mRNA_1273 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|145702
Unique NamemRNA_1273
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|145702 vs. uniprot
Match: A0A835Z6B4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6B4_9STRA)

HSP 1 Score: 360 bits (923), Expect = 6.500e-126
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 1 
Query:    1 DAEGDDYGWFSEDAYDSESSETSMEAIQREHRNSVSVKCASNCTVEFRAHNPAFILSTKCFDSSTQCFAWGIGGFRIVRIASGSKHAEYQVLASYGDRTWTRWIRSSAFGRFAKACCEQRGWAASTKAWKQIQTTQRLFRCLDVNYLLNKCHMLENFLRLALFDAGDAQPLLELV 525
            DAEGDDYGWFSEDAYDSESSETSMEAIQREHRNSVSVKCASNCTVEFRAHNPAFILSTKCFDSSTQCFAWGIGGFRIVRIASGSKHAEYQVLASYGDRTWTRWIRSSAFGRFAKACCEQRGWAASTKAWKQIQTTQRLFRCLDVNYLLNKCHMLENFLRLALFDAGDAQPLLELV
Sbjct:    1 DAEGDDYGWFSEDAYDSESSETSMEAIQREHRNSVSVKCASNCTVEFRAHNPAFILSTKCFDSSTQCFAWGIGGFRIVRIASGSKHAEYQVLASYGDRTWTRWIRSSAFGRFAKACCEQRGWAASTKAWKQIQTTQRLFRCLDVNYLLNKCHMLENFLRLALFDAGDAQPLLELV 175
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BLAST of jgi.p|Trimin1|145702 vs. uniprot
Match: A0A835YXN3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXN3_9STRA)

HSP 1 Score: 129 bits (323), Expect = 3.850e-34
Identity = 76/173 (43.93%), Postives = 100/173 (57.80%), Query Frame = 1 
Query:   10 GDDYGWFSEDAYDSESSETSMEAIQREHRNSVSVKCASNCTVEFRAHNPAFILSTKCFDSSTQCFAWGIGGFRIVRIASGSKHAEYQVLASYGDRTWTRWIRSSAFG-RFAKACCEQRGWAASTKAWKQIQTTQRLFRCLDVNYLLNKCHMLENFLRLALFDAGDAQPLLELV 525
            G DYGWFS+     E  +   EAIQR  R     +   +C   +RA  P F++STKCF   T  FAWGIGGFRIVR ++GS+HAE+QVLA YGD +W  WIR + F  + A+   +   W  +   W  ++  Q  +RCL+  YL  KC +LE +L   LFDA +   LLE V
Sbjct:   48 GGDYGWFSDV---DECLDYGAEAIQR--RQKEIPRQRDDCV--YRADRPGFLVSTKCFGGKT--FAWGIGGFRIVRGSAGSRHAEFQVLARYGDTSWAAWIRWTEFEQKLAEGPAKH--WHRAACCWCDVKANQPWYRCLNTEYLRRKCLLLEGYLSQVLFDAPEVNQLLEFV 209
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BLAST of jgi.p|Trimin1|145702 vs. uniprot
Match: F0XW23_AURAN (Expressed protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XW23_AURAN)

HSP 1 Score: 59.3 bits (142), Expect = 3.360e-7
Identity = 37/99 (37.37%), Postives = 55/99 (55.56%), Query Frame = 1 
Query:  223 FRIVRIASG-SKHAEYQVLASYGDRTWTRWIRSSAFGRFAKACCEQRGWAASTK----AWKQIQTTQRLFRCLDVNYLLNKCHMLENFLRLALFDAGDA 504
            F+IVR  SG    AEY V+A  G  T+  W R S F    +A  ++     + +    +W+ ++  QRLFRCLD +YL  KC +LE FL  A+F++  +
Sbjct:  268 FQIVRERSGVDLRAEYLVVARLGGVTFGIWRRHSHFLDLQQAIAKEPDADVTYRNTLWSWRCLKRRQRLFRCLDKDYLAVKCFLLERFLHDAVFESSSS 366
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BLAST of jgi.p|Trimin1|145702 vs. uniprot
Match: A0A835ZDH9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDH9_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 8.340e-5
Identity = 34/95 (35.79%), Postives = 53/95 (55.79%), Query Frame = 1 
Query:  223 FRIVRIASGSK-HAEYQVLASYGDRTWTRWIRSSAFGRFA---KACCEQRGWAASTKAWKQIQTTQRLFRCLDVNYLLNKCHMLENFLRLALFDA 495
            F+IV+  SGS  HAEY ++   G  T   W R   F   A   +   +++ +  +  +W  ++  QRLFRCLD +YL+ KC +LE FL   +F++
Sbjct:  291 FQIVQ--SGSDVHAEYLIVVGLGAVTLGVWRRFREFKNLANKLEGSNKRQQFHNALCSWHCLRARQRLFRCLDKDYLILKCFLLERFLHDLVFES 383
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|145702 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835Z6B4_9STRA6.500e-126100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YXN3_9STRA3.850e-3443.93Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
F0XW23_AURAN3.360e-737.37Expressed protein n=1 Tax=Aureococcus anophageffer... [more]
A0A835ZDH9_9STRA8.340e-535.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:324513..325037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|145702|gw1.18.225.1
Max annot lvl2759|Eukaryota
EggNOG OGs2C38U@1|root,2RHZN@2759|Eukaryota
Evalue4.41e-15
Seed ortholog2880.D7FHG1
Hectar predicted targeting categoryother localisation
TranscriptId146024
TrackFilteredModels1
ProteinId145702
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|145702gene_1273Tribonema minus UTEX_B_3156 geneContig_18 324513..325037 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1273_1exon_1273_1Tribonema minus UTEX_B_3156 exonContig_18 324513..325037 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1273CDS_1273Tribonema minus UTEX_B_3156 CDSContig_18 324513..325037 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|145702Trimin1|145702|gw1.18.225.1Tribonema minus UTEX_B_3156 polypeptideContig_18 324513..325037 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1273 ID=mRNA_1273|Name=jgi.p|Trimin1|145702|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=525bp|location=Sequence derived from alignment at Contig_18:324513..325037+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GACGCAGAAGGCGATGACTACGGCTGGTTTTCCGAGGATGCATACGACAG
CGAGTCCTCCGAGACGAGCATGGAGGCGATACAGCGGGAGCACAGGAACA
GCGTCTCGGTCAAGTGTGCCTCCAACTGCACAGTGGAGTTCCGGGCACAC
AACCCCGCCTTCATCCTCTCCACCAAGTGCTTCGACTCCAGCACGCAGTG
CTTCGCCTGGGGCATCGGCGGCTTCCGCATCGTCCGCATAGCCAGCGGCA
GCAAGCACGCCGAGTACCAGGTGCTGGCCTCCTATGGGGACCGCACTTGG
ACGCGGTGGATCAGGTCGAGCGCCTTCGGCCGGTTCGCCAAGGCCTGCTG
CGAACAGCGGGGATGGGCGGCCAGCACCAAGGCCTGGAAGCAGATCCAGA
CAACCCAGCGGCTCTTCCGGTGTCTCGACGTCAACTACCTCCTCAACAAG
TGCCACATGCTCGAGAACTTCCTTCGGCTCGCCCTGTTCGACGCGGGAGA
CGCACAGCCCCTTCTGGAGCTGGTC
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protein sequence of jgi.p|Trimin1|145702

