mRNA_12737 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|173668 vs. uniprot
Match: A0A836CP06_9STRA (Batten's disease protein Cln3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP06_9STRA) HSP 1 Score: 277 bits (708), Expect = 2.200e-94 Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 Query: 1 MCTQVAGAKEINSGGVGLVFLCDVAPGFFVKLSAPYWFHLVPHSTRVIACGVLMVCAFSLVGCGTTLGAQLAGVSLSSTQSALGETTFLSLAARYDSRWALTMWSSGTGFAGVFGYVTYVFCHLFGETQSVALSLW 408 MCTQVAGAKEINSGGVGLVFLCDVAPGFFVKLSAPYWFHLVPHSTRVIACGVLMVCAFSLVGCGTTLGAQLAGVSLSSTQSALGETTFLSLAARYDSRWALTMWSSGTGFAGVFGYVTYVFCHLFGETQSVALSLW Sbjct: 1 MCTQVAGAKEINSGGVGLVFLCDVAPGFFVKLSAPYWFHLVPHSTRVIACGVLMVCAFSLVGCGTTLGAQLAGVSLSSTQSALGETTFLSLAARYDSRWALTMWSSGTGFAGVFGYVTYVFCHLFGETQSVALSLW 136
BLAST of jgi.p|Trimin1|173668 vs. uniprot
Match: W7TQX4_9STRA (Cln3like protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQX4_9STRA) HSP 1 Score: 135 bits (339), Expect = 8.330e-35 Identity = 74/137 (54.01%), Postives = 84/137 (61.31%), Query Frame = 1 Query: 10 QVAGAKEINSGGVGLVFLCDVAPGFFVKLSAPYWFHLVPHSTRVIACGVLMVCAFSLVGCGTTLGAQLAGVSLSSTQSALGETTFLSLAARYDSRWALTMWSSGTGFAGVFGYVTYVFCHL-----FGETQSVALSL 405 +AGAKEIN+GGVGLVFL DVAP F VKLSAPYWFH V +S R CG LM + V G TL QL GV S Q+ +GE + L L A+Y +T WSSGTGFAG+ GY VF HL F T AL L Sbjct: 41 MLAGAKEINAGGVGLVFLADVAPTFLVKLSAPYWFHHVSYSLRASLCGFLMAASLLTVALGRTLAVQLTGVGFCSLQAGIGEASMLGLTAQYHGPSTITAWSSGTGFAGILGYAWVVFFHLLLHMSFPATLIAALLL 177
BLAST of jgi.p|Trimin1|173668 vs. uniprot
Match: A0A2P6VN99_9CHLO (Battenin n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VN99_9CHLO) HSP 1 Score: 122 bits (307), Expect = 2.150e-30 Identity = 63/132 (47.73%), Postives = 82/132 (62.12%), Query Frame = 1 Query: 10 QVAGAKEINSGGVGLVFLCDVAPGFFVKLSAPYWFHLVPHSTRVIACGVLMVCAFSLVGCGTTLGAQLAGVSLSSTQSALGETTFLSLAARYDSRWALTMWSSGTGFAGVFGYVTYVFCHLFGETQSVALSL 405 +AGA E+++ VGLV+LC VAP K SAPYWFHLV +STRV +LM C+++ V + G QL GV +S Q LGE + L++ + Y R A++MWSSGTGFAGVFGY H+ G A L Sbjct: 28 MLAGANEVSAAAVGLVYLCAVAPAMLCKASAPYWFHLVRYSTRVHIVALLMSCSYTTVALSSARGWQLLGVVFASLQGGLGEASCLAMTSYYSGRPAISMWSSGTGFAGVFGYAWVALLHMLGGLSFRATLL 159
BLAST of jgi.p|Trimin1|173668 vs. uniprot
Match: A0A6H5JLK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLK7_9PHAE) HSP 1 Score: 121 bits (304), Expect = 9.180e-30 Identity = 63/112 (56.25%), Postives = 80/112 (71.43%), Query Frame = 1 Query: 10 QVAGAKEINSGGVGLVFLCDVAPGFFVKLSAPYWFHLVPHSTRVIACGVLMVCAFSLVGCGTTLGAQLAGVSLSSTQSALGETTFLSLAARYDSRWALTMWSSGTGFAGVFG 345 +A AKEI VG+VF DVAP +K++APYWFHLVP+S RV AC +L+V + VG G + QL GV SS Q+ LGE++FL+LA+ YD+ ALT WSSGTGFAG+FG Sbjct: 80 MMAVAKEIAPDAVGVVFFADVAPTMVIKVTAPYWFHLVPYSARVWACTMLLVLSLVTVGYGESTRVQLLGVCFSSLQAGLGESSFLALASFYDTPRALTAWSSGTGFAGIFG 191
