mRNA_12814 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|172109
Unique NamemRNA_12814
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|172109 vs. uniprot
Match: A0A835YJT6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJT6_9STRA)

HSP 1 Score: 228 bits (581), Expect = 7.500e-76
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 
Query:    1 MTCFDHCEITVLRQTFKDLCAISGKGTSVDKETFLQYFPLPGLLGERLFAVFDTKRSGKVDFEEFVCGLAVTCRGDWDQKVDFIFSLYDVHGTGAVSREELTALVSALNQ 330
            MTCFDHCEITVLRQTFKDLCAISGKGTSVDKETFLQYFPLPGLLGERLFAVFDTKRSGKVDFEEFVCGLAVTCRGDWDQKVDFIFSLYDVHGTGAVSREELTALVSALNQ
Sbjct:    1 MTCFDHCEITVLRQTFKDLCAISGKGTSVDKETFLQYFPLPGLLGERLFAVFDTKRSGKVDFEEFVCGLAVTCRGDWDQKVDFIFSLYDVHGTGAVSREELTALVSALNQ 110
[Close]
BLAST of jgi.p|Trimin1|172109 vs. uniprot
Match: A0A836CA22_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA22_9STRA)

HSP 1 Score: 172 bits (437), Expect = 1.840e-53
Identity = 81/104 (77.88%), Postives = 90/104 (86.54%), Query Frame = 1 
Query:   10 FDHCEITVLRQTFKDLCAISGKGTSVDKETFLQYFPLPGLLGERLFAVFDTKRSGKVDFEEFVCGLAVTCRGDWDQKVDFIFSLYDVHGTGAVSREELTALVSA 321
            FD CEI V+R+TFKDLC +SG  T +DKETFLQYFPLPGLLGERLFAVFD K  G+VD+EEFVCGLAVTCRG W +KV+FIF+LYDVHG GAVSR EL ALVSA
Sbjct:   21 FDDCEIKVIRETFKDLCHLSGDNTRIDKETFLQYFPLPGLLGERLFAVFDKKNIGEVDYEEFVCGLAVTCRGSWAEKVEFIFNLYDVHGVGAVSRGELAALVSA 124
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BLAST of jgi.p|Trimin1|172109 vs. uniprot
Match: A0A6H5L0T4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0T4_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 4.970e-45
Identity = 72/103 (69.90%), Postives = 90/103 (87.38%), Query Frame = 1 
Query:   10 FDHCEITVLRQTFKDLCAISGKGTSVDKETFLQYFPLPGLLGERLFAVFDTKRSGKVDFEEFVCGLAVTCRGDWDQKVDFIFSLYDVHGTGAVSREELTALVS 318
            FD CEI V+++TFKDLC ++G    +DKETFLQY PLPGLLGERLFAVFD K SG++D+EEFVCGLAVTCRG W++KV+FIF+LYD+HG GAV+R+EL AL++
Sbjct:   21 FDECEIKVIKETFKDLCHVNGGSMRIDKETFLQYLPLPGLLGERLFAVFDKKSSGEIDYEEFVCGLAVTCRGSWEEKVEFIFNLYDIHGQGAVNRDELAALLN 123
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BLAST of jgi.p|Trimin1|172109 vs. uniprot
Match: D8LIC5_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIC5_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 1.910e-44
Identity = 71/102 (69.61%), Postives = 89/102 (87.25%), Query Frame = 1 
Query:   13 DHCEITVLRQTFKDLCAISGKGTSVDKETFLQYFPLPGLLGERLFAVFDTKRSGKVDFEEFVCGLAVTCRGDWDQKVDFIFSLYDVHGTGAVSREELTALVS 318
            D CEI V+++TFKDLC ++G    +DKETFLQY PLPGLLGERLFAVFD K SG++D+EEFVCGLAVTCRG W++KV+FIF+LYD+HG GAV+R+EL AL++
Sbjct:   17 DECEIKVIKETFKDLCHVNGGSMRIDKETFLQYLPLPGLLGERLFAVFDKKSSGEIDYEEFVCGLAVTCRGSWEEKVEFIFNLYDIHGQGAVNRDELAALLN 118
[Close]
BLAST of jgi.p|Trimin1|172109 vs. uniprot
Match: A0A7S3HBN9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HBN9_9STRA)

