mRNA_12772 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|172078
Unique NamemRNA_12772
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|172078 vs. uniprot
Match: A0A835YI19_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI19_9STRA)

HSP 1 Score: 156 bits (395), Expect = 3.090e-39
Identity = 450/450 (100.00%), Postives = 450/450 (100.00%), Query Frame = 1 
Query:    1 MNARLILAAGFGDVDGERALLAQEAAVTASDGEGRTALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEVQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTGDGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDGKGRXXXXXXXXXXXXXXXXXXXXXXAAVTAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEVQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVDREGSTAFRLAVLGSHKSVIAKLMRAGADIGLPAEYTVVRDMITDMCEFIDIPERVNEIVVAFAQRALQARASGPP 1350
            MNARLILAAGFGDVDGERALLAQEAAVTASDGEGRTALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEVQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTGDGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDGKGRXXXXXXXXXXXXXXXXXXXXXXAAVTAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEVQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVDREGSTAFRLAVLGSHKSVIAKLMRAGADIGLPAEYTVVRDMITDMCEFIDIPERVNEIVVAFAQRALQARASGPP
Sbjct:    1 MNARLILAAGFGDVDGERALLAQEAAVTASDGEGRTALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEVQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTGDGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDGKGRXXXXXXXXXXXXXXXXXXXXXXAAVTAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEVQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVDREGSTAFRLAVLGSHKSVIAKLMRAGADIGLPAEYTVVRDMITDMCEFIDIPERVNEIVVAFAQRALQARASGPP 450
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BLAST of jgi.p|Trimin1|172078 vs. uniprot
Match: A0A835ZJ02_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ02_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.340e-18
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 1 
Query: 1192 MRAGADIGLPAEYTVVRDMITDMCEFIDIPERVNEIVVAFAQRALQARASGPP 1350
            MRAGADIGLPAEYTVVR MITDMCEFIDIP+R+NEIVVAFAQRALQ RA GPP
Sbjct:  573 MRAGADIGLPAEYTVVRHMITDMCEFIDIPDRLNEIVVAFAQRALQLRAPGPP 625
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|172078 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YI19_9STRA3.090e-39100.00Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
A0A835ZJ02_9STRA1.340e-1890.57Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_89contigContig_89:7104..8668 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|172078|e_gw1.89.5.1
Hectar predicted targeting categoryother localisation
TranscriptId172400
TrackFilteredModels1
ProteinId172078
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172078gene_12772Tribonema minus UTEX_B_3156 geneContig_89 7104..8668 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12772_1exon_12772_1Tribonema minus UTEX_B_3156 exonContig_89 7104..7280 +
exon_12772_2exon_12772_2Tribonema minus UTEX_B_3156 exonContig_89 7382..8314 +
