mRNA_12764 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|5329 vs. uniprot
Match: A0A835ZK23_9STRA (Ribosomal protein L13 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK23_9STRA) HSP 1 Score: 308 bits (790), Expect = 1.540e-105 Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 2 Query: 44 MSVANVLLRRSHRPMWHLVDAKDQIVGRLATQIAPLLVGKHKPTYSPNVACGDIVVVINAADVQFTGKKWTDKVYRWHSGYPGGLKERTPKQQLERRPEEILRRAVMGMLPKNKLRSRMILQLKIYEGPAHPHEGDLRGKSNILQGPDD 490 MSVANVLLRRSHRPMWHLVDAKDQIVGRLATQIAPLLVGKHKPTYSPNVACGDIVVVINAADVQFTGKKWTDKVYRWHSGYPGGLKERTPKQQLERRPEEILRRAVMGMLPKNKLRSRMILQLKIYEGPAHPHEGDLRGKSNILQGPDD Sbjct: 1 MSVANVLLRRSHRPMWHLVDAKDQIVGRLATQIAPLLVGKHKPTYSPNVACGDIVVVINAADVQFTGKKWTDKVYRWHSGYPGGLKERTPKQQLERRPEEILRRAVMGMLPKNKLRSRMILQLKIYEGPAHPHEGDLRGKSNILQGPDD 149
BLAST of jgi.p|Trimin1|5329 vs. uniprot
Match: D8LST0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LST0_ECTSI) HSP 1 Score: 188 bits (478), Expect = 9.860e-58 Identity = 86/127 (67.72%), Postives = 101/127 (79.53%), Query Frame = 2 Query: 74 SHRPMWHLVDAKDQIVGRLATQIAPLLVGKHKPTYSPNVACGDIVVVINAADVQFTGKKWTDKVYRWHSGYPGGLKERTPKQQLERRPEEILRRAVMGMLPKNKLRSRMILQLKIYEGPAHPHEGDL 454 +H+ WHL+DA QIVGRLA QIAP++ GKHKPT+ PN CGD+VVV+NA V+FTG KW KVYRWHSG+PGGLKER QL R+PEEILRRAVMGMLPKN LR RM+ +L IY GP+HPH+ L Sbjct: 10 NHKAKWHLIDASGQIVGRLAAQIAPIIRGKHKPTFCPNDDCGDVVVVVNANAVEFTGNKWQKKVYRWHSGFPGGLKERPADDQLVRKPEEILRRAVMGMLPKNSLRKRMVTKLLIYPGPSHPHDDRL 136
BLAST of jgi.p|Trimin1|5329 vs. uniprot
Match: A0A7S2UNE7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UNE7_9STRA) HSP 1 Score: 177 bits (448), Expect = 4.930e-53 Identity = 79/123 (64.23%), Postives = 100/123 (81.30%), Query Frame = 2 Query: 89 WHLVDAKDQIVGRLATQIAPLLVGKHKPTYSPNVACGDIVVVINAADVQFTGKKWTDKVYRWHSGYPGGLKERTPKQQLERRPEEILRRAVMGMLPKNKLRSRMIL-QLKIYEGPAHPHEGDL 454 WHLVDA+ Q VGRLATQ+AP+L GKHKPTY P+ CGDIVV+INA V F+GKKW DK+YRWH+G+PGGLK+RT K+ L+R+PE+IL++A++GML + KLR + I +LKIY GP HPH L Sbjct: 20 WHLVDAQSQTVGRLATQLAPILKGKHKPTYKPHTDCGDIVVIINAEKVHFSGKKWNDKLYRWHTGFPGGLKQRTAKEMLQRKPEDILKKAILGMLSRTKLRHKYIEPRLKIYTGPIHPHSAQL 142
BLAST of jgi.p|Trimin1|5329 vs. uniprot
Match: A0A7S3Q0X2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q0X2_9STRA) HSP 1 Score: 173 bits (439), Expect = 7.810e-52 Identity = 80/129 (62.02%), Postives = 99/129 (76.74%), Query Frame = 2 Query: 71 RSHRPMWHLVDAKDQIVGRLATQIAPLLVGKHKPTYSPNVACGDIVVVINAADVQFTGKKWTDKVYRWHSGYPGGLKERTPKQQLERRPEEILRRAVMGMLPKNKLRSRMIL-QLKIYEGPAHPHEGDL 454 RS + WH+VDA Q VGRLA IAPLL GKHKPTY PN CGD VV++NA V FTGKKW DK+YRWH+G+PGGLK+R K+ LER+PE+IL++A++GM+ +N LR + I +LKIY GP HPH G L Sbjct: 6 RSLQRAWHIVDASTQTVGRLAANIAPLLKGKHKPTYRPNGDCGDYVVIVNAEKVNFTGKKWNDKLYRWHTGFPGGLKQRRAKEMLERQPEKILKKAILGMIHRNNLRHKYIEPRLKIYSGPNHPHTGQL 134