HSP 1 Score: 120 bits (300), Expect = 2.910e-29
Identity = 57/105 (54.29%), Postives = 78/105 (74.29%), Query Frame = 1 
Query:   10 FDHCEITVLRQTFKDLCAISGKGTSVDKETFLQYFPLPGLLGERLFAVFDTKRSGKVDFEEFVCGLAVTCRGDWDQKVDFIFSLYDVHGTGAVSREELTALVSAL 324
            FD  EI VLR+T++DL   S  G+ +DKETFLQYFPL GLLGERLFA FD K++G +DF++F+ GLA  CRG  D K+ F+F++YDV     VS+++LT L++ +
Sbjct:   34 FDTDEIHVLRKTWQDLSDRSD-GSGIDKETFLQYFPLNGLLGERLFAQFDNKKTGSIDFDDFILGLATVCRGSMDDKIHFVFNMYDVSHDNTVSKQDLTTLLNQI 137
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BLAST of jgi.p|Trimin1|172109 vs. uniprot
Match: A0A7S0K6K0_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0K6K0_CAFRO)

HSP 1 Score: 114 bits (286), Expect = 4.460e-29
Identity = 58/105 (55.24%), Postives = 75/105 (71.43%), Query Frame = 1 
Query:   10 FDHCEITVLRQTFKDLCAISGKGTSVDKETFLQYFPLPGLLGERLFAVFDTKRSGKVDFEEFVCGLAVTCRGDWDQKVDFIFSLYDVHGTGAVSREELTALVSAL 324
            F   E+TVLR TF +L   S  GT++DK TFL+ FP PGLLGERLF +FDTK++G VD+EEF+ GLA  CRG  D ++ FIF ++D+ G G+VSR EL  L+  L
Sbjct:   36 FTASELTVLRSTFNELSERS-PGTTIDKHTFLKAFPWPGLLGERLFDMFDTKKTGAVDYEEFIVGLARVCRGSVDDRMRFIFEVHDLSGDGSVSRAELRTLLHHL 139
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BLAST of jgi.p|Trimin1|172109 vs. uniprot
Match: A0A5A8D2T4_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D2T4_CAFRO)

HSP 1 Score: 114 bits (286), Expect = 4.310e-28
Identity = 58/105 (55.24%), Postives = 75/105 (71.43%), Query Frame = 1 
Query:   10 FDHCEITVLRQTFKDLCAISGKGTSVDKETFLQYFPLPGLLGERLFAVFDTKRSGKVDFEEFVCGLAVTCRGDWDQKVDFIFSLYDVHGTGAVSREELTALVSAL 324
            F   E+TVLR TF +L   S  GT++DK TFL+ FP PGLLGERLF +FDTK++G VD+EEF+ GLA  CRG  D ++ FIF ++D+ G G+VSR EL  L+  L
Sbjct:   22 FTASELTVLRSTFNELSERS-PGTTIDKHTFLKAFPWPGLLGERLFDMFDTKKTGAVDYEEFIVGLARVCRGSVDDRMRFIFEVHDLSGDGSVSRAELRTLLHHL 125
[Close]
BLAST of jgi.p|Trimin1|172109 vs. uniprot
Match: A0A5A8D2W6_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D2W6_CAFRO)

HSP 1 Score: 114 bits (286), Expect = 9.670e-28
Identity = 58/105 (55.24%), Postives = 75/105 (71.43%), Query Frame = 1 
Query:   10 FDHCEITVLRQTFKDLCAISGKGTSVDKETFLQYFPLPGLLGERLFAVFDTKRSGKVDFEEFVCGLAVTCRGDWDQKVDFIFSLYDVHGTGAVSREELTALVSAL 324
            F   E+TVLR TF +L   S  GT++DK TFL+ FP PGLLGERLF +FDTK++G VD+EEF+ GLA  CRG  D ++ FIF ++D+ G G+VSR EL  L+  L
Sbjct:   22 FTASELTVLRSTFNELSERS-PGTTIDKHTFLKAFPWPGLLGERLFDMFDTKKTGAVDYEEFIVGLARVCRGSVDDRMRFIFEVHDLSGDGSVSRAELRTLLHHL 125
[Close]
BLAST of jgi.p|Trimin1|172109 vs. uniprot
Match: A0A5A8CRD9_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CRD9_CAFRO)

