mRNA_12849 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|131823
Unique NamemRNA_12849
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|131823 vs. uniprot
Match: A0A835YL14_9STRA (Structural maintenance of chromosomes protein 5 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL14_9STRA)

HSP 1 Score: 306 bits (784), Expect = 1.330e-105
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1 
Query:    1 FHTGAITRVAMHNFLTYADVNFKPGPKLNIVMGPNGAGKSSIVCAMVLGLAGNPKFLGRSENLNDFIMHEQQHAWVEVELEVHEVGKRVVFRRSFERNVKGSKWQLDGRTHPEKHVKEKIAALGIQVDNLCTFLPQDRVGDFSGYNPQ 444
            FHTGAITRVAMHNFLTYADVNFKPGPKLNIVMGPNGAGKSSIVCAMVLGLAGNPKFLGRSENLNDFIMHEQQHAWVEVELEVHEVGKRVVFRRSFERNVKGSKWQLDGRTHPEKHVKEKIAALGIQVDNLCTFLPQDRVGDFSGYNPQ
Sbjct:    1 FHTGAITRVAMHNFLTYADVNFKPGPKLNIVMGPNGAGKSSIVCAMVLGLAGNPKFLGRSENLNDFIMHEQQHAWVEVELEVHEVGKRVVFRRSFERNVKGSKWQLDGRTHPEKHVKEKIAALGIQVDNLCTFLPQDRVGDFSGYNPQ 148
[Close]
BLAST of jgi.p|Trimin1|131823 vs. uniprot
Match: A0A2D4CGT3_PYTIN (Structural maintenance of chromosomes protein 5 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CGT3_PYTIN)

HSP 1 Score: 154 bits (389), Expect = 2.830e-44
Identity = 76/145 (52.41%), Postives = 101/145 (69.66%), Query Frame = 1 
Query:   10 GAITRVAMHNFLTYADVNFKPGPKLNIVMGPNGAGKSSIVCAMVLGLAGNPKFLGRSENLNDFIMHEQQHAWVEVELEVHEVGKRVVFRRSFERNVKGSKWQLDGRTHPEKHVKEKIAALGIQVDNLCTFLPQDRVGDFSGYNPQ 444
            G+I RV +HNFLTY D  F PGP+LN+++GPNG GKSSIVCA+ +GLAG+ K LGR++ +  F+ HE+++ + E+EL   + G RV+ R+ F  N   S W LDGR    K V   + A  IQ+DNLC FLPQD+VG+FS  NPQ
Sbjct:   25 GSIYRVKLHNFLTYTDAEFFPGPRLNLILGPNGTGKSSIVCALCVGLAGSTKLLGRADKVGQFVRHEKENGFTEIEL-YFDSGNRVIRRKIFRDNK--SIWYLDGREATLKQVTSMMEAAKIQIDNLCQFLPQDKVGEFSRMNPQ 166
[Close]
BLAST of jgi.p|Trimin1|131823 vs. uniprot
Match: A0A8K0JMX2_9TREE (Uncharacterized protein n=2 Tax=Filobasidium floriforme TaxID=5210 RepID=A0A8K0JMX2_9TREE)

HSP 1 Score: 158 bits (400), Expect = 4.190e-42
Identity = 75/145 (51.72%), Postives = 106/145 (73.10%), Query Frame = 1 
Query:   10 GAITRVAMHNFLTYADVNFKPGPKLNIVMGPNGAGKSSIVCAMVLGLAGNPKFLGRSENLNDFIMHEQQHAWVEVELEVHEVGKRVVFRRSFERNVKGSKWQLDGRTHPEKHVKEKIAALGIQVDNLCTFLPQDRVGDFSGYNPQ 444
            G+I R+ +HNFLTY +V F PGP LN+V+GPNG GKSSIVC + LGL   PK LGR+ +++ FIM  Q  A++E+ELE  + G+ V+ +RSF++N KGS W+L+G++   + V + ++ LGIQVDNLC FLPQD+V  F+   P+
Sbjct:  143 GSILRIKLHNFLTYHNVEFSPGPHLNLVIGPNGTGKSSIVCGIALGLGFPPKVLGRAPDVSSFIMTNQTEAFIELELEGKQEGRNVLIKRSFKKN-KGSVWELNGKSATAQQVSDTVSKLGIQVDNLCCFLPQDKVASFAAMTPK 286
[Close]
BLAST of jgi.p|Trimin1|131823 vs. uniprot
Match: D7FUV3_ECTSI (Structural maintenance of chromosomes protein 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUV3_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 8.940e-42
Identity = 77/145 (53.10%), Postives = 103/145 (71.03%), Query Frame = 1 
Query:   10 GAITRVAMHNFLTYADVNFKPGPKLNIVMGPNGAGKSSIVCAMVLGLAGNPKFLGRSENLNDFIMHE-QQHAWVEVELEVHEVGKRVVFRRSFERNVKGSKWQLDGRTHPEKHVKEKIAALGIQVDNLCTFLPQDRVGDFSGYNP 441
            G+I  + M NFL Y D     GP+LN+V+GPNG+GKS++VCA+ LGL G+PK LGR++NL+ F+MH  ++ A V VEL + + G  +   R+F R    S W ++GR+H  K V+ KI ALGIQVDNLCT LPQD+VGDFSG+ P
Sbjct:   35 GSIVSLKMKNFLVYKDAKAVFGPRLNMVVGPNGSGKSTLVCAIALGLGGSPKVLGRADNLSAFVMHGVKEDASVTVELYMPD-GNNLHVTRTFSRKNNSSNWHINGRSHSTKEVENKIRALGIQVDNLCTMLPQDKVGDFSGFTP 178
[Close]
BLAST of jgi.p|Trimin1|131823 vs. uniprot
Match: A0A397EW01_9STRA (Structural maintenance of chromosomes protein 5 n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EW01_9STRA)

