mRNA_12665 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|149423
Unique NamemRNA_12665
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|149423 vs. uniprot
Match: A0A835YVJ7_9STRA (60S ribosomal protein L29 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVJ7_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.620e-28
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 LQQKNHTGRNASAKDHANGIKKAPRFKYNSLKGMDPKFLRNQRYAKKKNPRK 156
            LQQKNHTGRNASAKDHANGIKKAPRFKYNSLKGMDPKFLRNQRYAKKKNPRK
Sbjct:    1 LQQKNHTGRNASAKDHANGIKKAPRFKYNSLKGMDPKFLRNQRYAKKKNPRK 52
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BLAST of jgi.p|Trimin1|149423 vs. uniprot
Match: D8LU40_ECTSI (60S ribosomal protein L29 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU40_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 2.690e-17
Identity = 36/49 (73.47%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 LQQKNHTGRNASAKDHANGIKKAPRFKYNSLKGMDPKFLRNQRYAKKKN 147
            ++QK+HTGRNA+ KDH NGIKKAP  KY S+KGMDPKFLRNQ++AKK N
Sbjct:    2 VKQKHHTGRNATFKDHVNGIKKAPNHKYKSMKGMDPKFLRNQKFAKKYN 50
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BLAST of jgi.p|Trimin1|149423 vs. uniprot
Match: A0A2P6TDJ6_CHLSO (60S ribosomal protein L29 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TDJ6_CHLSO)

HSP 1 Score: 65.1 bits (157), Expect = 6.350e-13
Identity = 33/44 (75.00%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:   10 KNHTGRNASAKDHANGIKKAPRFKYNSLKGMDPKFLRNQRYAKK 141
            KNHT  N SAK H NGIKK  R +Y+S KGMDPKFLRNQRYAKK
Sbjct:    5 KNHTAANQSAKAHKNGIKKPQRQRYSSRKGMDPKFLRNQRYAKK 48
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BLAST of jgi.p|Trimin1|149423 vs. uniprot
Match: A0A7I4A457_PHYPA (60S ribosomal protein L29 n=4 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4A457_PHYPA)

HSP 1 Score: 65.5 bits (158), Expect = 8.050e-13
Identity = 33/46 (71.74%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   10 KNHTGRNASAKDHANGIKKAPRFKYNSLKGMDPKFLRNQRYAKKKN 147
            KNHT  N S K+H NGIKK  + KY S KGMDPKFLRNQRYAKK N
Sbjct:   20 KNHTAHNQSYKNHKNGIKKVKKHKYASRKGMDPKFLRNQRYAKKHN 65
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BLAST of jgi.p|Trimin1|149423 vs. uniprot
Match: A0A2K1JGS4_PHYPA (60S ribosomal protein L29 n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JGS4_PHYPA)

HSP 1 Score: 65.1 bits (157), Expect = 9.600e-13
Identity = 33/46 (71.74%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   10 KNHTGRNASAKDHANGIKKAPRFKYNSLKGMDPKFLRNQRYAKKKN 147
            KNHT  N S K+H NGIKK  + KY S KGMDPKFLRNQRYAKK N
Sbjct:   13 KNHTAHNQSYKNHKNGIKKVKKHKYISRKGMDPKFLRNQRYAKKHN 58
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BLAST of jgi.p|Trimin1|149423 vs. uniprot
Match: A0A5B8MJV1_9CHLO (60S ribosomal protein L29 n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MJV1_9CHLO)

HSP 1 Score: 64.3 bits (155), Expect = 1.280e-12
Identity = 32/46 (69.57%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   10 KNHTGRNASAKDHANGIKKAPRFKYNSLKGMDPKFLRNQRYAKKKN 147
            KNHT  N S K+H NGIKK  + KY+S KGMDPKFLRNQRY KK N
Sbjct:    5 KNHTAHNQSYKNHRNGIKKQKKQKYSSTKGMDPKFLRNQRYCKKHN 50
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BLAST of jgi.p|Trimin1|149423 vs. uniprot
Match: V4LZQ9_EUTSA (60S ribosomal protein L29 n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=V4LZQ9_EUTSA)

HSP 1 Score: 63.9 bits (154), Expect = 2.150e-12
Identity = 32/46 (69.57%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   10 KNHTGRNASAKDHANGIKKAPRFKYNSLKGMDPKFLRNQRYAKKKN 147
            KNHT  N SAK H NGIKK  R ++ S KGMDPKFLRNQRYA+K N
Sbjct:    5 KNHTAHNQSAKAHKNGIKKPRRHRHTSTKGMDPKFLRNQRYARKHN 50
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BLAST of jgi.p|Trimin1|149423 vs. uniprot
Match: A0A067C325_SAPPC (60S ribosomal protein L29 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C325_SAPPC)

