGCGC
GCGTCGACCCGTCTCTTGTAAGCACATTGCAGATGTGTATAACATCATTC
GATTTTAACAGCAAGTGCGCCACTCCTTGTATGCTGGCCCCTGTCGCTGT
CATCACCATTCATCACCCTGCGCAAACGCTGCTGCTGAGTGCTGCCGCCA
GGGCGAGGAGCTGCGCGGCACGCGCGTGGACTGCGACGAGCGGCGCGCCA
AGCTGCAGCGCCTGGCGGAGGAGAGGGAGAGGGAGGCAGCGCTCAGAGCG
GACGCAGAGCAGCTCAAGGTGGGCATACCTTCCAGTATGACTCTATATAG
TGTATACTTCTGTATACAATACCATGTGGTGTGGTGGCGTATAGTGATGC
TGTGTGTGGCGGTTCACGCCGAGAGGGAGAGCGAGGCAGCGCTCAGAGCA
GACGCAGAGCAGCTCGTGGGCAACCAATCCAGTTTGGAGTGTATACTTGT
ATGTATGTACACATGTAGTGTGGTTGGCGTGTAGTGATGCTGTGTGTGGC
GGTTCACGCCGAGAGGGAGAGGGAGGCAGCGCTCAGAGCGGATGTGGAGC
AGCTCAAGGTGGGCAGCATGGGCGGCAAATAGCAATGCTGTGTGTAGGGA
TGTACACATACCTTTTGCGTGGTGCGCTTGTGCCGTCACGAGCGGATGCG
CAGCAGCTCAAGTGGGGCAGCGCTTCCAGTATGGCGGCAGAAAGTAATGC
TGGTCACAAGGGTGTACACAAAGCTTTTGGGTGGTGCTTGTGCCGTCATC
ACGGCCTCGCTGCAGCAGCTCTGACTTGAAAGGAAGTGCGCTTGCGCTGC
GCAACCGTAACAGCAGCCGCACTGGCAGGGGGAGCTCGAGGCGCGCCAGC
CCTGCAGCCATCATCGCTGCCATCGGCACAAGCGGTCTCATATTGACACT
GCCTGTGCAGACGTGATGCAACAGAACCGGACGTCGTTGACACGTCCTCA
TGTCCGCCATCTCGTTGATCATGATGCACATTGGTGCTGGTCTTTCCCAT
TGGTACTGATTTTTGGAGCTGGGTGGTGAGTCATCTGGTGCTGAGCAATG
ATGCACCACACCAGAATTCCCAACAAACACTGCTGCATCAAACCTGATTG
GAAGTGTTATGCCGATATTGACATATGCAGGAAAACGATCCCAAGGAACT
GGAAAGAGTGAGGGCAGAAGTGGAGGGAGCGCGGGAACGGGCCAACCTCT
GGACGGTGGGTTTAGCCAGCAGCTGTGTGCCGTGTGCTCTGATGAATGCA
CAACGCACTTGATGCATGCTCTAACAACGCACCTCATGAAGCATGAATGC
GCCGAAGCCCCATCCCTATGCAGGGCAAGTAGGTACCAGAACTGTCTCGC
ACAATTGCATGAGCAACTCACTGTGTCTTACAGTCATGCGAGCGCATTGA
ACGATCGAGGGTGAACACCTTTCGGCAGCGGTCGGTTAGGGTTAGGGTTG
GTTTAGGGTTTGGGAAGGAGCGGCTTTGCACAGAGGTATGCGTTCTGACT
GCATCTCGCACAGTCATCGTCTTCACATTCATTTGCGGCTGCTGTGCTAT
TGCCAATGCCTCAGAACTGGCCCATTCTGTCCGCCGCTGTGGAATAGCCC
ACATGTCTTCACGCACGCGTGCCGCGTGTGTACGGTTGCGCACCCGCGTT
TGCGGCGCCAAGCGCCAGTGGCTCCACCGAATATGTTGCGTGCTGTGCCA
GCATCATCTGCAGCAGAGGCGGCAGCAGCAGCAGCGCTCAACACGTTTGC
CCCCTTGGCTGCCATCCACCCCCCAAACCGCGCAGCTGCTCCCACCTGCA
AGACTTCGCTCCAGTGCCGATTCTAATTCAGTTTGTTTGGGTGACAGAAG
AAAAATTCGCATGAGTCAGGGCGATGCCCTGCTGAACACTGCAACATTTT
GTGAAGATGCATTAGAGATTGACGTCATGACTGCACGCGCGCGTACAGCC
ATGCGCAACTGCCGCTGTGCGCAGAGCGCAACGCACGATGGCGCGCAGCA
AGTGCGCTTTTACTCAGCATGCAACACTTGCACCTCAACGCCCGCTGCTT
GTGCTTCATGACAGGACAACCTGTGGGCAATCAAGGCATTCATGGTCAAG
AAGCAGGGGCTGACCGGCAAGGAGGTACGTCCACATGGTGTATCATAGGA
AGCAAGTCGGAAGCAGAAAGATTTACACGAATTGTAGGTGTTTGGGGCCA
AAATGCAACTGATTATCCTTGACACTTCGGCGTGATTGACTTTAGGCGTG
AAGTTCAAGTCATGCAGCCCCTCGGAGGCTGACAGTGCGAATGCAGGCGT
ATGAGATGTGAATTTGTGCACCCATGTACTTCAACTATTTTCTGTAGGTA
CACCATGACGTCTAAGTGCATGTGGCATGTAAACTTGTGGAAACGTTTCC
