mRNA_12749 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|146742
Unique NamemRNA_12749
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|146742 vs. uniprot
Match: A0A835ZJE4_9STRA (Ankyrin repeat-containing domain protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJE4_9STRA)

HSP 1 Score: 196 bits (498), Expect = 6.790e-60
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 1 
Query:    1 TALWLAAQAGRVPVVQYLVDEGSALELPNSLGQTPLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHVEAAQXXXXXXXXXXXXXXXXXXXXXXVALENAPRLDVRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGRTALYLSAAAGSAGCARKLLNKGAAPGAAAADGTTPLWSAAYGGFDRIVAMLMEKGATAALAT 654
            TALWLAAQAGRVPVVQYLVDEGSALELPNSLGQTPLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHVEAAQXXXXXXXXXXXXXXXXXXXXXXVALENAPRLDVRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGRTALYLSAAAGSAGCARKLLNKGAAPGAAAADGTTPLWSAAYGGFDRIVAMLMEKGATAALAT
Sbjct:    1 TALWLAAQAGRVPVVQYLVDEGSALELPNSLGQTPLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHVEAAQXXXXXXXXXXXXXXXXXXXXXXVALENAPRLDVRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGRTALYLSAAAGSAGCARKLLNKGAAPGAAAADGTTPLWSAAYGGFDRIVAMLMEKGATAALAT 218
[Close]
BLAST of jgi.p|Trimin1|146742 vs. uniprot
Match: A0A836CMF9_9STRA (Ankyrin repeat-containing domain protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMF9_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 7.150e-7
Identity = 27/37 (72.97%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    1 TALWLAAQAGRVPVVQYLVDEGSALELPNSLGQTPLY 111
            +ALWLAAQ G++ VVQ+LVDEGSAL+L N+ GQTPLY
Sbjct:   39 SALWLAAQGGKLAVVQFLVDEGSALDLMNASGQTPLY 75
[Close]
BLAST of jgi.p|Trimin1|146742 vs. uniprot
Match: C1MS08_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MS08_MICPC)

HSP 1 Score: 52.8 bits (125), Expect = 7.580e-5
Identity = 30/61 (49.18%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:  460 EGRTALYLSAAAGSAGCARKLLNKGAAPGAAAADGTTPLWSAAYGGFDRIVAMLMEKGATA 642
            +G TAL+L+   G A CAR LL++GA+P A   D  TPL  A+ GGFD +VA+L++  A A
Sbjct:  101 DGDTALHLACLYGHAACARLLLSRGASPSARDGDDGTPLHDASAGGFDDVVALLIDAAARA 161
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|146742 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835ZJE4_9STRA6.790e-60100.00Ankyrin repeat-containing domain protein (Fragment... [more]
A0A836CMF9_9STRA7.150e-772.97Ankyrin repeat-containing domain protein (Fragment... [more]
C1MS08_MICPC7.580e-549.18Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_105contigContig_105:415966..418446 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|146742|gw1.105.63.1
BRITEko00000,ko04121
KEGG koko:K10335
DescriptionAnkyrin repeats (many copies)
COG categoryS
Max annot lvl3041|Chlorophyta
EggNOG OGsCOG0666@1|root,KOG0504@2759|Eukaryota,37TFW@33090|Viridiplantae,34MYT@3041|Chlorophyta
Evalue1.24e-05
Seed ortholog38833.XP_003058967.1
Hectar predicted targeting categoryother localisation
TranscriptId147064
TrackFilteredModels1
ProteinId146742
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|146742gene_12749Tribonema minus UTEX_B_3156 geneContig_105 415966..418446 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|146742Trimin1|146742|gw1.105.63.1Tribonema minus UTEX_B_3156 polypeptideContig_105 415966..418446 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12749_3exon_12749_3Tribonema minus UTEX_B_3156 exonContig_105 415966..416307 -
exon_12749_2exon_12749_2Tribonema minus UTEX_B_3156 exonContig_105 418057..418122 -
exon_12749_1exon_12749_1Tribonema minus UTEX_B_3156 exonContig_105 418201..418446 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12749CDS_12749Tribonema minus UTEX_B_3156 CDSContig_105 418201..418446 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12749 ID=mRNA_12749|Name=jgi.p|Trimin1|146742|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=654bp|location=Sequence derived from alignment at Contig_105:415966..418446- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ACGGCGCTGTGGCTCGCAGCGCAGGCGGGCAGGGTCCCCGTCGTGCAGTA
CCTAGTCGACGAGGGCAGCGCTCTGGAACTGCCAAACTCGCTGGGGCAGA
CGCCCTTGTACGCGGCGTGTGCGGTGGGGCGGACGGAGATGGTAAAGCTG
CTGATATCGCTGGGGGCGGCGGTGGATAAGCCCGCACGGGACGGCACGAC
GCCGCTGTTTGCGGCGGTTGCGAATGGGCACGTGGAGGCTGCACAGCCCG
CAAGGGACGGCACGACGCCGCTGTTTGCGGCAGTCGCTAATGGGCATGTG
GAGGCTGCGCAGGTGGCGCTGGAGAACGCGCCGCGCCTGGACGTGCGCGC
GCGCGACGGCCGCACGCTCCTGAGCGCTGCCGTCCAGTGCGGCCGCGACG
CCATGATGGACGCGCTGCTCGTCTTCAAGGCGGACCTCGACCTCGAGGCG
CGCGACGACGAGGGCCGCACGGCCCTCTACCTGTCGGCCGCGGCCGGTTC
CGCGGGGTGCGCGCGCAAGCTGCTCAACAAGGGGGCGGCGCCAGGGGCGG
CCGCGGCGGATGGGACGACGCCCCTGTGGAGCGCTGCCTACGGGGGGTTC
GACAGGATTGTGGCGATGCTGATGGAGAAGGGGGCAACGGCGGCGCTGGC
GACG
back to top

