mRNA_12743 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|131483 vs. uniprot
Match: A0A835ZHH4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHH4_9STRA) HSP 1 Score: 595 bits (1533), Expect = 9.010e-215 Identity = 299/299 (100.00%), Postives = 299/299 (100.00%), Query Frame = 1 Query: 1 MQFVHEVTGCNFAPMKAVLQSLDKAFQPSELYSTVTESKFVDESQRRSRVHTFTDKPELFAHAQTLLARFPLDPLLDYFVVPNDAMHIVYVADGYFRRHRDYLAITSNAVTEYTLICCLTAPEKGGQTALYINDHTDTYVSAASATAGGALLFRKDIAHEGLTVEAGEKHIIMFNVCAVRRASDARGILLVTFPHTEASALPLQRAAEAQSYVLPIAAVMNSRFGDNKLAGFCRWQKATTNGGDALAEASENSSGLPPIMEYSCTNASYEDFGTIYRVMSGAYVTAEEVTRNRDLLDFY 897 MQFVHEVTGCNFAPMKAVLQSLDKAFQPSELYSTVTESKFVDESQRRSRVHTFTDKPELFAHAQTLLARFPLDPLLDYFVVPNDAMHIVYVADGYFRRHRDYLAITSNAVTEYTLICCLTAPEKGGQTALYINDHTDTYVSAASATAGGALLFRKDIAHEGLTVEAGEKHIIMFNVCAVRRASDARGILLVTFPHTEASALPLQRAAEAQSYVLPIAAVMNSRFGDNKLAGFCRWQKATTNGGDALAEASENSSGLPPIMEYSCTNASYEDFGTIYRVMSGAYVTAEEVTRNRDLLDFY Sbjct: 1 MQFVHEVTGCNFAPMKAVLQSLDKAFQPSELYSTVTESKFVDESQRRSRVHTFTDKPELFAHAQTLLARFPLDPLLDYFVVPNDAMHIVYVADGYFRRHRDYLAITSNAVTEYTLICCLTAPEKGGQTALYINDHTDTYVSAASATAGGALLFRKDIAHEGLTVEAGEKHIIMFNVCAVRRASDARGILLVTFPHTEASALPLQRAAEAQSYVLPIAAVMNSRFGDNKLAGFCRWQKATTNGGDALAEASENSSGLPPIMEYSCTNASYEDFGTIYRVMSGAYVTAEEVTRNRDLLDFY 299
BLAST of jgi.p|Trimin1|131483 vs. uniprot
Match: A0A836CA15_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA15_9STRA) HSP 1 Score: 422 bits (1085), Expect = 5.170e-145 Identity = 222/300 (74.00%), Postives = 239/300 (79.67%), Query Frame = 1 Query: 1 MQFVHEVTGCNFAPMKAVLQSLDKAFQPSELYSTVTESKFVDESQRRSRVHTFTDKPELFAHAQTLLARFPLDPLLDYFVVPNDAMHIVYVADGYFRRHRDYLAITSNAVTEYTLICCLTAPEKGGQTALYINDHTDTYVSAASATAGGALLFRKDIAHEGLTVEAGEKHIIMFNVCAVRRASDARGILLVTFPHTEA-SALPLQRAAEAQSYVLPIAAVMNSRFGDNKLAGFCRWQKATTNGGDALAEASENSSGLPPIMEYSCTNASYEDFGTIYRVMSGAYVTAEEVTRNRDLLDFY 897 MQFVHEVT C+F+PM A+LQS DKAFQPSELYSTVT SKFVDESQRRSRV TFTD+P+LFAHAQTLLARFPL+PLLDYFVVPNDAMHIVY A GYFRRHRDYLAITSNAVTEYTLICCLTAP+KGGQTAL+INDHT+ YVS AS TAGGALLFRKDIAHEGLTVEAGEKH++MFNVCA RRASDARGILLVTFP E A E L + M +A C + GG A A LPPI+EY C NASYEDFGTIYRVM+GAYVTA+EVTRNRDLLDFY Sbjct: 1 MQFVHEVTNCDFSPMTAILQSSDKAFQPSELYSTVTGSKFVDESQRRSRVRTFTDEPQLFAHAQTLLARFPLNPLLDYFVVPNDAMHIVYAAGGYFRRHRDYLAITSNAVTEYTLICCLTAPDKGGQTALHINDHTEMYVSKASTTAGGALLFRKDIAHEGLTVEAGEKHVLMFNVCAARRASDARGILLVTFPQDEVRKARGRGCGGEGGGRCLGVLVAMG-----RCVATVCVAASDSAQGGGAAA--------LPPIVEYRCANASYEDFGTIYRVMTGAYVTADEVTRNRDLLDFY 287
BLAST of jgi.p|Trimin1|131483 vs. uniprot