HSP 1 Score: 114 bits (286), Expect = 2.300e-27
Identity = 58/105 (55.24%), Postives = 75/105 (71.43%), Query Frame = 1 
Query:   10 FDHCEITVLRQTFKDLCAISGKGTSVDKETFLQYFPLPGLLGERLFAVFDTKRSGKVDFEEFVCGLAVTCRGDWDQKVDFIFSLYDVHGTGAVSREELTALVSAL 324
            F   E+TVLR TF +L   S  GT++DK TFL+ FP PGLLGERLF +FDTK++G VD+EEF+ GLA  CRG  D ++ FIF ++D+ G G+VSR EL  L+  L
Sbjct:   22 FTASELTVLRSTFNELSERS-PGTTIDKHTFLKAFPWPGLLGERLFDMFDTKKTGAVDYEEFIVGLARVCRGSVDDRMRFIFEVHDLSGDGSVSRAELRTLLHHL 125
[Close]
BLAST of jgi.p|Trimin1|172109 vs. uniprot
Match: A0A7S2RX58_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RX58_9STRA)

HSP 1 Score: 111 bits (278), Expect = 2.680e-26
Identity = 52/102 (50.98%), Postives = 75/102 (73.53%), Query Frame = 1 
Query:   10 FDHCEITVLRQTFKDLCAISGKGTSVDKETFLQYFPLPGLLGERLFAVFDTKRSGKVDFEEFVCGLAVTCRGDWDQKVDFIFSLYDVHGTGAVSREELTALV 315
            F + E+ +L+++FKDL   S  G ++DKETFL++FP+PGL GERLF VFD K +G +D+EEFV GLAV CRG +D+KV  IF +YD+     VS++E+  ++
Sbjct:   19 FTNLELDMLKKSFKDLAQRS-PGKTIDKETFLKFFPMPGLHGERLFKVFDHKMTGVIDYEEFVTGLAVCCRGSFDEKVALIFRIYDIDNNNHVSKDEMRTML 119
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|172109 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YJT6_9STRA7.500e-76100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CA22_9STRA1.840e-5377.88Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5L0T4_9PHAE4.970e-4569.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIC5_ECTSI1.910e-4469.61N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A7S3HBN9_9STRA2.910e-2954.29Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S0K6K0_CAFRO4.460e-2955.24Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A5A8D2T4_CAFRO4.310e-2855.24Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A5A8D2W6_CAFRO9.670e-2855.24Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8CRD9_CAFRO2.300e-2755.24Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A7S2RX58_9STRA2.680e-2650.98Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_89contigContig_89:343932..346248 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|172109|e_gw1.89.32.1
BRITEko00000,ko00001,ko01000,ko01001
KEGG Pathwayko04921,ko04925,map04921,map04925
KEGG koko:K08794,ko:K08808
EC2.7.11.1,2.7.11.17
Descriptionprotein serine/threonine kinase activity
COG categoryT
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0032@1|root,KOG0032@2759|Eukaryota
Evalue3.13e-45
Seed ortholog2880.D8LIC5
Hectar predicted targeting categoryother localisation
TranscriptId172431
TrackFilteredModels1
ProteinId172109
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172109gene_12814Tribonema minus UTEX_B_3156 geneContig_89 343932..346248 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172109Trimin1|172109|e_gw1.89.32.1Tribonema minus UTEX_B_3156 polypeptideContig_89 343932..346248 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12814_2exon_12814_2Tribonema minus UTEX_B_3156 exonContig_89 343932..344168 -
exon_12814_1exon_12814_1Tribonema minus UTEX_B_3156 exonContig_89 346153..346248 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12814CDS_12814Tribonema minus UTEX_B_3156 CDSContig_89 346153..346248 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12814 ID=mRNA_12814|Name=jgi.p|Trimin1|172109|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=333bp|location=Sequence derived from alignment at Contig_89:343932..346248- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTGCTTTGATCACTGCGAGATCACTGTCCTGAGGCAAACTTTCAA
GGACCTCTGCGCCATCAGCGGCAAGGGCACCAGCGTAGACAAAGAGACGT
TTCTCCAGTACTTCCCTCTCCCGGGGCTGCTGGGCGAGCGCCTGTTTGCG
GTGTTTGACACGAAGCGCAGCGGCAAGGTGGACTTTGAGGAGTTTGTGTG
CGGCCTGGCGGTGACGTGCCGCGGCGACTGGGACCAGAAGGTGGACTTCA
TCTTCTCGCTGTACGACGTGCATGGGACGGGCGCGGTGTCGCGCGAGGAG
CTCACGGCGCTGGTGAGCGCCCTTAATCAGTAG
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protein sequence of jgi.p|Trimin1|172109