BLAST of jgi.p|Trimin1|5329 vs. uniprot
Match: F0WMW5_9STRA (50S ribosomal protein L13 putative n=2 Tax=Albugo TaxID=65356 RepID=F0WMW5_9STRA) HSP 1 Score: 170 bits (431), Expect = 5.100e-51 Identity = 80/129 (62.02%), Postives = 98/129 (75.97%), Query Frame = 2 Query: 89 WHLVDAKDQIVGRLATQIAPLLVGKHKPTYSPNVACGDIVVVINAADVQFTGKKWTDKVYRWHSGYPGGLKERTPKQQLERRPEEILRRAVMGMLPKNKLRSRMILQLKIYEGPAHPHEGDLRGKSNIL 475 WH+VDAK QIVGRLA+Q+AP+L GKHKPTY+PNV CGD +VVINA D+ FTG KW K+YRWH+G+PGGLKERT K+ R+PEEILR+AV GMLPKNK+R I +LKI+ H + + IL Sbjct: 14 WHVVDAKGQIVGRLASQLAPILCGKHKPTYAPNVDCGDHLVVINAKDLVFTGDKWNQKLYRWHTGHPGGLKERTAKEMFARKPEEILRKAVYGMLPKNKMRKLQIQKLKIFLDEEHDFQDKVGTNPVIL 142
BLAST of jgi.p|Trimin1|5329 vs. uniprot
Match: A0A3F2S0U4_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S0U4_9STRA) HSP 1 Score: 170 bits (431), Expect = 5.430e-51 Identity = 76/138 (55.07%), Postives = 105/138 (76.09%), Query Frame = 2 Query: 71 RSHRPMWHLVDAKDQIVGRLATQIAPLLVGKHKPTYSPNVACGDIVVVINAADVQFTGKKWTDKVYRWHSGYPGGLKERTPKQQLERRPEEILRRAVMGMLPKNKLRSRMILQLKIYEGPAHPHEGDLRGKSNILQGP 484 ++ + +WH+VDAK Q++GRLA+Q+AP+L GKHKPTY+PNV CGD VVVINA D++ TG KW +K+YRWH+G+PGGLK+RT K ER+PEE+LR+AV GMLPKN++R+ +LKI+ G H + + +L P Sbjct: 6 QASKVVWHVVDAKGQVLGRLASQLAPILRGKHKPTYAPNVDCGDYVVVINAKDIELTGNKWNNKLYRWHTGHPGGLKQRTAKDLFERKPEEVLRKAVFGMLPKNRMRALQDKKLKIFLGDEHDFTAEFTFEFLLLTLP 143
BLAST of jgi.p|Trimin1|5329 vs. uniprot
Match: A0A2D4BZ50_PYTIN (Mitochondrial/chloroplast ribosomal protein L13 n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BZ50_PYTIN) HSP 1 Score: 169 bits (428), Expect = 1.450e-50 Identity = 77/137 (56.20%), Postives = 102/137 (74.45%), Query Frame = 2 Query: 65 LRRSHRPMWHLVDAKDQIVGRLATQIAPLLVGKHKPTYSPNVACGDIVVVINAADVQFTGKKWTDKVYRWHSGYPGGLKERTPKQQLERRPEEILRRAVMGMLPKNKLRSRMILQLKIYEGPAHPHEGDLRGKSNIL 475 + ++ + MWH+VDAK Q++GRLA+Q+AP+L GKHKPTY+PNV CGD VVVINA D+ TG KW K+YRWH+G+PGGLK+RT ++ ER+PEE+LRRAV GMLPKNK+R +LKI+ H + + IL Sbjct: 6 IAKASKVMWHVVDAKGQVLGRLASQLAPILRGKHKPTYAPNVDCGDYVVVINAKDIVLTGDKWDQKLYRWHTGHPGGLKQRTAREMFERKPEEVLRRAVFGMLPKNKMRKLQDQKLKIFLDEEHDFKEQVGENPVIL 142
BLAST of jgi.p|Trimin1|5329 vs. uniprot
Match: H3G8X3_PHYRM (Uncharacterized protein n=24 Tax=Peronosporaceae TaxID=4777 RepID=H3G8X3_PHYRM) HSP 1 Score: 168 bits (425), Expect = 3.890e-50 Identity = 73/124 (58.87%), Postives = 100/124 (80.65%), Query Frame = 2 Query: 65 LRRSHRPMWHLVDAKDQIVGRLATQIAPLLVGKHKPTYSPNVACGDIVVVINAADVQFTGKKWTDKVYRWHSGYPGGLKERTPKQQLERRPEEILRRAVMGMLPKNKLRSRMILQLKIYEGPAH 436 + ++ + WH+VDAK Q++GRLA+Q+AP+L GKHKPTY+PNV CGD VVVINA D+ TG KW +K+YRWH+G+PGGLK+RT K+ ER+PE++LR+AV GMLPKN++R+ +LKI+ G H Sbjct: 4 IAQASKVAWHVVDAKGQVLGRLASQLAPILRGKHKPTYAPNVDCGDFVVVINAKDIVLTGNKWNNKLYRWHTGHPGGLKQRTAKELFERKPEDVLRKAVFGMLPKNRMRALQDKKLKIFMGDEH 127