BLAST of jgi.p|Trimin1|173668 vs. uniprot
Match: A0A7S0XR50_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chrysocystis fragilis TaxID=1411660 RepID=A0A7S0XR50_9STRA) HSP 1 Score: 116 bits (290), Expect = 3.700e-29 Identity = 68/137 (49.64%), Postives = 92/137 (67.15%), Query Frame = 1 Query: 10 QVAGAKEINSGGVGLVFLCDVAPGFFVKLSAPYWFHLVPHSTRVIACGVLMVCAFSLVGCGTTLGAQLAGVSLSSTQSALGETTFLSLAARYDSRWA--LTMWSSGTGFAGVFGYVTYV-FCHLFGE--TQSVALSL 405 +A AK I +GGV LV+L + PG VK S+P+WF +V + TR+ M +F+LVG G++L AQLAGV+L S QSA+GE + L+L++RY R A + WSSGTGFAGVFGY V F G+ TQ+VAL++ Sbjct: 34 MIASAKSIANGGVALVYLAGIGPGVCVKSSSPFWFDMVGYRTRLGLATSCMAASFALVGFGSSLYAQLAGVALCSAQSAMGEASLLALSSRYPRRGADAVAAWSSGTGFAGVFGYAWVVAFGATLGDIGTQAVALAV 170
BLAST of jgi.p|Trimin1|173668 vs. uniprot
Match: A0A5J4XD34_9CHLO (Golgi integral membrane protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XD34_9CHLO) HSP 1 Score: 119 bits (298), Expect = 5.700e-29 Identity = 64/133 (48.12%), Postives = 83/133 (62.41%), Query Frame = 1 Query: 10 QVAGAKEINSGGVGLVFLCDVAPGFFVKLSAPYWFHLVPHSTRVIACGVLMVCAFSLVGCGTTLGAQLAGVSLSSTQSALGETTFLSLAARYDSRWALTMWSSGTGFAGVFGYVTYVFCHLF-GETQSVALSL 405 +AGA +I+SG VGLV+ C V P VKLSAPYWFHL+ + R+ V+M ++ V G + QL GV+ ++ Q LGE + L+L + YDSR ALT+WSSGTGFAGV GY HL+ G T L L Sbjct: 24 MIAGANDISSGAVGLVYFCAVFPALLVKLSAPYWFHLISYDVRMTVVAVMMTGSYLTVAYGRHMSWQLLGVTFAAFQGGLGEASTLALCSLYDSRRALTLWSSGTGFAGVAGYTWVAVLHLWLGFTFRTTLLL 156
BLAST of jgi.p|Trimin1|173668 vs. uniprot
Match: A0A7S1JHF2_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1JHF2_9EUGL) HSP 1 Score: 115 bits (289), Expect = 5.080e-28 Identity = 64/125 (51.20%), Postives = 83/125 (66.40%), Query Frame = 1 Query: 10 QVAGAKEINSGGVGLVFLCDVAPGFFVKLSAPYWFHLVPHSTRVIACGVLMVCAFSLVGCGT-TLGAQLA--GVSLSSTQSALGETTFLSLAARYDSRWALTMWSSGTGFAGVFGYVTYVFCHLF 375 +AGAK+I VGLV++C+V PGF +KL+ PYWFH V + RV +LM +F +V G T A L+ G+ S Q +LGE +F++L+A YDSR ALT WSSGTGFAGVFGY+ F LF Sbjct: 26 MIAGAKDILPSAVGLVYVCNVLPGFAIKLTGPYWFHYVRYKHRVYCASLLMGLSFLIVALGQITKNAALSLFGILFCSAQGSLGEASFVALSAFYDSRKALTAWSSGTGFAGVFGYLWVSFFTLF 150
BLAST of jgi.p|Trimin1|173668 vs. uniprot
Match: A0A2P6TP97_CHLSO (Batten s disease Cln3 isoform B n=2 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TP97_CHLSO) HSP 1 Score: 116 bits (290), Expect = 8.170e-28 Identity = 61/132 (46.21%), Postives = 80/132 (60.61%), Query Frame = 1 Query: 10 QVAGAKEINSGGVGLVFLCDVAPGFFVKLSAPYWFHLVPHSTRVIACGVLMVCAFSLVGCGTTLGAQLAGVSLSSTQSALGETTFLSLAARYDSRWALTMWSSGTGFAGVFGYVTYVFCHLFGETQSVALSL 405 +AGA +I++ VGLV+L V P K S PYWFHLV + TR+ A +LM +++ V ++ G QL GV L+S QS LGE + L+L + Y R A+TMWSSGTGFAGVFGY + H A L Sbjct: 32 MLAGANQISAAAVGLVYLAAVGPSLLCKASVPYWFHLVRYRTRMQAVALLMTASYTTVALSSSRGWQLLGVVLASLQSGLGEASCLALTSHYRGRAAITMWSSGTGFAGVFGYAWVLLLHFLAGLSFTATLL 163