ACGACTTTAGCACGATGCGGTATTGTGAAGATCAGATGGGATGCAACTGC
AGCACACGCAGTGCGCTCAGCCTGTGCTACCTACTTCAACCTGCTCTACT
CACACGGGGCAGATGTGCATGCAGGCACGAGGAAATGCATGCTGTGCTTA
GAATTTAAGCGCAGGTGCGCAGGTTCAGGGTAGCTGATGATGACACCTCA
CAGCGCCGTCGCGAGGTGTGCTTCGCCAGAACAGCATTGCTCACAGCGCA
AACAGTGGTACTTCCGATTCCAAATCACTCTTGATGTCGAAGCAGTTGCT
CATGACATGGGCGGCCTTGTCTTCTGAGTGCCTAGCGCCAAACCTGCGAG
GCACTGCCCTTGGCTGCCCCCTGCAGCCATGCCGTGGCATCCTGCCCTGT
TCTGCAGCGCGCACATTGCCGATGCTGTACAATGCACGAGTTTGCGATGA
CGTCATGGTGCCGTGTGATGGCCATCAGAGGCGTGCCCTTGGCGCCCCCT
GCCCGAAGGGGCGCAAGTGGCGGGGCGCAATTTCTTGCGGCGCTGCGGCA
AGTTCAACTACAGCTCTTGTGCACAAGGTAATCGTTCGTTCATGAACACT
CTTTACAGGGTTTATGGGACGCTCCTGCATTCAAACATTTGTGGGCGCCG
TTGCGCACGCCCGCGGCACATACAAGCAAGGCTACTGGCGGTGCGCCGCT
GTCTACAGCACACTTGACATGTATCAACGCACAATGCTCATTTCTGCGTC
CTGCTACCTGCAGGTGGATCGGATGCTGGGCCTGAAGGAGGACTTCGACT
ACGTGTGAAGGCGCTGCACGCGTGTTTTGCGCAACAGCTTGGATTGCAGG
ACAGGCCAACCATTGCGCAAACAAGCCCCTCACCACAAGCTCACAAGTTT
CAACAGCGGCCCTTACAGGGCTTGCACCGCGGCCTGCATGGTGGGACGCC
TCTGCCAGATCAATCAAGCAGCTGCATCACTGGTGATCTGCGGGGTGTGC
AAGCCAGTGCACGCTCAAGCGCCTCGGGAGTGTGATCAGCCGCAGCAGTC
GCAGCACCACCGCCAGCAGCAGCAGCAGCAGCAGCTGCAGGCGCAAAAAC
CGCACAGCCCCAGCAGCGTCAGAGGCCACGTCCGACGTCACGACACTGAC
CTCAGACATGGCGCCGAACCGTGACCTTGCAACAGGGTGGGCAAGGCAAC
AGGATGAGCGCTGGCGCAAGGCACAATGCACTTTACTTGATTGTTGCAGT
GTAGATGAGCA
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Coding sequence (CDS) from alignment at Contig_73:197462..202972-

>mRNA_12854 ID=mRNA_12854|Name=jgi.p|Trimin1|350811|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=735bp|location=Sequence derived from alignment at Contig_73:197462..202972- (Tribonema minus UTEX_B_3156 )
ATGGTCAGGAAAGCTCTTTCAGTGGACGAGAAGAAGGAGAGGCTTCTGTC
GATCTTTCACACCACCAAAGAAGTGCTCAACCTGAAAGAGCTCGAGAAGC
ATGCCGGCAGGGCTGGCATTGTGACCAACACAGTCAAGGATGTGAACGCG
GAGCTGGTGAATGACGGTATCGTGGACAGCGACAAAATCGGCGCATCGAA
CTTCTTCTGGGCCTTTCCCAGCAAGGCGGTGCTGACGCACGTCAACAACA
TTGCATCGCTCAAGGAGCAGATTGAGACGACGCATGCATCTCTGGAGGAC
GCCAAGCGCAAGGGCGAGGAGCTGGGCGGCGCGCGCGTCGACCCGTCTCT
TGGCGAGGAGCTGCGCGGCACGCGCGTGGACTGCGACGAGCGGCGCGCCA
AGCTGCAGCGCCTGGCGGAGGAGAGGGAGAGGGAGGCAGCGCTCAGAGCG
GACGCAGAGCAGCTCAAGAGGGAGAGCGAGGCAGCGCTCAGAGCAGACGC
AGAGCAGCTCAGGGAGAGGGAGGCAGCGCTCAGAGCGGATGTGGAGCAGC
TCAAGGAAAACGATCCCAAGGAACTGGAAAGAGTGAGGGCAGAAGTGGAG
GGAGCGCGGGAACGGGCCAACCTCTGGACGGACAACCTGTGGGCAATCAA
GGCATTCATGGTCAAGAAGCAGGGGCTGACCGGCAAGGAGGTGGATCGGA
TGCTGGGCCTGAAGGAGGACTTCGACTACGTGTGA
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