HSP 1 Score: 148 bits (374), Expect = 1.250e-41
Identity = 71/144 (49.31%), Postives = 99/144 (68.75%), Query Frame = 1 
Query:   10 GAITRVAMHNFLTYADVNFKPGPKLNIVMGPNGAGKSSIVCAMVLGLAGNPKFLGRSENLNDFIMHEQQHAWVEVELEVHEVGKRVVFRRSFERNVKGSKWQLDGRTHPEKHVKEKIAALGIQVDNLCTFLPQDRVGDFSGYNP 441
            G++ R+ +HNFLTY D    PGP+LN+V+GPNG GKSSIVCA+ +GL G+ K LGR++ + DF+ HE+   + E+EL      + VV RR+  R+ + S WQLDG+   +  V+E ++   IQ+DNLC FLPQD+VGDFS   P
Sbjct:   13 GSVFRIRLHNFLTYGDAELFPGPRLNVVIGPNGTGKSSIVCALCVGLGGSTKVLGRADKMGDFVQHEKDSGFTEIELFF--TRRNVVIRRNIFRDNR-STWQLDGKESTQNKVREVLSKAKIQIDNLCQFLPQDKVGDFSRMTP 153
[Close]
BLAST of jgi.p|Trimin1|131823 vs. uniprot
Match: A0A2D4C5S1_PYTIN (Structural maintenance of chromosomes protein 5 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C5S1_PYTIN)

HSP 1 Score: 154 bits (388), Expect = 1.700e-40
Identity = 76/145 (52.41%), Postives = 101/145 (69.66%), Query Frame = 1 
Query:   10 GAITRVAMHNFLTYADVNFKPGPKLNIVMGPNGAGKSSIVCAMVLGLAGNPKFLGRSENLNDFIMHEQQHAWVEVELEVHEVGKRVVFRRSFERNVKGSKWQLDGRTHPEKHVKEKIAALGIQVDNLCTFLPQDRVGDFSGYNPQ 444
            G+I RV +HNFLTY D  F PGP+LN+++GPNG GKSSIVCA+ +GLAG+ K LGR++ +  F+ HE+++ + E+EL   + G RV+ R+ F  N   S W LDGR    K V   + A  IQ+DNLC FLPQD+VG+FS  NPQ
Sbjct:   25 GSIYRVKLHNFLTYTDAEFFPGPRLNLILGPNGTGKSSIVCALCVGLAGSTKLLGRADKVGQFVRHEKENGFTEIEL-YFDSGNRVIRRKIFRDNK--SIWYLDGREATLKQVTSLMEAAKIQIDNLCQFLPQDKVGEFSRMNPQ 166
[Close]
BLAST of jgi.p|Trimin1|131823 vs. uniprot
Match: A0A177WTY8_BATDL (Structural maintenance of chromosomes protein 5 n=2 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=A0A177WTY8_BATDL)

HSP 1 Score: 153 bits (386), Expect = 3.290e-40
Identity = 74/140 (52.86%), Postives = 99/140 (70.71%), Query Frame = 1 
Query:   10 GAITRVAMHNFLTYADVNFKPGPKLNIVMGPNGAGKSSIVCAMVLGLAGNPKFLGRSENLNDFIMHEQQHAWVEVELEVHEVGKRVVFRRSFERNVKGSKWQLDGRTHPEKHVKEKIAALGIQVDNLCTFLPQDRVGDFS 429
            G+I R+ + NFLTY+ V F PGP LN+V+GPNG GKS++VCA+ LGL G P  LGR+  L DF+ H +  A VE+EL+V   GK++V  R+FER    S W+++G +  EK +K +I AL IQVDNLC FLPQ+RV  F+
Sbjct:  686 GSIVRIKLTNFLTYSAVEFYPGPNLNMVVGPNGTGKSTVVCAIALGLCGRPDVLGRARELQDFVKHGENKAIVEIELKV--TGKKLVITRTFERGSNQSSWKINGLSAKEKEIKAEIEALAIQVDNLCQFLPQERVSGFA 823
[Close]
BLAST of jgi.p|Trimin1|131823 vs. uniprot
Match: A0A6G0XLU7_9STRA (Structural maintenance of chromosomes protein 5 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XLU7_9STRA)