BLAST of jgi.p|Trimin1|173668 vs. uniprot
Match: A0A383VZS1_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VZS1_TETOB) HSP 1 Score: 115 bits (289), Expect = 1.290e-27 Identity = 59/120 (49.17%), Postives = 75/120 (62.50%), Query Frame = 1 Query: 10 QVAGAKEINSGGVGLVFLCDVAPGFFVKLSAPYWFHLVPHSTRVIACGVLMVCAFSLVGCGTTLGAQLAGVSLSSTQSALGETTFLSLAARYDSRWALTMWSSGTGFAGVFGYVTYVFCH 369 +AGA EI + VGLV+L + P VKLSAPYWFHLV +STR LM C+F +VGC ++ QL GV L + Q LGE + L L + Y ++ +LT WSSGTGFAG+ GY H Sbjct: 47 MIAGANEIAASAVGLVYLFAIGPTIIVKLSAPYWFHLVGYSTRFWVAAALMSCSFIIVGCSKSMTKQLLGVGLVAIQGGLGEASALGLCSLYPNQLSLTAWSSGTGFAGIAGYAWVAVLH 166
BLAST of jgi.p|Trimin1|173668 vs. uniprot
Match: A0A7S0WK83_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WK83_9CHLO) HSP 1 Score: 109 bits (273), Expect = 1.390e-27 Identity = 58/119 (48.74%), Postives = 78/119 (65.55%), Query Frame = 1 Query: 10 QVAGAKEINSGGVGLVFLCDVAPGFFVKLSAPYWFHLVPHSTRVIACGVLMVCAFSLVGCGTTLGA-------QLAGVSLSSTQSALGETTFLSLAARYDSRWALTMWSSGTGFAGVFG 345 +AGAK+I+SGGV LV++ + PG VK++ P W+HLV + R A V MV +FS V G+ L + QL GV+ S QS LGE++ L+L+ Y + A+TMWSSGTGFAGVFG Sbjct: 68 MIAGAKDISSGGVALVYIASIFPGLAVKMTGPCWYHLVSYRLRAYAVAVAMVASFSCVAMGSVLRSPELKLPVQLLGVAFCSFQSGLGESSTLALSVHYSPQRAITMWSSGTGFAGVFG 186 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|173668 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_12737 ID=mRNA_12737|Name=jgi.p|Trimin1|173668|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=411bp|location=Sequence derived from alignment at Contig_105:253257..255243- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGTGTACGCAGGTGGCGGGGGCCAAGGAGATCAACTCGGGGGGGGTGGGback to top protein sequence of jgi.p|Trimin1|173668 >Trimin1|173668|e_gw1.105.6.1 ID=Trimin1|173668|e_gw1.105.6.1|Name=jgi.p|Trimin1|173668|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=137bp MCTQVAGAKEINSGGVGLVFLCDVAPGFFVKLSAPYWFHLVPHSTRVIACback to top mRNA from alignment at Contig_105:253257..255243- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_12737 ID=mRNA_12737|Name=jgi.p|Trimin1|173668|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1987bp|location=Sequence derived from alignment at Contig_105:253257..255243- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_105:253257..255243- >mRNA_12737 ID=mRNA_12737|Name=jgi.p|Trimin1|173668|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=411bp|location=Sequence derived from alignment at Contig_105:253257..255243- (Tribonema minus UTEX_B_3156 )back to top |