exon_12772_3exon_12772_3Tribonema minus UTEX_B_3156 exonContig_89 8426..8668 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12772CDS_12772Tribonema minus UTEX_B_3156 CDSContig_89 7104..7280 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172078Trimin1|172078|e_gw1.89.5.1Tribonema minus UTEX_B_3156 polypeptideContig_89 7104..8668 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12772 ID=mRNA_12772|Name=jgi.p|Trimin1|172078|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1353bp|location=Sequence derived from alignment at Contig_89:7104..8668+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGCCCGCCTCATCCTGGCTGCGGGCTTCGGAGATGTCGATGGCGA
ACGGGCGCTGCTGGCGCAAGAGGCGGCGGTGACGGCATCTGACGGGGAGG
GGAGGACTGCGCTCATGTTGGCGGCAATGTACGGCCACGTCGACTGCGTC
AGGGCGCTGCTGGCGCAGAATGCAGCGGTGACGGCAGTTGACGGGGAGGG
GGAAACTGCGCTCATGTCCGCGGCAATCGGTGGCCACATCGACTGCGTCA
GGGCGCTGCTGGCGCACAATGCGGAGGTGCAGGTGACGGCAGTTGACGGG
GAGGGGGAAATCGCGCTCATGAAGGCAGCAATGAATGGCCACGTAGACTG
TGTCGCGACGCTGCTGGCGCACGACGCAGAGGTGCAGGTGACAGCAGTTG
ACGGGGAGGGGATAACTGCGCTCATGTGGGGAGCGATGAACGGCCATGTA
GGCTGTGTCACGGCGCTGCTGGCGCACGACGCAAAGGTGCAGGTGACGGC
AGTTGACGGCACCGGGGATGGGGAAACTGCGCTCATGTGGGCAGCAATGT
ACGGCCACGTCGACTGTGTCACGGCGCTGCTGGCGCACGATGCAGAGGTG
CAGGTGACGGCAGGTGACGGGAAGGGGAGAACGGCGCTCATGTTGGCAGC
AAACACCGGCTACATCGACTGCGTCAGGGTGCTGCTGAAGCATGACGCGG
CGGTGACGGCAGTTGACGGGAGGGGGAGAACGGCGCTCATGTGGGCAGCA
GACGCCGGCTGCGTCGACTGCGTCAGGACGCTGTTAGCGCATGACGCGGC
GGTGACGGCAGCTGACGGGAAGGGGAGAACGGCGCTCATGCGGGCAGCAA
GGAACGGCCATGTAGACAGTATCACACATCTGCTGGCGCACGATGCGGAG
GTGCAAGTGACGGCAGTGGACGGGAGGCGGGAAACGGCGCTCATGCGGGC
AGCAATGACAGGCCACGTAGGCTGTGTCACGGCGCTGCTGGCGCACGACG
TGGAGGTGCAGGTGACGGCAGTTGACGGGGAGGGGAGAACGGCGCTCATA
TGGGCAGCAAGCACCGGCCGCGCTGACTGCGTCACGACGCTGCTGGCGCA
CGACGCGGAAGTCGCAGCAGTCGACAGGGAGGGGAGCACGGCCTTCCGTC
TGGCAGTGCTGGGATCACACAAGAGTGTTATCGCAAAGCTGATGAGGGCA
GGCGCCGATATAGGGCTGCCGGCCGAGTACACGGTAGTCCGAGACATGAT
CACCGACATGTGTGAGTTTATCGACATACCTGAGCGTGTGAATGAGATCG
TGGTCGCGTTCGCGCAGAGGGCGTTGCAGGCACGCGCCTCAGGCCCCCCA
TAG
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protein sequence of jgi.p|Trimin1|172078

>Trimin1|172078|e_gw1.89.5.1 ID=Trimin1|172078|e_gw1.89.5.1|Name=jgi.p|Trimin1|172078|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=451bp
MNARLILAAGFGDVDGERALLAQEAAVTASDGEGRTALMLAAMYGHVDCV
RALLAQNAAVTAVDGEGETALMSAAIGGHIDCVRALLAHNAEVQVTAVDG
EGEIALMKAAMNGHVDCVATLLAHDAEVQVTAVDGEGITALMWGAMNGHV
GCVTALLAHDAKVQVTAVDGTGDGETALMWAAMYGHVDCVTALLAHDAEV
QVTAGDGKGRTALMLAANTGYIDCVRVLLKHDAAVTAVDGRGRTALMWAA
DAGCVDCVRTLLAHDAAVTAADGKGRTALMRAARNGHVDSITHLLAHDAE
VQVTAVDGRRETALMRAAMTGHVGCVTALLAHDVEVQVTAVDGEGRTALI
WAASTGRADCVTTLLAHDAEVAAVDREGSTAFRLAVLGSHKSVIAKLMRA
GADIGLPAEYTVVRDMITDMCEFIDIPERVNEIVVAFAQRALQARASGPP
*
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mRNA from alignment at Contig_89:7104..8668+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12772 ID=mRNA_12772|Name=jgi.p|Trimin1|172078|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1565bp|location=Sequence derived from alignment at Contig_89:7104..8668+ (Tribonema minus UTEX_B_3156 )
ATGAACGCCCGCCTCATCCTGGCTGCGGGCTTCGGAGATGTCGATGGCGA
ACGGGCGCTGCTGGCGCAAGAGGCGGCGGTGACGGCATCTGACGGGGAGG
GGAGGACTGCGCTCATGTTGGCGGCAATGTACGGCCACGTCGACTGCGTC
AGGGCGCTGCTGGCGCAGAATGCAGCGGTGCAGTCGACGGGGAGGGGAGC