HSP 1 Score: 152 bits (385), Expect = 4.320e-40
Identity = 74/144 (51.39%), Postives = 103/144 (71.53%), Query Frame = 1 
Query:   10 GAITRVAMHNFLTYADVNFKPGPKLNIVMGPNGAGKSSIVCAMVLGLAGNPKFLGRSENLNDFIMHEQQHAWVEVELEVHEVGKRVVFRRSFERNVKGSKWQLDGRTHPEKHVKEKIAALGIQVDNLCTFLPQDRVGDFSGYNP 441
            G+I R+ +HNFLTYAD    PGP+LN+V+GPNG GKSSIVCA+ +GL G+ K LGR++ + DF+ HE++  + E+EL   +  + VV RR+  R+ + S WQ+DG+   +  VKE +A   IQ+DNLC FLPQD+VGDFS  +P
Sbjct:   13 GSIYRIRLHNFLTYADAELYPGPRLNLVIGPNGTGKSSIVCALCVGLGGSTKVLGRADKMGDFVQHEKESGFTEIELFFKK--RNVVIRRNIYRDNR-STWQIDGKDVSQNKVKEMLANSRIQIDNLCQFLPQDKVGDFSRMSP 153
[Close]
BLAST of jgi.p|Trimin1|131823 vs. uniprot
Match: A0A7S2LL45_9STRA (Structural maintenance of chromosomes protein 5 (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LL45_9STRA)

HSP 1 Score: 152 bits (384), Expect = 4.840e-40
Identity = 75/155 (48.39%), Postives = 101/155 (65.16%), Query Frame = 1 
Query:    1 FHTGAITRVAMHNFLTYADVNFKPGPKLNIVMGPNGAGKSSIVCAMVLGLAGNPKFLGRSENLNDFIMHEQQHAWVEVELEV-------HEVGKRVVFRRSFERNVKGSKWQLDGRTHPEKHVKEKIAALGIQVDNLCTFLPQDRVGDFSGYNPQ 444
            +  G+I RV M NFLTY +V   PGP+LN+V GPNG+GKS+I+CA+ LGL G P  LGR++++  FIMHE++ A +E+EL         H++ KR + R     N   S W ++      K VKE + + G+QVDNLCTFLPQDRVG FSG+  Q
Sbjct:   13 YKPGSILRVKMVNFLTYKEVEVCPGPRLNVVCGPNGSGKSTILCALCLGLGGQPNLLGRADDVKLFIMHEEESAEIEIELAPKDPTQPHHDIIKRHIIRAKGRSNAGASDWYINDEKSSHKEVKELVRSYGVQVDNLCTFLPQDRVGSFSGFTAQ 167
[Close]
BLAST of jgi.p|Trimin1|131823 vs. uniprot
Match: A0A3L6VBE6_9STRA (Structural maintenance of chromosomes protein 5 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VBE6_9STRA)

HSP 1 Score: 148 bits (374), Expect = 6.160e-40
Identity = 71/144 (49.31%), Postives = 99/144 (68.75%), Query Frame = 1 
Query:   10 GAITRVAMHNFLTYADVNFKPGPKLNIVMGPNGAGKSSIVCAMVLGLAGNPKFLGRSENLNDFIMHEQQHAWVEVELEVHEVGKRVVFRRSFERNVKGSKWQLDGRTHPEKHVKEKIAALGIQVDNLCTFLPQDRVGDFSGYNP 441
            G++ R+ +HNFLTY D    PGP+LN+V+GPNG GKSSIVCA+ +GL G+ K LGR++ + DF+ HE+   + E+EL      + VV RR+  R+ + S WQLDG+   +  V+E ++   IQ+DNLC FLPQD+VGDFS   P
Sbjct:   13 GSVFRIRLHNFLTYGDAELFPGPRLNVVIGPNGTGKSSIVCALCVGLGGSTKVLGRADKMGDFVQHEKDSGFTEIELFF--TRRNVVIRRNIFRDNR-STWQLDGKESTQNKVREVLSKAKIQIDNLCQFLPQDKVGDFSRMTP 153
[Close]
BLAST of jgi.p|Trimin1|131823 vs. uniprot
Match: A0A835YM65_9STRA (Mannosyltransferase putative-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM65_9STRA)

HSP 1 Score: 467 bits (1201), Expect = 1.420e-166
Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 1 
Query:    1 RHWLRGVQDAHGAYPEGQFSSGAGIVFCGGGASMLRQVMGQILYLRETLGCTLPVEVMHLGEDEMTDGWRAALQALPDTRVVDLYSLIDPLTQEPVTRPVGSFTHVKPAVVLLSSFEEVIFLDTNNYAMIDPAELLLRDQYKRDGYLMWSDLWLSTSIAHEYAVYSLLQVPPPPGFENSESGVMYWDKRRRWKELVTAWALAKPLAARGTIDGDKQMYGFAFAATGQ 681
            RHWLRGVQDAHGAYPEGQFSSGAGIVFCGGGASMLRQVMGQILYLRETLGCTLPVEVMHLGEDEMTDGWRAALQALPDTRVVDLYSLIDPLTQEPVTRPVGSFTHVKPAVVLLSSFEEVIFLDTNNYAMIDPAELLLRDQYKRDGYLMWSDLWLSTSIAHEYAVYSLLQVPPPPGFENSESGVMYWDKRRRWKELVTAWALAKPLAARGTIDGDKQMYGFAFAATGQ
Sbjct:    1 RHWLRGVQDAHGAYPEGQFSSGAGIVFCGGGASMLRQVMGQILYLRETLGCTLPVEVMHLGEDEMTDGWRAALQALPDTRVVDLYSLIDPLTQEPVTRPVGSFTHVKPAVVLLSSFEEVIFLDTNNYAMIDPAELLLRDQYKRDGYLMWSDLWLSTSIAHEYAVYSLLQVPPPPGFENSESGVMYWDKRRRWKELVTAWALAKPLAARGTIDGDKQMYGFAFAATGQ 227
[Close]
BLAST of jgi.p|Trimin1|131823 vs. uniprot
Match: A0A835YRK4_9STRA (Alpha-mannosyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRK4_9STRA)