Match: R1E3U0_EMIHU (P4Hc domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E3U0_EMIHU) HSP 1 Score: 169 bits (427), Expect = 5.030e-44 Identity = 108/310 (34.84%), Postives = 161/310 (51.94%), Query Frame = 1 Query: 1 MQFVHEVTGCNFAPMKAVLQSLDKAFQPSELYSTVTESKFVDESQRRSRVHTFTDKPELFAHAQTLLARFPL-DPLLDYFVVPNDAMHIVYVADGYFRRHRDYLAITSNAVTEYTLICCLTAPEK---GGQTALYINDHTDTYVSAASATAGGALLFRKDIAHEGLTVEAGEKHIIMFNVCAVRRASDARGILLVTFPHTEASALPLQ-------RAAEAQSYVLPIAAVMNSRFGDNKLAGFCRWQKATTNGGDALAEASENSSGLPPIMEYSCTNASYEDFGTIYRVMSGAYVTAEEVTRNRDLLDFY 897 MQ + + + + L + FQ S LY V K VD +R S + TD+ LF A+ ++ + D D+ +V ND HI Y G+F++H DYL++TSN V EYTL+ C+T GG+T ++ H + + T G AL+FRKD+ HEG +EAGEKHI+ FN+ A+R+ S +LLVTFP E +A LQ A + SYVL +A S LA W GGD I+ +SC ++E FGT++RV++ ++++A E+ N+ ++DFY Sbjct: 1 MQSTRALKNLDVSRISTFLAECKQPFQTSHLYDAVENKKLVDTERRLSEFRSITDE-RLFDLAEDIVKQLSAQDESADFTLVRNDLTHIRYHTGGFFKKHEDYLSVTSNLVEEYTLLLCVTPAGMHTVGGETVIF--GHIGSQAYKETTTRGDALVFRKDVMHEGRIIEAGEKHILSFNLWAMRKHSGQ--VLLVTFPPAEEAASKLQGVEALHEAANDKSSYVLAVADAKGSEM----LAAHIEWVSGQAEGGD--------------IIRHSCKLFTFEQFGTLFRVLTQSHISATELAANKPVIDFY 287
BLAST of jgi.p|Trimin1|131483 vs. uniprot
Match: A0A0M0K706_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K706_9EUKA) HSP 1 Score: 159 bits (403), Expect = 2.840e-40 Identity = 108/302 (35.76%), Postives = 154/302 (50.99%), Query Frame = 1 Query: 19 VTGCNFAPMKAVLQSLDKAFQPSELYSTVTESKFVDESQRRSRVHTFTDKPELFAHAQTLLARFPLDPLLDYFVVPNDAMHIVYVADGYFRRHRDYLAITSNAVTEYTLICCLTAPEKGGQT---ALYINDHTDTYVSAASATAGGALLFRKDIAHEGLTVEAGEKHIIMFNVCAVRRASDARGILLVTFPHT------EASALPLQRAAEAQSYVLPIAAVMNSRFGDNKLAGFCRWQKATTNGGDALAEASENSSGLPPIMEYSCTNASYEDFGTIYRVMSGAYVTAEEVTRNRDLLDFY 897 V G + + +L + F+ S LYS ++KFVD+S R S+ D A A L D DY +V +D IVY A G+F+RH D+L++ +N V E TL+ C+T PE T A I+ + ++ AA+ T G ALLFRKD+ HEG V GEKHI+ NV A R+ S LL+TFPH ++ L AA A++Y M++ LAG W A A E S P ++ Y C +ASY FGTI+R++ +V A E+ +++ LDF+ Sbjct: 397 VQGLDCTDIDELLADCQQPFEDSMLYSAGADAKFVDKSTRLSKYRAIVDARLFDATAAMLSQISAADAEYDYTLVRSDVTQIVYEAGGFFKRHADFLSLVTNFVEEQTLLVCITPPEAALNTLGGATTIHAYGKSFDFAATTTPGHALLFRKDLDHEGQVVTGGEKHILSVNVWAHRKKSGQT--LLITFPHETEECPGQSGGAALLAAANAKAYA------MSADDARGMLAGKVEW---------ANRAADEAGSRRPSVITYECADASYTQFGTIFRILCRMHVDASELVQHKATLDFF 681
BLAST of jgi.p|Trimin1|131483 vs. uniprot
Match: A0A0G4G062_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4G062_9ALVE) HSP 1 Score: 159 bits (401), Expect = 3.010e-40 Identity = 105/319 (32.92%), Postives = 170/319 (53.29%), Query Frame = 1 Query: 1 MQFVHEVTGCNFAPMKAVLQSLDKAFQPSELYSTVTESKFVDESQRRSRVHTFTDKPELFAHAQTLLARFPL-DPLLDYFVVPNDAMHIVYVADGYFRRHRDYLAITSNAVTEYTLICCLTAPEK------GGQTALYINDHTDTYVSAASATAGGALLFRKDIAHEGLTVEAGEKHIIMFNVCAVRRASDARGILLVTFPHTEASALPLQRAAEA-------------QSYVLPIAAVMNSRFGDNKLAGFCRWQKATTNGGDALAEASENSSGLPPIMEYSCTNASYEDFGTIYRVMSGAYVTAEEVTRNRDLLDFY 897 M+FV E + + AP+ L