ACTGCGCTCATGTGGGCAGCAATGTACGGCTACGTCGACTGTGTCACGGC
GCTGCTTGCGCACAATGCGGCGGTGCAGGTGACGGCAGTTGACGGGGAGG
GGGAAACTGCGCTCATGTCCGCGGCAATCGGTGGCCACATCGACTGCGTC
AGGGCGCTGCTGGCGCACAATGCGGAGGTGCAGGTGACGGCAGTTGACGG
GGAGGGGGAAATCGCGCTCATGAAGGCAGCAATGAATGGCCACGTAGACT
GTGTCGCGACGCTGCTGGCGCACGACGCAGAGGTGCAGGTGACAGCAGTT
GACGGGGAGGGGATAACTGCGCTCATGTGGGGAGCGATGAACGGCCATGT
AGGCTGTGTCACGGCGCTGCTGGCGCACGACGCAAAGGTGCAGGTGACGG
CAGTTGACGGCACCGGGGATGGGGAAACTGCGCTCATGTGGGCAGCAATG
TACGGCCACGTCGACTGTGTCACGGCGCTGCTGGCGCACGATGCAGAGGT
GCAGGTGACGGCAGGTGACGGGAAGGGGAGAACGGCGCTCATGTTGGCAG
CAAACACCGGCTACATCGACTGCGTCAGGGTGCTGCTGAAGCATGACGCG
GCGGTGACGGCAGTTGACGGGAGGGGGAGAACGGCGCTCATGTGGGCAGC
AGACGCCGGCTGCGTCGACTGCGTCAGGACGCTGTTAGCGCATGACGCGG
CGGTGACGGCAGCTGACGGGAAGGGGAGAACGGCGCTCATGCGGGCAGCA
AGGAACGGCCATGTAGACAGTATCACACATCTGCTGGCGCACGATGCGGA
GGTGCAAGTGACGGCAGTGGACGGGAGGCGGGAAACGGCGCTCATGCGGG
CAGCAATGACAGGCCACGTAGGCTGTGTCACGGCGCTGCTGGCGCACGAC
GTGGAGGTGCAGGTGACGGCAGTTGACGGGGAGGGGAGAACGGCGCTCAT
ATGGGCAGCAAGCACCGGCCGCGCTGACTGCGTCACGACGCTGCTGGCGC
ACGACGCGGAAGTGCAGGTGACGGCAGTTGACGGGAGGCGGCGAACGGCG
CTCATGTAGGCAGCGAGGAACGGCCACGTCGGCTGCGTCGCGGCGCTGCT
TCAGCACAGGGCGGCGGAACAGGTCGCAGCAGTCGACAGGGAGGGGAGCA
CGGCCTTCCGTCTGGCAGTGCTGGGATCACACAAGAGTGTTATCGCAAAG
CTGATGAGGGCAGGCGCCGATATAGGGCTGCCGGCCGAGTACACGGTAGT
CCGAGACATGATCACCGACATGTGTGAGTTTATCGACATACCTGAGCGTG
TGAATGAGATCGTGGTCGCGTTCGCGCAGAGGGCGTTGCAGGCACGCGCC
TCAGGCCCCCCATAG
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Coding sequence (CDS) from alignment at Contig_89:7104..8668+

>mRNA_12772 ID=mRNA_12772|Name=jgi.p|Trimin1|172078|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1353bp|location=Sequence derived from alignment at Contig_89:7104..8668+ (Tribonema minus UTEX_B_3156 )
ATGAACGCCCGCCTCATCCTGGCTGCGGGCTTCGGAGATGTCGATGGCGA
ACGGGCGCTGCTGGCGCAAGAGGCGGCGGTGACGGCATCTGACGGGGAGG
GGAGGACTGCGCTCATGTTGGCGGCAATGTACGGCCACGTCGACTGCGTC
AGGGCGCTGCTGGCGCAGAATGCAGCGGTGACGGCAGTTGACGGGGAGGG
GGAAACTGCGCTCATGTCCGCGGCAATCGGTGGCCACATCGACTGCGTCA
GGGCGCTGCTGGCGCACAATGCGGAGGTGCAGGTGACGGCAGTTGACGGG
GAGGGGGAAATCGCGCTCATGAAGGCAGCAATGAATGGCCACGTAGACTG
TGTCGCGACGCTGCTGGCGCACGACGCAGAGGTGCAGGTGACAGCAGTTG
ACGGGGAGGGGATAACTGCGCTCATGTGGGGAGCGATGAACGGCCATGTA
GGCTGTGTCACGGCGCTGCTGGCGCACGACGCAAAGGTGCAGGTGACGGC
AGTTGACGGCACCGGGGATGGGGAAACTGCGCTCATGTGGGCAGCAATGT
ACGGCCACGTCGACTGTGTCACGGCGCTGCTGGCGCACGATGCAGAGGTG
CAGGTGACGGCAGGTGACGGGAAGGGGAGAACGGCGCTCATGTTGGCAGC
AAACACCGGCTACATCGACTGCGTCAGGGTGCTGCTGAAGCATGACGCGG
CGGTGACGGCAGTTGACGGGAGGGGGAGAACGGCGCTCATGTGGGCAGCA
GACGCCGGCTGCGTCGACTGCGTCAGGACGCTGTTAGCGCATGACGCGGC
GGTGACGGCAGCTGACGGGAAGGGGAGAACGGCGCTCATGCGGGCAGCAA
GGAACGGCCATGTAGACAGTATCACACATCTGCTGGCGCACGATGCGGAG
GTGCAAGTGACGGCAGTGGACGGGAGGCGGGAAACGGCGCTCATGCGGGC
AGCAATGACAGGCCACGTAGGCTGTGTCACGGCGCTGCTGGCGCACGACG
TGGAGGTGCAGGTGACGGCAGTTGACGGGGAGGGGAGAACGGCGCTCATA
TGGGCAGCAAGCACCGGCCGCGCTGACTGCGTCACGACGCTGCTGGCGCA
CGACGCGGAAGTCGCAGCAGTCGACAGGGAGGGGAGCACGGCCTTCCGTC
TGGCAGTGCTGGGATCACACAAGAGTGTTATCGCAAAGCTGATGAGGGCA
GGCGCCGATATAGGGCTGCCGGCCGAGTACACGGTAGTCCGAGACATGAT
CACCGACATGTGTGAGTTTATCGACATACCTGAGCGTGTGAATGAGATCG
TGGTCGCGTTCGCGCAGAGGGCGTTGCAGGCACGCGCCTCAGGCCCCCCA
TAG
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