HSP 1 Score: 386 bits (992), Expect = 5.030e-135
Identity = 185/206 (89.81%), Postives = 195/206 (94.66%), Query Frame = 1 
Query:   64 GAGIVFCGGGASMLRQVMGQILYLRETLGCTLPVEVMHLGEDEMTDGWRAALQALPDTRVVDLYSLIDPLTQEPVTRPVGSFTHVKPAVVLLSSFEEVIFLDTNNYAMIDPAELLLRDQYKRDGYLMWSDLWLSTSIAHEYAVYSLLQVPPPPGFENSESGVMYWDKRRRWKELVTAWALAKPLAARGTIDGDKQMYGFAFAATGQ 681
            GAGIVFCGGGASMLRQVM QI+YLRETLGCTLP+EVMHLGE EMT GWRAAL+ALPDTRVVDLYSL+DPLT+ PVTRP G+FTHVKPA VLLSSFEEVIFLDTNNYAM+DP ELL RDQY+RDGYLMWSDLWLSTSIAHEYAVYSLLQVPPPPGFENSESGVMYWDKRRRW+ELVTAWAL  PLAARGTI GDKQ+YGFAFAATGQ
Sbjct:    2 GAGIVFCGGGASMLRQVMAQIIYLRETLGCTLPIEVMHLGEAEMTAGWRAALEALPDTRVVDLYSLVDPLTERPVTRPAGAFTHVKPAAVLLSSFEEVIFLDTNNYAMLDPTELLDRDQYRRDGYLMWSDLWLSTSIAHEYAVYSLLQVPPPPGFENSESGVMYWDKRRRWRELVTAWALMTPLAARGTIHGDKQVYGFAFAATGQ 207
[Close]
BLAST of jgi.p|Trimin1|131823 vs. uniprot
Match: A0A1X2GA01_9FUNG (Nucleotide-diphospho-sugar transferase n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GA01_9FUNG)

HSP 1 Score: 92.0 bits (227), Expect = 6.170e-18
Identity = 68/220 (30.91%), Postives = 110/220 (50.00%), Query Frame = 1 
Query:   19 VQDAHGAYPEGQFSSGAGIVFCGGGASMLRQVMGQILYLRETLGCTLPVEVMHLGEDEMTDGWRAALQALPDT-RVVDLYSLIDPLTQEPVTRPVGSFTHVKPAVVLLSSFEEVIFLDTNNYAMIDPAELLLRDQYKRDGYLMWSDLWLSTSIAHEYAVYSLLQVPPPPGFENSESGVMYWDKRRRWKELVTAWALAKPLAARGT-IDGDKQMYGFAFAA 672
            + D+   YP   F  G GIVF  G     ++V+  I  LR    CTLP+EV HL ++  +      L+AL    R +    L+ P+TQ   T        +KPA ++ S FE+V+++D++N    DP  L    +YK +G L W D W  T+ A+   ++++L +     +E  ESG M   K++ W+ L  AW + +        ++GDK  + +A+ A
Sbjct:  130 IDDSQNVYPVNAFH-GRGIVFVAGNRDTYQRVITSIYLLRHH-HCTLPIEVWHLPDEAPSTAIIRQLKALNVMPRDLSNQKLVRPMTQRNGTE---KQFQIKPAAIINSEFEQVLYMDSDNAPTADPTFLFDTPEYKANGALFWPDYW-KTNAAN--GIFNILDIDCQDEWEQ-ESGQMVIHKKKSWRPLQLAWYMNQNNDIYFQFLNGDKDTFKYAWKA 340
[Close]
BLAST of jgi.p|Trimin1|131823 vs. uniprot
Match: F2UJ78_SALR5 (Apple domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UJ78_SALR5)