protein sequence of jgi.p|Trimin1|146742

>Trimin1|146742|gw1.105.63.1 ID=Trimin1|146742|gw1.105.63.1|Name=jgi.p|Trimin1|146742|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=218bp
TALWLAAQAGRVPVVQYLVDEGSALELPNSLGQTPLYAACAVGRTEMVKL
LISLGAAVDKPARDGTTPLFAAVANGHVEAAQPARDGTTPLFAAVANGHV
EAAQVALENAPRLDVRARDGRTLLSAAVQCGRDAMMDALLVFKADLDLEA
RDDEGRTALYLSAAAGSAGCARKLLNKGAAPGAAAADGTTPLWSAAYGGF
DRIVAMLMEKGATAALAT
back to top

mRNA from alignment at Contig_105:415966..418446-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12749 ID=mRNA_12749|Name=jgi.p|Trimin1|146742|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2481bp|location=Sequence derived from alignment at Contig_105:415966..418446- (Tribonema minus UTEX_B_3156 )
ACGGCGCTGTGGCTCGCAGCGCAGGCGGGCAGGGTCCCCGTCGTGCAGTA
CCTAGTCGACGAGGGCAGCGCTCTGGAACTGCCAAACTCGCTGGGGCAGA
CGCCCTTGTACGCGGCGTGTGCGGTGGGGCGGACGGAGATGGTAAAGCTG
CTGATATCGCTGGGGGCGGCGGTGGATAAGCCCGCACGGGACGGCACGAC
GCCGCTGTTTGCGGCGGTTGCGAATGGGCACGTGGAGGCTGCACAGGTGC
AATGAGAACTTCACGTTTGATGAACTTCTCTCTTTTGAGGTGACAGTCAT
TGTACAGTGACTGCAGTGGATGAGCCCGCAAGGGACGGCACGACGCCGCT
GTTTGCGGCAGTCGCTAATGGGCATGTGGAGGCTGCGCAGGTGAGATGAT
AAGGATGATAACTTAAACTATGACAAACTTCACCTTAAATCTTACAGTTG
AAGTAGCTGCCGCAAGGGACGGCACGACACCGCTGTTTGCGGCCGTCACA
AATTGGCATGTGGAGGCTGCGCAGGTGGGGCGAAAACTTCAACTTTGACC
AAAGCTTCAGTGGTTTGCTGCACGCCACGCTTTTGGAGGCTGCTGTGCAA
AATAAATGGCCAAGTGGTGGTGTAACCGGCTTCACACACCGTCGTATGCT
GCTGTGCGGCACTATCCCTCACCCTAACCCTAACGCTAGCTAGATCTTTG
TCCTGTGGCAGTGCTCGCCGTGGGTCACGAAGTCTCTGCAAACATACGCC
ATGAGATTGTGGCTAGCTTGTACACTGTGCCTGTCAAGGGTGGCACGACG
CTGTCACACATTGGCTGCAAACGGCCATGCAGAGGCTGGGGAGGTGCAGT
CTCAACAACAAGAAAACTTACATGACATTGAGTGATCATGACTGTCTAGA
ACAAAGTCCATTTGTCTCCCACCAAAAGGCCAATGCCCCGTGCTTGAGTT
GCCGCAACACGTATCACTTGGTTACAATTTCACAGTGATCTCTATTTGGT
GTGCCAAGTACTCAACATTTGGCGCATTGCCATGTATGCGGCAGTGCAAG
CAGTATGCTGCTGCACAAGCAATACTGCAACATCGGTACACTTAAACGTA
CCATGGCTCTGCAGCAGAGTCATGCAGTCTTCCATCAATGTAACAGCATG
ATCTCGTATGGTTCGCCATGTCAAGTATGCAAACACCGCAAATTGTGTGG
TGCAACTGCTTGCACAAGTCACCTTGAGATGGCGCTAGAGAATGCTTTTT
ATCACCAGGCTGTGTGCTGCGCCGCGGCTGGACGTGCGCTTTTACGCGCG
CACGCACACGCACCGCACAACAATGCCGTCGCAATGCTACGCGAAGTGCC
ACTTGACGCGCTTTCACGCACCCCCTGAAAGTGCACTACAACGTACACTC
GCGCAACACACAGCTTCCCGCAGGTGGCGCTGGAGAACGCGCCACAGAAA
GTGTGCTAAATCACGACTCTCTAGTGCCACTTTGCAGGTGGCGCTGAAAA
CCCAATCGCATGCTCCAAAGTAACACTTGCCGCACGCCCGCACACACACG
TGCGCGGCACTGCAACACAGAGTACAAACTGCTGCTTAAGCAATGCAAGC
GCATGACGCCAGAAACACGCAACGCGCGACTTTTGCAGGTGGCGCTGGAG
AACGAGCCGCGGCTGCCATGCGCACGCTTTCGCGCGCGCGCTCACGCACC
GCACAACACTGTCCCGCTTCAACGTGCCAGTTGACACACTTGCACGCACC
CCCTGAACATGCACTACAACACACACACACACGACTAACGCACCGCTTTT
GCAGGTGGCGCTGGAGAATGCGCCGCGCCTCGACGTGCGCGCGCGCGACG
ACCGCACACACGCGCACGCACATGCGCTACAACAACACACAGTACAAACC
ACTGCCTCACACCTGTGCACGCACTACAAGTTGTCGACAACGCACACTCA
AAACACCATTTTACAGGTGGCGCTGGAGAACGCGCCGCAGCTCGACTTGC
GCGCGCGCGACGGCTGCACCCTCCTGAGCGCCGCCGCCCAGTGCCACGCT
CCAAGAGCCAGTTGACACGCCGTCACGCACCCTCCGAAAATGTACAACTT
ACTTCTATAACGCACACACGCGCAACATGGCTTTTGCAGGTGGCGCTGGA
GAACGCGCCGCGCCTGGACGTGCGCGCGCGCGACGGCCGCACGCTCCTGA
GCGCTGCCGTCCAGTGCGGCCGCGACGCCATGATGGACGCGCTGCTCGTC
TTCAAGGCGGACCTCGACCTCGAGGCGCGCGACGACGAGGGCCGCACGGC
CCTCTACCTGTCGGCCGCGGCCGGTTCCGCGGGGTGCGCGCGCAAGCTGC
TCAACAAGGGGGCGGCGCCAGGGGCGGCCGCGGCGGATGGGACGACGCCC
CTGTGGAGCGCTGCCTACGGGGGGTTCGACAGGATTGTGGCGATGCTGAT
GGAGAAGGGGGCAACGGCGGCGCTGGCGACG
back to top