K F+ S+LYS+ TESK+VDES R+S+ F ++ +LF L+ R D + + ND HIVY G+F+ HRD+L++ SN + EYTLI C+T P+K GG+T + IN T +++ + G +LFRKD+ HEG +E GEKHI+ NV R+ S+ +L V FP A ++ E SYV ++ + + F ++ L +++ A+ P ++E++C +A++E+FGT+ R++ YV+ EE+ + DL+ F+ Sbjct: 1 MKFVKEFSDFDIAPILQFLSGNTKPFEKSQLYSSATESKYVDESLRQSKFRIFEEE-KLFDLLVPLVERLSNEDEECTFAIRRNDVTHIVYEEGGFFQTHRDFLSVKSNLIEEYTLILCVTPPDKAQAGVQGGETKICINP-TTSHLCKGTTVPGSGVLFRKDLRHEGSLLEKGEKHILTLNVWGTRKTSER--LLYVKFPKQAADPGVAEKGQEKAGKETLEAFGKEEDSYVFKVSDL--ALFPESFLVAKIAFEEN---------RAAMEHRDPPAVIEWTCDHATFEEFGTVARILRRCYVSPEELEKRIDLIRFH 304
BLAST of jgi.p|Trimin1|131483 vs. uniprot
Match: A0A0G4HCZ8_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HCZ8_9ALVE) HSP 1 Score: 115 bits (287), Expect = 6.250e-25 Identity = 74/198 (37.37%), Postives = 103/198 (52.02%), Query Frame = 1 Query: 1 MQFVHEVTGCNFAPMKAVLQSLDKAFQPSELYSTVTESKFVDESQRRSRVHTFTDKPELFAHAQTLLARFP-LDPLLDYFVVPNDAMHIVYVADGYFRRHRDYLAITSNAVTEYTLICCLTAPEKGGQTALYINDHTDTYVSAASATAGGALLFRKDIAHEGLTVEAGEKHIIMFNVCAVRRASDARGILLVTFPHTE 591 M+FV E + + + + L+S K F+ S+LYS TESKFVDE+ R+S+ D PELFA + L+ R DP + + ND HIVY + L KGG+T + +N T ++V ++ G +LFRKD+ HEGL VE+GEKHI+ N+ AVR+ S IL V FP E Sbjct: 69 MEFVKEFSSFDISSVLDFLRSTSKPFEKSQLYSATTESKFVDETLRQSKFRLL-DAPELFALLEALVLRLSDEDPECSFAIRKNDVTHIVYEPE-------------------------LATETKGGETKIQVNPST-SHVCKSTTVPGSGVLFRKDLGHEGLLVESGEKHILTLNLWAVRKKSQGDRILFVRFPSQE 239 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|131483 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_12743 ID=mRNA_12743|Name=jgi.p|Trimin1|131483|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=897bp|location=Sequence derived from alignment at Contig_105:316054..317761+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCAGTTCGTCCACGAGGTCACGGGTTGCAACTTCGCTCCTATGAAGGCback to top protein sequence of jgi.p|Trimin1|131483 >Trimin1|131483|gw1.105.7.1 ID=Trimin1|131483|gw1.105.7.1|Name=jgi.p|Trimin1|131483|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=299bp MQFVHEVTGCNFAPMKAVLQSLDKAFQPSELYSTVTESKFVDESQRRSRVback to top mRNA from alignment at Contig_105:316054..317761+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_12743 ID=mRNA_12743|Name=jgi.p|Trimin1|131483|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1708bp|location=Sequence derived from alignment at Contig_105:316054..317761+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_105:316054..317761+ >mRNA_12743 ID=mRNA_12743|Name=jgi.p|Trimin1|131483|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=897bp|location=Sequence derived from alignment at Contig_105:316054..317761+ (Tribonema minus UTEX_B_3156 )back to top |