HSP 1 Score: 91.3 bits (225), Expect = 1.580e-17
Identity = 64/214 (29.91%), Postives = 107/214 (50.00%), Query Frame = 1 
Query:   40 YPEGQFSSGAGIVFCGGGASMLRQVMGQILYLRETLGCTLPVEVMHLGEDEMTDGWRAALQALPDTRVVDLYSLIDPLTQEPVTRPVGS-FTHVKPAVVLLSSFEEVIFLDTNNYAMIDPAELLLRDQYKRDGYLMWSDLWLSTSIAHEYAVYSLLQVPPPPGFENSESGVMYWDKRRRWKELVTAWALAKPLAARGTIDGDKQMYGFAFAATG 678
            YPEG++  G GI+   GG   L   +  +  LR+ LGCTL +++ HLG +E+    R  L A  D    D  +++ P   +P+   VG     +KP  +L S  +EV+ +D++N  ++DP  L     ++  G + W D W ++    +  ++++L + P   +E  ESG +  +KR  W+ L             G I+GDK  + FA+ A G
Sbjct:  227 YPEGKYR-GRGIIIVAGGR-YLASALVSVKMLRD-LGCTLRIQIWHLGPEEVDAAQREVLAAY-DVEPRDFTAVVPPELLKPIESNVGMRLFQLKPLALLYSDLQEVLLIDSDNTPLMDPTYLFSEQGFQDTGTVFWPDYWKTS---FDNPIWAILGMEPKAMWEQ-ESGQLLINKRAAWRGLNLCVHFNSAFYM-GLINGDKDTFRFAWLAAG 431
[Close]
BLAST of jgi.p|Trimin1|131823 vs. uniprot
Match: UPI001B8A120F (hypothetical protein n=1 Tax=Bradyrhizobium diazoefficiens TaxID=1355477 RepID=UPI001B8A120F)

HSP 1 Score: 90.9 bits (224), Expect = 1.680e-17
Identity = 71/216 (32.87%), Postives = 104/216 (48.15%), Query Frame = 1 
Query:   10 LRGVQDAHGAYPEGQFSSGAGIVFCGGGASMLRQVMGQILYLRETLGCTLPVEVMHLGEDEMTDGWRAALQALPDTRVVDLYSLIDPLTQEPVTRPVGSFTHVKPAVVLLSSFEEVIFLDTNNYAMIDPAELLLRDQYKRDGYLMWSDLWLSTSIAHEYAVYSLLQVPPPPGFENSESGVMYWDKRRRWKELVTAWALAKPLA-ARGTIDGDKQMY 654
            LR  Q A    PEG+F+ G GIV C GG          I  LR  LGC+LP++V HLG  E+++G +  L+ L    VVD   +I         R  G +  +KP  +  S F+EV+FLD +   ++DP  +   D Y+    L W D   +  +  E  ++S + +PP     + ES ++  DKRR W  L  A  L +      G + GDK  +
Sbjct:    9 LRRRQAAPAICPEGRFA-GRGIVTCAGGLRYFTCAWMLIWTLRRKLGCSLPIQVWHLGRREISEGMQLILEEL-GVEVVDAEQMISLYP----ARVSGGWP-LKPYAIANSRFQEVLFLDADTIPLVDPETVFDWDVYRSAPALFWPD---NLDLTKENGIWSKVGLPPRDCV-SFESSIIALDKRRCWPLLDLAMLLNEHWEDVYGFLHGDKDTF 213
[Close]
BLAST of jgi.p|Trimin1|131823 vs. uniprot
Match: A0A0D2MT28_9CHLO (Uncharacterized protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MT28_9CHLO)

HSP 1 Score: 90.1 bits (222), Expect = 3.600e-17
Identity = 76/204 (37.25%), Postives = 99/204 (48.53%), Query Frame = 1 
Query:    1 RHWLRGVQDAHGAYPEGQFSSGAGIVFCGGGASMLRQVMGQILYLRETLGCTLPVEVMHLGEDEMTDGWRAALQALPDT-RVVDLYSL-IDPLTQEPVTRP---VGSFTHVKPAVVLLSSFEEVIFLDTNNYAMIDPAELLLRDQYKRDGYLMWSDLWLSTSIAHEYAVYSLLQVPPPPGFENS-ESGVMYWDKRRRWKELVTA 594
            R  L     A   YP G FS GAG+V  GGG   +      +  LR T GC LP+E+ +   +        A   L  T R +D   L I     +P   P   +  FT +K A +LLS F+EVI+LD +N  + DPA LL   +Y   G L+W D W +T +A E     +L VP    F  S ESG M  DK R W+ L+TA
Sbjct:  203 RSQLAAYSAAMPTYPRGAFS-GAGVVTVGGGMRYIIPAWIMVHQLRHT-GCKLPIEMWYPISEWPPQAVVDAFAKLGVTSRKLDFRGLNITAFKHDPKAPPHDTMARFT-IKVAAILLSRFQEVIYLDADNIPLKDPAHLLDGPEYNATGALLWQDFWDNT-VAPE--AEQMLGVPRSDWFRGSFESGQMVVDKARHWRGLLTA 400
[Close]
BLAST of jgi.p|Trimin1|131823 vs. uniprot
Match: A0A2V0P7B2_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P7B2_9CHLO)

