mRNA_12807 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|172123
Unique NamemRNA_12807
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|172123 vs. uniprot
Match: A0A835YJK0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJK0_9STRA)

HSP 1 Score: 384 bits (987), Expect = 2.160e-135
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 1 
Query:    1 MLVLQGDDPPAVRCNSCTRRTGVDVWQPRTAFTADLGRGCKTCTAARQLEFSETWRGALLHLLSNSRLSGTPHTRKGGDLTLDQLIAKLHGQHRLCYYSGLRMYSRKGHWRVSLERLNSALGYTDANTVLVKLCQEFNVTDRSGSPHAPPGAGGGWSRAMDDILRTFMKNARMQRGLDVNGAA 549
            MLVLQGDDPPAVRCNSCTRRTGVDVWQPRTAFTADLGRGCKTCTAARQLEFSETWRGALLHLLSNSRLSGTPHTRKGGDLTLDQLIAKLHGQHRLCYYSGLRMYSRKGHWRVSLERLNSALGYTDANTVLVKLCQEFNVTDRSGSPHAPPGAGGGWSRAMDDILRTFMKNARMQRGLDVNGAA
Sbjct:    1 MLVLQGDDPPAVRCNSCTRRTGVDVWQPRTAFTADLGRGCKTCTAARQLEFSETWRGALLHLLSNSRLSGTPHTRKGGDLTLDQLIAKLHGQHRLCYYSGLRMYSRKGHWRVSLERLNSALGYTDANTVLVKLCQEFNVTDRSGSPHAPPGAGGGWSRAMDDILRTFMKNARMQRGLDVNGAA 183
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BLAST of jgi.p|Trimin1|172123 vs. uniprot
Match: A0A836CC95_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC95_9STRA)

HSP 1 Score: 244 bits (622), Expect = 4.640e-77
Identity = 122/177 (68.93%), Postives = 139/177 (78.53%), Query Frame = 1 
Query:    1 MLVLQGDDPPAVRCNSCTRRTGVDVWQPRTAF---TADLGRGCKTCTAARQLEFSETWRGALLHLLSNSRLSGTPHTRKGGDLTLDQLIAKLHGQHRLCYYSGLRMYSRKGHWRVSLERLNSALGYTDANTVLVKLCQEFNVTDRSGSPHAPPGAGGGWSRAMDDILRTFMKNARMQ 522
            M VLQ D+PP VRCN CT+R GVDVW+P T F   T  +G  CK+C A R +  S  WRGA  ++L+++RLS   HTRK GDLTLDQLIAKLHGQ  LC+YS +RMYSRKGHWRVSLERLNSA+GYTDANTVLV  CQEFNV DRSGSP+APP AGGGWSR   + +RTFMKNARMQ
Sbjct:  196 MPVLQRDNPPKVRCNVCTKRAGVDVWKPFTDFAAATVTMG-SCKSCKAVRNMAVSGPWRGAFSNILNDARLSARRHTRKVGDLTLDQLIAKLHGQRGLCFYSDMRMYSRKGHWRVSLERLNSAVGYTDANTVLV--CQEFNVRDRSGSPNAPPTAGGGWSRPKVETVRTFMKNARMQ 369
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BLAST of jgi.p|Trimin1|172123 vs. uniprot
Match: A0A836CDF4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDF4_9STRA)

HSP 1 Score: 169 bits (427), Expect = 1.780e-46
Identity = 86/109 (78.90%), Postives = 91/109 (83.49%), Query Frame = 1 
Query:  223 RKGGDLTLDQLIAKLHGQHRLCYYSGLRMYSRKGHWRVSLERLNSALGYTDANTVLVKLCQEFNVTDRSGSPHAPPGAGGGWSRAMDDILRTFMKNARMQRGLDVNGAA 549
            +K G L LDQLIAKL GQ  LCYYS +RMYSRKG WRVSLERLNSALGYTDANTVLV  CQ+FNVTDRS S HAPP AGG WSRA  + +RTFMKNARMQRGLDVNG A
Sbjct:  435 KKRGGLVLDQLIAKLQGQRGLCYYSDMRMYSRKGDWRVSLERLNSALGYTDANTVLV--CQKFNVTDRSASRHAPPTAGGVWSRAKVETVRTFMKNARMQRGLDVNGTA 541
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BLAST of jgi.p|Trimin1|172123 vs. uniprot
Match: A0A836CBC7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBC7_9STRA)

