mRNA_12696 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|350531 vs. uniprot
Match: A0A835YQP8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQP8_9STRA) HSP 1 Score: 1941 bits (5029), Expect = 0.000e+0 Identity = 1318/1318 (100.00%), Postives = 1318/1318 (100.00%), Query Frame = 2
Query: 71 MLRLSWKKTRRSSRSRDVQASRGVRSTTLALGLLLAAQHLSPTVGLLYSPALAVRSCQGVVTWLGCTAHATNAGAPHQQGAELQQATVSGPAAGAXXXXXXXXXXXXXXXXXXXXXXXXASGALQQGCVRDSLRNRRVAATAGRAVKRGASLRLAVGADRWAGTGGAARAVRRGGGGGQAVAPAVAEQWDAPQPQPAPTCATAPFARCGSDAASASRDCATRGRAAKRRCIDAHAHRGHDSDDGETAVYAHRPWRKQRXXXXXXXXXXXXXXXXXXXXXEMRADDAAAVPRAPEAVRLPSQKAIVEQLTALSDAVPMITDAQCVRVQKDGGLSACPCLPLRRIRSGVGASLCGAAASARLNACGLPLPWQSLAPKSPPCDSSARTPSSRDARRAATVLSDAIAAGVPPNAAMYNAAITVAARASXXXXXXXXXXARRLPAAHALLRDMRQRGLEPTLITYNAMLDAAAXXXXXXXXXXXXXXXXXXXXXXLHTDDTTPSRCTPAPDAADALHLLADMQERRLRPDNISYATAIAACGNDGMTEDALRLLDEAHTAGLAPGTYAHNAATDALIRAERWQEALLLQEHMPTITAPVLHCAHVVVGDACAARSRQCHLPKRQQTRHNRCCIRWEDALLLQERMTQRKVPWDAATWSLRVLALHSSGDHAAVLGVLNEMEERSVXXXXXXXXXXXXXXXXXXXXXXXXXXECTTXXXXXXXXXXXXXXXXXXXXXXXXXESRGAPRVLGXXXXXXXXXXXXXXXEVPMWSLRALALAXXXXXXXXXXXXXXXXXEGMMLNSRGYGAAVSSCRHAGDWRRALSLLERRRRXXXXXXXXTYAQAARAATGGACCRCWSRAGSQARRHXXXXXXXXXXXXXLELLLLALIATRLAARALSLAADGHGALLIIPCSRYPPALTLPGDWRRALSLLERRRLAGAATSAATYAQAVHAVCAAGELDRGLGLLNEMRKAHMRARADPMERREVPGVRSADRRRTRSQAQALSTKLAKKLRDRLRKLEAEAESTPLREMFTPLLAAAGAAGQWEVACSLLRRVEAESGRAPRKEHYLCVMEEHCLCATEAARKWGXXXXXXXXXXXXXXXXXXXXTVACYECAVRACGAARQFHAVTELLQASAAAAEHLGKAAAVPPAVLQAALQAFIAGEQPQHSMAQGLAARLSVHCAAHTRRKQRSATICAAASITPLAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALSRFVRPSPSAFAAVVKALVREERLQCAAQLVDAARAAPWWRLRGDVVLQALPPAATAAARGDAEEELQVEGVTPAR 4024
MLRLSWKKTRRSSRSRDVQASRGVRSTTLALGLLLAAQHLSPTVGLLYSPALAVRSCQGVVTWLGCTAHATNAGAPHQQGAELQQATVSGPAAGAXXXXXXXXXXXXXXXXXXXXXXXXASGALQQGCVRDSLRNRRVAATAGRAVKRGASLRLAVGADRWAGTGGAARAVRRGGGGGQAVAPAVAEQWDAPQPQPAPTCATAPFARCGSDAASASRDCATRGRAAKRRCIDAHAHRGHDSDDGETAVYAHRPWRKQRXXXXXXXXXXXXXXXXXXXXXEMRADDAAAVPRAPEAVRLPSQKAIVEQLTALSDAVPMITDAQCVRVQKDGGLSACPCLPLRRIRSGVGASLCGAAASARLNACGLPLPWQSLAPKSPPCDSSARTPSSRDARRAATVLSDAIAAGVPPNAAMYNAAITVAARASXXXXXXXXXXARRLPAAHALLRDMRQRGLEPTLITYNAMLDAAAXXXXXXXXXXXXXXXXXXXXXXLHTDDTTPSRCTPAPDAADALHLLADMQERRLRPDNISYATAIAACGNDGMTEDALRLLDEAHTAGLAPGTYAHNAATDALIRAERWQEALLLQEHMPTITAPVLHCAHVVVGDACAARSRQCHLPKRQQTRHNRCCIRWEDALLLQERMTQRKVPWDAATWSLRVLALHSSGDHAAVLGVLNEMEERSVXXXXXXXXXXXXXXXXXXXXXXXXXXECTTXXXXXXXXXXXXXXXXXXXXXXXXXESRGAPRVLGXXXXXXXXXXXXXXXEVPMWSLRALALAXXXXXXXXXXXXXXXXXEGMMLNSRGYGAAVSSCRHAGDWRRALSLLERRRRXXXXXXXXTYAQAARAATGGACCRCWSRAGSQARRHXXXXXXXXXXXXXLELLLLALIATRLAARALSLAADGHGALLIIPCSRYPPALTLPGDWRRALSLLERRRLAGAATSAATYAQAVHAVCAAGELDRGLGLLNEMRKAHMRARADPMERREVPGVRSADRRRTRSQAQALSTKLAKKLRDRLRKLEAEAESTPLREMFTPLLAAAGAAGQWEVACSLLRRVEAESGRAPRKEHYLCVMEEHCLCATEAARKWGXXXXXXXXXXXXXXXXXXXXTVACYECAVRACGAARQFHAVTELLQASAAAAEHLGKAAAVPPAVLQAALQAFIAGEQPQHSMAQGLAARLSVHCAAHTRRKQRSATICAAASITPLAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALSRFVRPSPSAFAAVVKALVREERLQCAAQLVDAARAAPWWRLRGDVVLQALPPAATAAARGDAEEELQVEGVTPAR