HSP 1 Score: 89.7 bits (221), Expect = 5.040e-17
Identity = 73/205 (35.61%), Postives = 101/205 (49.27%), Query Frame = 1 
Query:    1 RHWLRGVQDAHGAYPEGQFSSGAGIVFCGGGASMLRQVMGQILYLRETLGCTLPVEVMHLGEDEMTDGWRAALQALPDT-RVVDLYSL-IDPLTQEPVTRP-----VGSFTHVKPAVVLLSSFEEVIFLDTNNYAMIDPAELLLRDQYKRDGYLMWSDLWLSTSIAHEYAVYSLLQVPPPPGFENSESGVMYWDKRRRWKELVTA 594
            R  L G+  A   YP G FS G GIV  GGG   +      +  LR  LGC LP+E+ +   +   D   AA   L  T R +D   L I    ++P ++      +  FT +K A +LLS FEE+I+LD +N  + DP+ LL   +Y   G L+W D W +T       +  L +    PG  + ESG M  +KRR W+ LV A
Sbjct:  260 RSQLNGLLAAIPGYPHGTFS-GRGIVTVGGGMRYIVPAWMMVHQLRH-LGCRLPIEMWYPETEWPGDEAVAAFARLGVTSRKMDFRGLNITAFKEDPKSKSFDPNGMARFT-IKVAALLLSRFEEIIYLDADNVPLRDPSPLLDTPEYNATGALLWQDFWDNTMAPQAEQMLGLPRSEWYPG--SFESGQMVINKRRHWRGLVVA 459
[Close]
BLAST of jgi.p|Trimin1|131823 vs. uniprot
Match: A0A2K3DCG0_CHLRE (Uncharacterized protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DCG0_CHLRE)

HSP 1 Score: 87.0 bits (214), Expect = 2.800e-16
Identity = 77/222 (34.68%), Postives = 106/222 (47.75%), Query Frame = 1 
Query:   40 YPEGQFSSGAGIVFCGGGASMLRQVMGQILYLRETLGCTLPVEVMHLGEDEMTDGWRAALQALPDTRVVDLYSLIDPLTQEPVTRPVGSFTHVKPAVVLLSSFEEVIFLDTNNYAMIDPAELLLRDQYKRDGYLMWSDLWLSTSIA--HEYAVYSLLQVPPPPGFENSESGVMYWDKRRRWKELVTAWAL---AKPLAARGTI---DGDKQMYGFAFAATGQ 681
            YP   FS G G+V  GGG   L      +  LR++ GC LPVEV     ++ +    AAL+ L    V  L  ++D L Q            +K A +LLSSF+EV+FLD++N A+ DP+ L    QY   G L W D W  +S+   HE   +   QVP        ESG M  DK R W+ L+ A  +    K  A   +     GDK+ + +A  A G+
Sbjct:   28 YPPAAFS-GRGVVMVGGGLHYLIPAWASLSVLRKS-GCHLPVEVWFPVAEQPSRPAVAALEGLGGVAVRTL-DVVD-LQQRGFA--------LKSAALLLSSFQEVLFLDSDNLAVRDPSPLFASPQYAATGALFWRDFWDRSSVPEIHEVLRFPNEQVPKV----TFESGQMVIDKARHWRGLLLAVYMNVYGKTFAELLSCYLGKGDKETFVYAMLAAGE 233
[Close]
BLAST of jgi.p|Trimin1|131823 vs. uniprot
Match: A0A8J4GP40_9CHLO (Uncharacterized protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GP40_9CHLO)

HSP 1 Score: 87.4 bits (215), Expect = 2.970e-16
Identity = 71/213 (33.33%), Postives = 100/213 (46.95%), Query Frame = 1 
Query:   61 SGAGIVFCGGGASMLRQVMGQILYLRETLGCTLPVEVMHLGEDEMTDGWRAALQALPDTRVVDLYSLIDPLTQEPVTRPVGSFTHVKPAVVLLSSFEEVIFLDTNNYAMIDPAELLLRDQYKRDGYLMWSDLWLSTSIAHEYAVYSLLQVPPPPGFENSESGVMYWDKRRRWKELVTA------WALAKPLAARGTIDGDKQMYGFAFAATGQ 681
            SG G+V  GGG   L      +  LR T GC LPVE+    E+  T    A  +AL D  V+        L Q+           VK A +LLSSF+EV+FLD++N  + DP  L   ++Y   G L+W D W  T+      + ++     P G  + ESG M  DK R W+ LV A       A+   L +     GDK+ + ++  ATG+
Sbjct:  328 SGRGVVMVGGGIRYLTPAWASLHVLRRT-GCKLPVELWFPVEEFPTP---AVEEALLDLGVMSRRLSARDLAQKGFG--------VKVAALLLSSFQEVLFLDSDNTVLRDPTFLFESEEYVSTGALLWPDYWDRTAAPEVAQILNISASRLPAG--SFESGEMVIDKARHWRGLVLAAYMNVYGAVFSELLSCYIGKGDKETFAYSMLATGE 526
[Close]
BLAST of jgi.p|Trimin1|131823 vs. uniprot
Match: A0A8J4CTC4_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CTC4_9CHLO)