HSP 1 Score: 149 bits (377), Expect = 4.080e-41
Identity = 75/93 (80.65%), Postives = 79/93 (84.95%), Query Frame = 1 
Query:  271 GQHRLCYYSGLRMYSRKGHWRVSLERLNSALGYTDANTVLVKLCQEFNVTDRSGSPHAPPGAGGGWSRAMDDILRTFMKNARMQRGLDVNGAA 549
            GQ  LCYYS +RMYSRKG WRVSLERLNSALGYTDANTVLV  CQ+FNVTDRS S HAPP AGG WSRA  + +RTFMKNARMQRGLDVNG A
Sbjct:  217 GQRGLCYYSDMRMYSRKGDWRVSLERLNSALGYTDANTVLV--CQKFNVTDRSASRHAPPTAGGVWSRAKVETVRTFMKNARMQRGLDVNGTA 307
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BLAST of jgi.p|Trimin1|172123 vs. uniprot
Match: A0A836CFS8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFS8_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 6.140e-15
Identity = 50/134 (37.31%), Postives = 68/134 (50.75%), Query Frame = 1 
Query:   34 VRCNSCTRRTGVDVWQPRTAFTADLGRGCKTCTAARQLEFSETWRGALLHLLSNSRLSGTPHTRKGG----DLTLDQLIAKLHGQHRLCYYSGLRMYSRKGHWRVSLERLNSALGYTDANTVLVKLCQEFNVTD 423
            V+CN C        ++    F   L RGCK C      E+ ET RG    L+  +R S      KG      LT+ Q++ K   Q  LC+YS + M +++G WR+SLER+N    Y++ NT LV  C EFNV D
Sbjct:  211 VKCNKCNE------YKTPQHFYEHLNRGCKECQTRSNREYLETLRGWATMLVCLARGSAKAKVAKGRVCRVTLTVQQILRKYLLQQGLCWYSNIPMCTKRGDWRMSLERINPTGDYSNDNTCLV--CHEFNVGD 336
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BLAST of jgi.p|Trimin1|172123 vs. uniprot
Match: A0A835Z3N2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3N2_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 7.420e-7
Identity = 45/145 (31.03%), Postives = 69/145 (47.59%), Query Frame = 1 
Query:   64 GVDVWQPRTAFTADLGRGCKTCTAARQLEFSETWRGALLHLLSNSRLSGTPHTRKGGDLTLDQLIAKLHGQHRLCYYSGLRMYSRKGHWRVSLERLNSALGYTDANTVLVKLCQEFN-VTDRSGSPHAPPGAGGGWSRAMDDILR 495
            G D +    +F       C+ C      +F  +W      LL N + + +   ++  D+T+D L      Q  +CYY+ +R+ +  G W VSLERLN+ +GY   N VLV    EFN +  RS +  +    G GW++A    LR
Sbjct:  215 GCDAFLSDDSFCKQSVNVCRICF---NQDFINSWPRRFARLLGNMQ-NHSKLRKQAYDVTMDDLRCLFMRQRGVCYYTNVRL-TINGDWYVSLERLNTEIGYVKGNCVLV--AAEFNAIQHRSRTKES----GHGWTQAKVAKLR 348
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|172123 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835YJK0_9STRA2.160e-135100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CC95_9STRA4.640e-7768.93Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A836CDF4_9STRA1.780e-4678.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CBC7_9STRA4.080e-4180.65Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CFS8_9STRA6.140e-1537.31Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z3N2_9STRA7.420e-731.03Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_89contigContig_89:280452..281003 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|172123|e_gw1.89.36.1
Hectar predicted targeting categoryother localisation
TranscriptId172445
TrackFilteredModels1
ProteinId172123
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172123gene_12807Tribonema minus UTEX_B_3156 geneContig_89 280452..281003 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12807_1exon_12807_1Tribonema minus UTEX_B_3156 exonContig_89 280452..281003 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12807CDS_12807Tribonema minus UTEX_B_3156 CDSContig_89 280452..281003 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172123Trimin1|172123|e_gw1.89.36.1Tribonema minus UTEX_B_3156 polypeptideContig_89 280452..281003 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12807 ID=mRNA_12807|Name=jgi.p|Trimin1|172123|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=552bp|location=Sequence derived from alignment at Contig_89:280452..281003- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGTGCTTCAAGGTGACGACCCTCCGGCAGTAAGATGCAACTCGTG
TACTAGGCGCACCGGAGTTGATGTATGGCAACCTAGGACGGCTTTCACAG
CAGATTTGGGGCGCGGGTGCAAGACCTGCACTGCAGCCAGGCAGTTGGAG
TTCAGCGAGACATGGCGTGGCGCCCTCTTGCATCTGCTCAGCAATTCCAG
ACTCAGCGGCACGCCACACACAAGAAAAGGGGGGGACTTGACGCTCGATC
AACTGATTGCGAAGCTGCACGGGCAGCACAGGCTCTGTTACTACAGTGGG
TTGCGGATGTACTCGAGGAAGGGGCACTGGCGTGTGTCATTGGAGCGACT
CAACTCCGCCCTCGGCTACACCGATGCTAACACGGTCCTCGTTAAACTTT
GTCAGGAGTTCAATGTAACAGACCGCTCAGGCTCACCGCACGCCCCGCCG
GGTGCGGGTGGGGGGTGGTCGCGGGCCATGGATGACATTTTGCGCACGTT
CATGAAGAACGCCCGCATGCAACGAGGCCTCGATGTCAATGGAGCTGCTT
GA
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protein sequence of jgi.p|Trimin1|172123