Sbjct: 1 MLRLSWKKTRRSSRSRDVQASRGVRSTTLALGLLLAAQHLSPTVGLLYSPALAVRSCQGVVTWLGCTAHATNAGAPHQQGAELQQATVSGPAAGAXXXXXXXXXXXXXXXXXXXXXXXXASGALQQGCVRDSLRNRRVAATAGRAVKRGASLRLAVGADRWAGTGGAARAVRRGGGGGQAVAPAVAEQWDAPQPQPAPTCATAPFARCGSDAASASRDCATRGRAAKRRCIDAHAHRGHDSDDGETAVYAHRPWRKQRXXXXXXXXXXXXXXXXXXXXXEMRADDAAAVPRAPEAVRLPSQKAIVEQLTALSDAVPMITDAQCVRVQKDGGLSACPCLPLRRIRSGVGASLCGAAASARLNACGLPLPWQSLAPKSPPCDSSARTPSSRDARRAATVLSDAIAAGVPPNAAMYNAAITVAARASXXXXXXXXXXARRLPAAHALLRDMRQRGLEPTLITYNAMLDAAAXXXXXXXXXXXXXXXXXXXXXXLHTDDTTPSRCTPAPDAADALHLLADMQERRLRPDNISYATAIAACGNDGMTEDALRLLDEAHTAGLAPGTYAHNAATDALIRAERWQEALLLQEHMPTITAPVLHCAHVVVGDACAARSRQCHLPKRQQTRHNRCCIRWEDALLLQERMTQRKVPWDAATWSLRVLALHSSGDHAAVLGVLNEMEERSVXXXXXXXXXXXXXXXXXXXXXXXXXXECTTXXXXXXXXXXXXXXXXXXXXXXXXXESRGAPRVLGXXXXXXXXXXXXXXXEVPMWSLRALALAXXXXXXXXXXXXXXXXXEGMMLNSRGYGAAVSSCRHAGDWRRALSLLERRRRXXXXXXXXTYAQAARAATGGACCRCWSRAGSQARRHXXXXXXXXXXXXXLELLLLALIATRLAARALSLAADGHGALLIIPCSRYPPALTLPGDWRRALSLLERRRLAGAATSAATYAQAVHAVCAAGELDRGLGLLNEMRKAHMRARADPMERREVPGVRSADRRRTRSQAQALSTKLAKKLRDRLRKLEAEAESTPLREMFTPLLAAAGAAGQWEVACSLLRRVEAESGRAPRKEHYLCVMEEHCLCATEAARKWGXXXXXXXXXXXXXXXXXXXXTVACYECAVRACGAARQFHAVTELLQASAAAAEHLGKAAAVPPAVLQAALQAFIAGEQPQHSMAQGLAARLSVHCAAHTRRKQRSATICAAASITPLAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALSRFVRPSPSAFAAVVKALVREERLQCAAQLVDAARAAPWWRLRGDVVLQALPPAATAAARGDAEEELQVEGVTPAR 1318 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350531 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_12696 ID=mRNA_12696|Name=jgi.p|Trimin1|350531|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4027bp|location=Sequence derived from alignment at Contig_65:655390..671307- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. AGCGAGCTTGCTGTGGTGATCCACTTTTTAAAGAGCTGCAATAATCTGACback to top protein sequence of jgi.p|Trimin1|350531 >Trimin1|350531|estExt_Genemark1.C_Ctg_650066 ID=Trimin1|350531|estExt_Genemark1.C_Ctg_650066|Name=jgi.p|Trimin1|350531|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=1319bp MLRLSWKKTRRSSRSRDVQASRGVRSTTLALGLLLAAQHLSPTVGLLYSPback to top mRNA from alignment at Contig_65:655390..671307- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_12696 ID=mRNA_12696|Name=jgi.p|Trimin1|350531|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=15918bp|location=Sequence derived from alignment at Contig_65:655390..671307- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_65:655390..671307- >mRNA_12696 ID=mRNA_12696|Name=jgi.p|Trimin1|350531|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=3957bp|location=Sequence derived from alignment at Contig_65:655390..671307- (Tribonema minus UTEX_B_3156 )back to top |