HSP 1 Score: 87.4 bits (215), Expect = 3.210e-16
Identity = 71/213 (33.33%), Postives = 100/213 (46.95%), Query Frame = 1 
Query:   61 SGAGIVFCGGGASMLRQVMGQILYLRETLGCTLPVEVMHLGEDEMTDGWRAALQALPDTRVVDLYSLIDPLTQEPVTRPVGSFTHVKPAVVLLSSFEEVIFLDTNNYAMIDPAELLLRDQYKRDGYLMWSDLWLSTSIAHEYAVYSLLQVPPPPGFENSESGVMYWDKRRRWKELVTA------WALAKPLAARGTIDGDKQMYGFAFAATGQ 681
            SG G+V  GGG   L      +  LR T GC LPVE+    E+  T    A  +AL D  V+        L Q+           VK A +LLSSF+EV+FLD++N  + DP  L   ++Y   G L+W D W  T+      + ++     P G  + ESG M  DK R W+ LV A       A+   L +     GDK+ + ++  ATG+
Sbjct:  328 SGRGVVMVGGGIRYLTPAWASLHVLRRT-GCKLPVELWFPVEEFPTP---AVEEALLDLGVMSRRLSARDLAQKGFG--------VKVAALLLSSFQEVLFLDSDNTVLRDPTFLFESEEYVSTGALLWPDYWDRTAAPEVAQILNISASRLPAG--SFESGEMVIDKARHWRGLVLAAYMNVYGAVFSELLSCYIGKGDKETFAYSMLATGE 526
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|131823 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YL14_9STRA1.330e-105100.00Structural maintenance of chromosomes protein 5 (F... [more]
A0A2D4CGT3_PYTIN2.830e-4452.41Structural maintenance of chromosomes protein 5 n=... [more]
A0A8K0JMX2_9TREE4.190e-4251.72Uncharacterized protein n=2 Tax=Filobasidium flori... [more]
D7FUV3_ECTSI8.940e-4253.10Structural maintenance of chromosomes protein 5 n=... [more]
A0A397EW01_9STRA1.250e-4149.31Structural maintenance of chromosomes protein 5 n=... [more]
A0A2D4C5S1_PYTIN1.700e-4052.41Structural maintenance of chromosomes protein 5 n=... [more]
A0A177WTY8_BATDL3.290e-4052.86Structural maintenance of chromosomes protein 5 n=... [more]
A0A6G0XLU7_9STRA4.320e-4051.39Structural maintenance of chromosomes protein 5 n=... [more]
A0A7S2LL45_9STRA4.840e-4048.39Structural maintenance of chromosomes protein 5 (F... [more]
A0A3L6VBE6_9STRA6.160e-4049.31Structural maintenance of chromosomes protein 5 n=... [more]

Pages

back to top
BLAST of jgi.p|Trimin1|131823 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YM65_9STRA1.420e-166100.00Mannosyltransferase putative-domain-containing pro... [more]
A0A835YRK4_9STRA5.030e-13589.81Alpha-mannosyltransferase (Fragment) n=1 Tax=Tribo... [more]
A0A1X2GA01_9FUNG6.170e-1830.91Nucleotide-diphospho-sugar transferase n=1 Tax=Hes... [more]
F2UJ78_SALR51.580e-1729.91Apple domain-containing protein n=1 Tax=Salpingoec... [more]
UPI001B8A120F1.680e-1732.87hypothetical protein n=1 Tax=Bradyrhizobium diazoe... [more]
A0A0D2MT28_9CHLO3.600e-1737.25Uncharacterized protein n=1 Tax=Monoraphidium negl... [more]
A0A2V0P7B2_9CHLO5.040e-1735.61Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
A0A2K3DCG0_CHLRE2.800e-1634.68Uncharacterized protein n=2 Tax=Chlamydomonas rein... [more]
A0A8J4GP40_9CHLO2.970e-1633.33Uncharacterized protein n=2 Tax=Volvox reticulifer... [more]
A0A8J4CTC4_9CHLO3.210e-1633.33Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_73contigContig_73:131261..132324 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|131823|gw1.73.17.1
GOsGO:0000166,GO:0000725,GO:0000793,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003697,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0007059,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022402,GO:0030554,GO:0030915,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034641,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051304,GO:0051716,GO:0071139,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0106068,GO:1901265,GO:1901360,GO:1901363,GO:1902494,GO:1990234
Preferred nameSMC5
Descriptionstructural maintenance of
COG categoryBDL
Max annot lvl4751|Fungi
EggNOG OGsCOG1196@1|root,KOG0979@2759|Eukaryota,38DC0@33154|Opisthokonta,3NUF3@4751|Fungi
Evalue5.25e-41
Seed ortholog109871.XP_006680067.1
Hectar predicted targeting categoryother localisation
TranscriptId132145
TrackFilteredModels1
ProteinId131823
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131823gene_12849Tribonema minus UTEX_B_3156 geneContig_73 131261..132324 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12849_1exon_12849_1Tribonema minus UTEX_B_3156 exonContig_73 131261..131473 +
exon_12849_2exon_12849_2Tribonema minus UTEX_B_3156 exonContig_73 132094..132324 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12849CDS_12849Tribonema minus UTEX_B_3156 CDSContig_73 131261..131473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131823Trimin1|131823|gw1.73.17.1Tribonema minus UTEX_B_3156 polypeptideContig_73 131261..132324 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12849 ID=mRNA_12849|Name=jgi.p|Trimin1|131823|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=444bp|location=Sequence derived from alignment at Contig_73:131261..132324+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTCCATACCGGCGCCATCACGCGCGTGGCCATGCACAACTTCCTCACGTA
CGCCGACGTGAACTTCAAACCAGGGCCCAAACTGAACATCGTGATGGGGC
CCAATGGAGCGGGCAAGTCCAGCATCGTCTGCGCCATGGTGCTAGGCTTG
GCGGGCAATCCCAAATTTCTGGGACGTTCCGAGAACTTGAATGACTTCAT
CATGCACGAGCAGCAACACGCGTGGGTCGAGGTGGAGCTGGAGGTGCACG
AGGTCGGCAAGCGCGTCGTCTTCCGCCGCTCCTTCGAGCGCAACGTCAAG
GGCTCCAAGTGGCAGCTCGATGGGCGCACGCACCCGGAGAAGCACGTCAA
GGAGAAGATCGCGGCGCTCGGCATACAGGTGGACAACCTGTGCACGTTCC
TGCCGCAGGACCGGGTCGGCGACTTCAGCGGCTACAACCCGCAG
back to top

