mRNA_12748 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|142729
Unique NamemRNA_12748
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|142729 vs. uniprot
Match: A0A835ZK11_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK11_9STRA)

HSP 1 Score: 145 bits (366), Expect = 2.570e-44
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 
Query:    1 IQSNLTTKVLGFRKEDQRVNVYYAACLAHPTRGRTQLIRKHQSMQQLEDIFIKPRTHTGVGYYSNQHQQQ 210
            IQSNLTTKVLGFRKEDQRVNVYYAACLAHPTRGRTQLIRKHQSMQQLEDIFIKPRTHTGVGYYSNQHQQQ
Sbjct:    1 IQSNLTTKVLGFRKEDQRVNVYYAACLAHPTRGRTQLIRKHQSMQQLEDIFIKPRTHTGVGYYSNQHQQQ 70
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BLAST of jgi.p|Trimin1|142729 vs. uniprot
Match: A0A0D2KAA4_9CHLO (Uncharacterized protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2KAA4_9CHLO)

HSP 1 Score: 68.9 bits (167), Expect = 3.580e-12
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 1 
Query:    1 IQSNLTTKVLGFRKEDQRVNVYYAA-----CLAHPTRGRTQLIRKHQSMQQLEDIFIKPRTHTGVGYY 189
            +Q N+ ++V+GF +  +RVNVYY       C+ HP  G+TQL R++Q++  L +IF  PR HTG GYY
Sbjct:   18 VQHNVESRVMGFVRGGERVNVYYTTGTVGTCVNHPRAGKTQLFRRNQTLATLGNIFQDPRVHTGAGYY 85
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BLAST of jgi.p|Trimin1|142729 vs. uniprot
Match: A0A1Z5JL57_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JL57_FISSO)

HSP 1 Score: 63.9 bits (154), Expect = 2.510e-10
Identity = 31/66 (46.97%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:   10 NLTTKVLGFRKEDQRVNVYY-----AACLAHPTRGRTQLIRKHQSMQQLED-IFIKPRTHTGVGYY 189
            NLT++V+ FR++  R+NVYY     + CL HP +G+TQL R++    +L D +F  PR HTG GYY
Sbjct:   32 NLTSRVISFRQQTTRINVYYTTGTVSTCLNHPVQGKTQLFRRNIVTTELLDALFKNPRKHTGEGYY 97
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|142729 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835ZK11_9STRA2.570e-44100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A0D2KAA4_9CHLO3.580e-1245.59Uncharacterized protein n=1 Tax=Monoraphidium negl... [more]
A0A1Z5JL57_FISSO2.510e-1046.97Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_105contigContig_105:413106..413315 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|142729|gw1.105.40.1
Max annot lvl2759|Eukaryota
EggNOG OGs2EKPV@1|root,2SQIQ@2759|Eukaryota
Evalue2.29e-07
Seed ortholog159749.K0TB85
Hectar predicted targeting categoryother localisation
TranscriptId143051
TrackFilteredModels1
ProteinId142729
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|142729gene_12748Tribonema minus UTEX_B_3156 geneContig_105 413106..413315 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12748_1exon_12748_1Tribonema minus UTEX_B_3156 exonContig_105 413106..413315 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12748CDS_12748Tribonema minus UTEX_B_3156 CDSContig_105 413106..413315 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|142729Trimin1|142729|gw1.105.40.1Tribonema minus UTEX_B_3156 polypeptideContig_105 413106..413315 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12748 ID=mRNA_12748|Name=jgi.p|Trimin1|142729|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=210bp|location=Sequence derived from alignment at Contig_105:413106..413315+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATCCAGAGCAACCTGACCACCAAGGTGCTGGGATTCCGAAAGGAAGATCA
GAGGGTCAACGTGTACTACGCTGCCTGCCTAGCCCACCCCACGCGAGGGC
GTACGCAGCTGATAAGGAAGCACCAGAGCATGCAGCAGCTGGAAGACATC
TTCATCAAGCCACGGACACACACGGGGGTGGGATACTACAGCAACCAGCA
CCAGCAACAA
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protein sequence of jgi.p|Trimin1|142729

>Trimin1|142729|gw1.105.40.1 ID=Trimin1|142729|gw1.105.40.1|Name=jgi.p|Trimin1|142729|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=70bp
IQSNLTTKVLGFRKEDQRVNVYYAACLAHPTRGRTQLIRKHQSMQQLEDI
FIKPRTHTGVGYYSNQHQQQ
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mRNA from alignment at Contig_105:413106..413315+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12748 ID=mRNA_12748|Name=jgi.p|Trimin1|142729|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=210bp|location=Sequence derived from alignment at Contig_105:413106..413315+ (Tribonema minus UTEX_B_3156 )
ATCCAGAGCAACCTGACCACCAAGGTGCTGGGATTCCGAAAGGAAGATCA
GAGGGTCAACGTGTACTACGCTGCCTGCCTAGCCCACCCCACGCGAGGGC
GTACGCAGCTGATAAGGAAGCACCAGAGCATGCAGCAGCTGGAAGACATC
TTCATCAAGCCACGGACACACACGGGGGTGGGATACTACAGCAACCAGCA
CCAGCAACAA
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Coding sequence (CDS) from alignment at Contig_105:413106..413315+

>mRNA_12748 ID=mRNA_12748|Name=jgi.p|Trimin1|142729|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=210bp|location=Sequence derived from alignment at Contig_105:413106..413315+ (Tribonema minus UTEX_B_3156 )
ATCCAGAGCAACCTGACCACCAAGGTGCTGGGATTCCGAAAGGAAGATCA
GAGGGTCAACGTGTACTACGCTGCCTGCCTAGCCCACCCCACGCGAGGGC
GTACGCAGCTGATAAGGAAGCACCAGAGCATGCAGCAGCTGGAAGACATC
TTCATCAAGCCACGGACACACACGGGGGTGGGATACTACAGCAACCAGCA
CCAGCAACAA
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