>Trimin1|172109|e_gw1.89.32.1 ID=Trimin1|172109|e_gw1.89.32.1|Name=jgi.p|Trimin1|172109|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=111bp
MTCFDHCEITVLRQTFKDLCAISGKGTSVDKETFLQYFPLPGLLGERLFA
VFDTKRSGKVDFEEFVCGLAVTCRGDWDQKVDFIFSLYDVHGTGAVSREE
LTALVSALNQ*
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mRNA from alignment at Contig_89:343932..346248-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12814 ID=mRNA_12814|Name=jgi.p|Trimin1|172109|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2317bp|location=Sequence derived from alignment at Contig_89:343932..346248- (Tribonema minus UTEX_B_3156 )
ATGACTTGCTTTGATCACTGCGAGATCACTGTCCTGAGGCAAACTTTCAA
GGACCTCTGCGCCATCAGCGGCAAGGGCACCAGCGTAGACAAAGAGGTGA
GCGGTTCACGTCACCTTGGAGACGCCACCAATTTGCATTCTAGTACGGTG
AAGCGTGTTCGGCGAGAGTTTGAAAATAAATGCATTGAGCGGCCCCTTTG
GCTGCAGTGTGTACTGTGGTACAGGGGTATTATTTGCAGGTAATGCTGCA
CTTTGGAACGTGCAAGCTAGTCATTGGCTTCTGGCGCCGTTCTTCTGATA
GGGAAGCTCGCTTTATATGGCATCAAGGCGTGTGCACATTTGTTGGAGTC
TCGCATTCCGAATGCGTGAATGAATGTGTTGCTCAAAGCAAGTCAATCTG
CGCATAAAATTGTTGCCACGCACGACAGTGCACTGAGTGGGGACACCGGA
ATTCACGAGACGAGTTCAACTCCAGCTTGAAGTTTTGCTTTAAGCCAAGA
GCCTACCTAATGCGCCATGGCTCTGCTCCCAGATTTGCCAGCATCCAGTA
GTTTTAGGCACAGCAGCTCATCATTTTAAACTAAAGCTGACATCCATGTT
ATCCCAAATTAGCTCTGGATCACCTGATGCGCCGCTTGAGGATTCTGAAT
AGTACAAAGTACACAAGAAGTTCAACTGTAGAAGTTGGCAAAAAGGACTC
AGAGACCACACAGCGCCAGGCGTGGTTAACCACTGTCCGGCCACTTTGTG
CTACAGCATCGCTTCGCATGGGAGCTGTTAGCCAGAGTCGCTGATGGGTG
CAACCCTGTCGACTGGCTTTTGCGAATGTTGGCTGCAGAGCACTTTCAGC
GCGCTTCATTATGAACGCGGTCTTGGTGTACTGCACTTGCAGTGTGCACT
GCAGCATCCGGTGACTTACTACTCACTGCATGTGTGTACGTCCGCATTTC
GCATGGCAGACGCCATTTGGTTGGATGGACAAACCTGTTTTTCCAAATAA
CGCAATGTCTGAGTAGTCACCATGACCTGCATCAAGTCATGACTATGACA
CCCTGTGCGCGATTGCACATCACGAGAGGACCCTCCGCGACGCGTCCGCG
CGTAACATGCCTCAGCTGGTGGCACGACGTCGCGTGATCATGTGTGCAGC
ATCTGCTATGTTGCTGTTCACTGTACCTGAGGCCAGTGGACCGTTGTATG