protein sequence of jgi.p|Trimin1|131823

>Trimin1|131823|gw1.73.17.1 ID=Trimin1|131823|gw1.73.17.1|Name=jgi.p|Trimin1|131823|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=148bp
FHTGAITRVAMHNFLTYADVNFKPGPKLNIVMGPNGAGKSSIVCAMVLGL
AGNPKFLGRSENLNDFIMHEQQHAWVEVELEVHEVGKRVVFRRSFERNVK
GSKWQLDGRTHPEKHVKEKIAALGIQVDNLCTFLPQDRVGDFSGYNPQ
back to top

mRNA from alignment at Contig_73:131261..132324+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12849 ID=mRNA_12849|Name=jgi.p|Trimin1|131823|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1064bp|location=Sequence derived from alignment at Contig_73:131261..132324+ (Tribonema minus UTEX_B_3156 )
TTCCATACCGGCGCCATCACGCGCGTGGCCATGCACAACTTCCTCACGTA
CGCCGACGTGAACTTCAAACCAGGGCCCAAACTGAACATCGTGATGGGGC
CCAATGGAGCGGGCAAGTCCAGCATCGTCTGCGCCATGGTGCTAGGCTTG
GCGGGCAATCCCAAATTTCTGGGACGTTCCGAGAACTTGAATGACTTCAT
CATGCACGAGCAGGTACGCGTATCCCCAGGCTGATTGTTGTTGACTCGTT
CGCTTCGTCTGCGTTTTTTCGGGGTGTCAGGGGCGAATGGCAGCAACAGG
GTGAAGACGTTTGTGATTGTTTGCCAGAACACAATGGTTTCAAAGATTGA
CTTGCAGCTTAACCTTGTACGACGCATCTACACACGGGCTCCTGTTTTCT
CATGGCTTCTTGCACTTCAAGCAGAATGGTATCTATCACTGCAGACAGGT
GATATCCATGAAGCGCCTTTCTGTGAGCCTTCAGCTCGGTTTCAGATGGC
TGCCCACCTCTGGAGAGTCATGTTTATGTACCCTTGCACTCAGATTAAAA
TACCGAGTTATCCTGCAGAGCACTGCTGCCCTGTCGCCGCGCGCAGCTCA
TATGACAGCCCTGCGTGCTGCTCGACATGCACAGAGATGCACAGGTGGAC
GTGGAGCTGCACGCGCACAGCGCCGGCAAGCACACAACGACTCGCCTTTG
CTTTCACATCACAGACCGCGGCACTGAGATGCCCATCGCGTCCAACATCT
GCGTGCCACGCGCGCCATGCCTCCCCGATTGCGCCGCGTCTCTCTCACGC
CGCGCGCCCCGCACGTGCCGCGCGCGCGCGCAGCAACACGCGTGGGTCGA
GGTGGAGCTGGAGGTGCACGAGGTCGGCAAGCGCGTCGTCTTCCGCCGCT
CCTTCGAGCGCAACGTCAAGGGCTCCAAGTGGCAGCTCGATGGGCGCACG
CACCCGGAGAAGCACGTCAAGGAGAAGATCGCGGCGCTCGGCATACAGGT
GGACAACCTGTGCACGTTCCTGCCGCAGGACCGGGTCGGCGACTTCAGCG
GCTACAACCCGCAG
back to top

Coding sequence (CDS) from alignment at Contig_73:131261..132324+

>mRNA_12849 ID=mRNA_12849|Name=jgi.p|Trimin1|131823|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=444bp|location=Sequence derived from alignment at Contig_73:131261..132324+ (Tribonema minus UTEX_B_3156 )
TTCCATACCGGCGCCATCACGCGCGTGGCCATGCACAACTTCCTCACGTA
CGCCGACGTGAACTTCAAACCAGGGCCCAAACTGAACATCGTGATGGGGC
CCAATGGAGCGGGCAAGTCCAGCATCGTCTGCGCCATGGTGCTAGGCTTG
GCGGGCAATCCCAAATTTCTGGGACGTTCCGAGAACTTGAATGACTTCAT
CATGCACGAGCAGCAACACGCGTGGGTCGAGGTGGAGCTGGAGGTGCACG
AGGTCGGCAAGCGCGTCGTCTTCCGCCGCTCCTTCGAGCGCAACGTCAAG
GGCTCCAAGTGGCAGCTCGATGGGCGCACGCACCCGGAGAAGCACGTCAA
GGAGAAGATCGCGGCGCTCGGCATACAGGTGGACAACCTGTGCACGTTCC
TGCCGCAGGACCGGGTCGGCGACTTCAGCGGCTACAACCCGCAG
back to top