BLAST of jgi.p|Trimin1|5329 vs. uniprot
Match: B8BX67_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BX67_THAPS) HSP 1 Score: 168 bits (425), Expect = 3.890e-50 Identity = 85/144 (59.03%), Postives = 100/144 (69.44%), Query Frame = 2 Query: 44 MSVANVLLRRSHRPMWHLVDAKDQIVGRLATQIAPLLVGKHKPTYSPNVACGDIVVVINAADVQFTGKKWTDKVYRWHSGYPGGLKERTPKQQLERRPEEILRRAVMGMLPKNKLR-SRMILQLKIYEGPAHPHEGDLRGKSNI 472 MS L+R+ WHLVDA Q VGRLAT IAP+L GKHKPTY PN CGD VV++NA V +G KW DK+YRWH+GYPGGLKER K LER+PE ILR+A++GML +N LR S M +LKIY G HPHE L N+ Sbjct: 1 MSFPGKALQRT----WHLVDATSQTVGRLATTIAPILKGKHKPTYRPNGDCGDYVVIVNADKVHLSGNKWDDKIYRWHTGYPGGLKERPAKDMLERKPEFILRKAILGMLYRNNLRESYMEPRLKIYAGSEHPHEAQLPRGVNV 140
BLAST of jgi.p|Trimin1|5329 vs. uniprot
Match: T0R0U4_SAPDV (50S ribosomal protein L13 n=3 Tax=Saprolegniaceae TaxID=4764 RepID=T0R0U4_SAPDV) HSP 1 Score: 168 bits (425), Expect = 4.010e-50 Identity = 77/132 (58.33%), Postives = 100/132 (75.76%), Query Frame = 2 Query: 80 RPMWHLVDAKDQIVGRLATQIAPLLVGKHKPTYSPNVACGDIVVVINAADVQFTGKKWTDKVYRWHSGYPGGLKERTPKQQLERRPEEILRRAVMGMLPKNKLRSRMILQLKIYEGPAHPHEGDLRGKSNIL 475 R +H+VDAK Q+VGRLA+Q+AP+L GKHKPTY+PNV CGD+VVV+NA D+ TG KW DK+YRWH+G+PGGLK RT KQ E+ ++LR+AVMGMLPKNK+R+ I +LKI+ G H + +L L Sbjct: 10 RIAYHVVDAKGQVVGRLASQLAPILRGKHKPTYAPNVDCGDVVVVLNAKDIVLTGNKWDDKLYRWHTGFPGGLKTRTAKQIKEKDEGDVLRKAVMGMLPKNKMRALQIAKLKIFAGDEHTFQAELGENPKFL 141 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|5329 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_12764 ID=mRNA_12764|Name=jgi.p|Trimin1|5329|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=612bp|location=Sequence derived from alignment at Contig_105:493535..494885- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CTGGGACAGCTTTCAGCGCAGTGGCGCTGACAGGTGTTGGCTCATGTCGGback to top protein sequence of jgi.p|Trimin1|5329 >Trimin1|5329|CE5328_122 ID=Trimin1|5329|CE5328_122|Name=jgi.p|Trimin1|5329|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=150bp MSVANVLLRRSHRPMWHLVDAKDQIVGRLATQIAPLLVGKHKPTYSPNVAback to top mRNA from alignment at Contig_105:493535..494885- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_12764 ID=mRNA_12764|Name=jgi.p|Trimin1|5329|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1351bp|location=Sequence derived from alignment at Contig_105:493535..494885- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_105:493535..494885- >mRNA_12764 ID=mRNA_12764|Name=jgi.p|Trimin1|5329|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=450bp|location=Sequence derived from alignment at Contig_105:493535..494885- (Tribonema minus UTEX_B_3156 )back to top |