AAAACGAATCAAAAGATCGTAGAGCTCTACTGTAGGTGACAAGGGATGTT
TAGGCGCACGTGCGTTCCACCAATAACCGTGGTCGCCGCTGCTGCAGCAA
TTGGCCACGAGTCAAACAGCACCACCAGATCCACATCAGTCGGAAAAACT
TCTGTGTGCAAGCTTTTAGCGTATAAGGGACGCCCTGCCTGGATGCATGA
GTCGCATCGTCGTACCGCTTTCAGCGCACATGGACGAGCTGGTGACAGAT
GCGATGCGCCACTTGCACTCTGGCCCCAAGTGCTCTCGCCAGAGCATACG
CAGGAATAGTCGGCTGTGGAGGCATTTCATGAGGCTCCTACTGTGCACGC
TACAATCAAAATTGTCAGCAACTACGGCGAACCATACTCTAGATGAAGCA
GGTTACTGTATGGTCAGGATCATGGTGGCTCTCATGTAAACACCGAGGCA
TGAGAAGGCAAGCATCATGTACTTCAACTTCAAGTTCAACTGCAGTACCC
CCAAAGAAGAAGCGCCCTAATCCTCGCCTCCACAGTCCTCTTGCATCAAC
AAGCCCATGCGCATGTGCTGCATAAGCACATCGCACACCCCAGTTGAAAA
CGACAGGCACCTACCTGCGCGTGTGAAACCGACGGGGAGGGTCAGACGGT
GGTCTCTGGCCTGCCGCTTACCCTGGCCTCATCTCCTAGCCACAGCAGCA
CAGCGTTGGACGCCCGGCTGCAGTGACAACCACATTCTGCCCAGCAGCAC
CTGTTCAGAATCAATATTATGCATGCCTGTTCCGCGTGCTCCTCCTCTCA
TGTGATCGCTCGAGGCCAAAGCTGCTCGCAAGCACGTAATTCCACTCCTC
TGACGCAGCACCCCCCCCCCTCTCGTCCAGACGTTTCTCCAGTACTTCCC
TCTCCCGGGGCTGCTGGGCGAGCGCCTGTTTGCGGTGTTTGACACGAAGC
GCAGCGGCAAGGTGGACTTTGAGGAGTTTGTGTGCGGCCTGGCGGTGACG
TGCCGCGGCGACTGGGACCAGAAGGTGGACTTCATCTTCTCGCTGTACGA
CGTGCATGGGACGGGCGCGGTGTCGCGCGAGGAGCTCACGGCGCTGGTGA
GCGCCCTTAATCAGTAG
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Coding sequence (CDS) from alignment at Contig_89:343932..346248-

>mRNA_12814 ID=mRNA_12814|Name=jgi.p|Trimin1|172109|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=333bp|location=Sequence derived from alignment at Contig_89:343932..346248- (Tribonema minus UTEX_B_3156 )
ATGACTTGCTTTGATCACTGCGAGATCACTGTCCTGAGGCAAACTTTCAA
GGACCTCTGCGCCATCAGCGGCAAGGGCACCAGCGTAGACAAAGAGACGT
TTCTCCAGTACTTCCCTCTCCCGGGGCTGCTGGGCGAGCGCCTGTTTGCG
GTGTTTGACACGAAGCGCAGCGGCAAGGTGGACTTTGAGGAGTTTGTGTG
CGGCCTGGCGGTGACGTGCCGCGGCGACTGGGACCAGAAGGTGGACTTCA
TCTTCTCGCTGTACGACGTGCATGGGACGGGCGCGGTGTCGCGCGAGGAG
CTCACGGCGCTGGTGAGCGCCCTTAATCAGTAG
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