Coding sequence (CDS) from alignment at Contig_105:415966..418446-

>mRNA_12749 ID=mRNA_12749|Name=jgi.p|Trimin1|146742|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=654bp|location=Sequence derived from alignment at Contig_105:415966..418446- (Tribonema minus UTEX_B_3156 )
ACGGCGCTGTGGCTCGCAGCGCAGGCGGGCAGGGTCCCCGTCGTGCAGTA
CCTAGTCGACGAGGGCAGCGCTCTGGAACTGCCAAACTCGCTGGGGCAGA
CGCCCTTGTACGCGGCGTGTGCGGTGGGGCGGACGGAGATGGTAAAGCTG
CTGATATCGCTGGGGGCGGCGGTGGATAAGCCCGCACGGGACGGCACGAC
GCCGCTGTTTGCGGCGGTTGCGAATGGGCACGTGGAGGCTGCACAGCCCG
CAAGGGACGGCACGACGCCGCTGTTTGCGGCAGTCGCTAATGGGCATGTG
GAGGCTGCGCAGGTGGCGCTGGAGAACGCGCCGCGCCTGGACGTGCGCGC
GCGCGACGGCCGCACGCTCCTGAGCGCTGCCGTCCAGTGCGGCCGCGACG
CCATGATGGACGCGCTGCTCGTCTTCAAGGCGGACCTCGACCTCGAGGCG
CGCGACGACGAGGGCCGCACGGCCCTCTACCTGTCGGCCGCGGCCGGTTC
CGCGGGGTGCGCGCGCAAGCTGCTCAACAAGGGGGCGGCGCCAGGGGCGG
CCGCGGCGGATGGGACGACGCCCCTGTGGAGCGCTGCCTACGGGGGGTTC
GACAGGATTGTGGCGATGCTGATGGAGAAGGGGGCAACGGCGGCGCTGGC
GACG
back to top