>Trimin1|172123|e_gw1.89.36.1 ID=Trimin1|172123|e_gw1.89.36.1|Name=jgi.p|Trimin1|172123|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=184bp
MLVLQGDDPPAVRCNSCTRRTGVDVWQPRTAFTADLGRGCKTCTAARQLE
FSETWRGALLHLLSNSRLSGTPHTRKGGDLTLDQLIAKLHGQHRLCYYSG
LRMYSRKGHWRVSLERLNSALGYTDANTVLVKLCQEFNVTDRSGSPHAPP
GAGGGWSRAMDDILRTFMKNARMQRGLDVNGAA*
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mRNA from alignment at Contig_89:280452..281003-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12807 ID=mRNA_12807|Name=jgi.p|Trimin1|172123|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=552bp|location=Sequence derived from alignment at Contig_89:280452..281003- (Tribonema minus UTEX_B_3156 )
ATGCTCGTGCTTCAAGGTGACGACCCTCCGGCAGTAAGATGCAACTCGTG
TACTAGGCGCACCGGAGTTGATGTATGGCAACCTAGGACGGCTTTCACAG
CAGATTTGGGGCGCGGGTGCAAGACCTGCACTGCAGCCAGGCAGTTGGAG
TTCAGCGAGACATGGCGTGGCGCCCTCTTGCATCTGCTCAGCAATTCCAG
ACTCAGCGGCACGCCACACACAAGAAAAGGGGGGGACTTGACGCTCGATC
AACTGATTGCGAAGCTGCACGGGCAGCACAGGCTCTGTTACTACAGTGGG
TTGCGGATGTACTCGAGGAAGGGGCACTGGCGTGTGTCATTGGAGCGACT
CAACTCCGCCCTCGGCTACACCGATGCTAACACGGTCCTCGTTAAACTTT
GTCAGGAGTTCAATGTAACAGACCGCTCAGGCTCACCGCACGCCCCGCCG
GGTGCGGGTGGGGGGTGGTCGCGGGCCATGGATGACATTTTGCGCACGTT
CATGAAGAACGCCCGCATGCAACGAGGCCTCGATGTCAATGGAGCTGCTT
GA
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Coding sequence (CDS) from alignment at Contig_89:280452..281003-

>mRNA_12807 ID=mRNA_12807|Name=jgi.p|Trimin1|172123|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=552bp|location=Sequence derived from alignment at Contig_89:280452..281003- (Tribonema minus UTEX_B_3156 )
ATGCTCGTGCTTCAAGGTGACGACCCTCCGGCAGTAAGATGCAACTCGTG
TACTAGGCGCACCGGAGTTGATGTATGGCAACCTAGGACGGCTTTCACAG
CAGATTTGGGGCGCGGGTGCAAGACCTGCACTGCAGCCAGGCAGTTGGAG
TTCAGCGAGACATGGCGTGGCGCCCTCTTGCATCTGCTCAGCAATTCCAG
ACTCAGCGGCACGCCACACACAAGAAAAGGGGGGGACTTGACGCTCGATC
AACTGATTGCGAAGCTGCACGGGCAGCACAGGCTCTGTTACTACAGTGGG
TTGCGGATGTACTCGAGGAAGGGGCACTGGCGTGTGTCATTGGAGCGACT
CAACTCCGCCCTCGGCTACACCGATGCTAACACGGTCCTCGTTAAACTTT
GTCAGGAGTTCAATGTAACAGACCGCTCAGGCTCACCGCACGCCCCGCCG
GGTGCGGGTGGGGGGTGGTCGCGGGCCATGGATGACATTTTGCGCACGTT
CATGAAGAACGCCCGCATGCAACGAGGCCTCGATGTCAATGGAGCTGCTT
GA
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