>Trimin1|145702|gw1.18.225.1 ID=Trimin1|145702|gw1.18.225.1|Name=jgi.p|Trimin1|145702|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=175bp
DAEGDDYGWFSEDAYDSESSETSMEAIQREHRNSVSVKCASNCTVEFRAH
NPAFILSTKCFDSSTQCFAWGIGGFRIVRIASGSKHAEYQVLASYGDRTW
TRWIRSSAFGRFAKACCEQRGWAASTKAWKQIQTTQRLFRCLDVNYLLNK
CHMLENFLRLALFDAGDAQPLLELV
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mRNA from alignment at Contig_18:324513..325037+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1273 ID=mRNA_1273|Name=jgi.p|Trimin1|145702|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=525bp|location=Sequence derived from alignment at Contig_18:324513..325037+ (Tribonema minus UTEX_B_3156 )
GACGCAGAAGGCGATGACTACGGCTGGTTTTCCGAGGATGCATACGACAG
CGAGTCCTCCGAGACGAGCATGGAGGCGATACAGCGGGAGCACAGGAACA
GCGTCTCGGTCAAGTGTGCCTCCAACTGCACAGTGGAGTTCCGGGCACAC
AACCCCGCCTTCATCCTCTCCACCAAGTGCTTCGACTCCAGCACGCAGTG
CTTCGCCTGGGGCATCGGCGGCTTCCGCATCGTCCGCATAGCCAGCGGCA
GCAAGCACGCCGAGTACCAGGTGCTGGCCTCCTATGGGGACCGCACTTGG
ACGCGGTGGATCAGGTCGAGCGCCTTCGGCCGGTTCGCCAAGGCCTGCTG
CGAACAGCGGGGATGGGCGGCCAGCACCAAGGCCTGGAAGCAGATCCAGA
CAACCCAGCGGCTCTTCCGGTGTCTCGACGTCAACTACCTCCTCAACAAG
TGCCACATGCTCGAGAACTTCCTTCGGCTCGCCCTGTTCGACGCGGGAGA
CGCACAGCCCCTTCTGGAGCTGGTC
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Coding sequence (CDS) from alignment at Contig_18:324513..325037+

>mRNA_1273 ID=mRNA_1273|Name=jgi.p|Trimin1|145702|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=525bp|location=Sequence derived from alignment at Contig_18:324513..325037+ (Tribonema minus UTEX_B_3156 )
GACGCAGAAGGCGATGACTACGGCTGGTTTTCCGAGGATGCATACGACAG
CGAGTCCTCCGAGACGAGCATGGAGGCGATACAGCGGGAGCACAGGAACA
GCGTCTCGGTCAAGTGTGCCTCCAACTGCACAGTGGAGTTCCGGGCACAC
AACCCCGCCTTCATCCTCTCCACCAAGTGCTTCGACTCCAGCACGCAGTG
CTTCGCCTGGGGCATCGGCGGCTTCCGCATCGTCCGCATAGCCAGCGGCA
GCAAGCACGCCGAGTACCAGGTGCTGGCCTCCTATGGGGACCGCACTTGG
ACGCGGTGGATCAGGTCGAGCGCCTTCGGCCGGTTCGCCAAGGCCTGCTG
CGAACAGCGGGGATGGGCGGCCAGCACCAAGGCCTGGAAGCAGATCCAGA
CAACCCAGCGGCTCTTCCGGTGTCTCGACGTCAACTACCTCCTCAACAAG
TGCCACATGCTCGAGAACTTCCTTCGGCTCGCCCTGTTCGACGCGGGAGA
CGCACAGCCCCTTCTGGAGCTGGTC
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