HSP 1 Score: 63.5 bits (153), Expect = 2.980e-12
Identity = 30/49 (61.22%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    1 LQQKNHTGRNASAKDHANGIKKAPRFKYNSLKGMDPKFLRNQRYAKKKN 147
            ++QKNHT RN + K H NGI+K  + +Y+S KG+DPKFLRNQR+AKK N
Sbjct:    2 VKQKNHTARNQTVKAHKNGIRKPHKHRYHSTKGLDPKFLRNQRFAKKYN 50
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BLAST of jgi.p|Trimin1|149423 vs. uniprot
Match: U9SIP6_RHIID (60S ribosomal protein L29 n=4 Tax=Glomeraceae TaxID=36751 RepID=U9SIP6_RHIID)

HSP 1 Score: 63.5 bits (153), Expect = 3.370e-12
Identity = 31/45 (68.89%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:   10 KNHTGRNASAKDHANGIKKAPRFKYNSLKGMDPKFLRNQRYAKKK 144
            KNHT  N + K H NGIKK   ++Y SLKG+DPKFLRNQRYAKKK
Sbjct:    5 KNHTNHNQNRKAHRNGIKKPKTYRYPSLKGVDPKFLRNQRYAKKK 49
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BLAST of jgi.p|Trimin1|149423 vs. uniprot
Match: D8TVB8_VOLCA (60S ribosomal protein L29 n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TVB8_VOLCA)

HSP 1 Score: 63.2 bits (152), Expect = 3.680e-12
Identity = 32/46 (69.57%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:   10 KNHTGRNASAKDHANGIKKAPRFKYNSLKGMDPKFLRNQRYAKKKN 147
            KNHT  N + K H NGIKK  + KY S KGMDPKFLRNQRYAKK N
Sbjct:    5 KNHTAHNQNRKAHRNGIKKPQKHKYASRKGMDPKFLRNQRYAKKHN 50
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|149423 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YVJ7_9STRA1.620e-28100.0060S ribosomal protein L29 (Fragment) n=1 Tax=Tribo... [more]
D8LU40_ECTSI2.690e-1773.4760S ribosomal protein L29 n=1 Tax=Ectocarpus silic... [more]
A0A2P6TDJ6_CHLSO6.350e-1375.0060S ribosomal protein L29 n=1 Tax=Chlorella soroki... [more]
A0A7I4A457_PHYPA8.050e-1371.7460S ribosomal protein L29 n=4 Tax=Physcomitrium pa... [more]
A0A2K1JGS4_PHYPA9.600e-1371.7460S ribosomal protein L29 n=2 Tax=Physcomitrium pa... [more]
A0A5B8MJV1_9CHLO1.280e-1269.5760S ribosomal protein L29 n=1 Tax=Chloropicon prim... [more]
V4LZQ9_EUTSA2.150e-1269.5760S ribosomal protein L29 n=1 Tax=Eutrema salsugin... [more]
A0A067C325_SAPPC2.980e-1261.2260S ribosomal protein L29 n=4 Tax=Saprolegniaceae ... [more]
U9SIP6_RHIID3.370e-1268.8960S ribosomal protein L29 n=4 Tax=Glomeraceae TaxI... [more]
D8TVB8_VOLCA3.680e-1269.5760S ribosomal protein L29 n=1 Tax=Volvox carteri f... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_65contigContig_65:252741..253331 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|149423|gw1.65.81.1
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
KEGG ModuleM00177
KEGG Pathwayko03010,map03010
KEGG koko:K02905
DescriptionRibosomal L29e protein family
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsKOG3504@1|root,2SXXS@2759|Eukaryota
Evalue4.4e-18
Seed ortholog2880.D8LU40
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionRibosomal protein L29e
Ec32 orthologEc-16_000110.1
TranscriptId149745
TrackFilteredModels1
ProteinId149423
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149423gene_12665Tribonema minus UTEX_B_3156 geneContig_65 252741..253331 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12665_1exon_12665_1Tribonema minus UTEX_B_3156 exonContig_65 252741..252839 +
exon_12665_2exon_12665_2Tribonema minus UTEX_B_3156 exonContig_65 253275..253331 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12665CDS_12665Tribonema minus UTEX_B_3156 CDSContig_65 252741..252839 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149423Trimin1|149423|gw1.65.81.1Tribonema minus UTEX_B_3156 polypeptideContig_65 252741..253331 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12665 ID=mRNA_12665|Name=jgi.p|Trimin1|149423|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=156bp|location=Sequence derived from alignment at Contig_65:252741..253331+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGCAGCAAAAGAACCACACCGGGCGCAACGCCAGCGCCAAGGACCATGC
CAACGGCATCAAGAAGGCTCCCCGCTTCAAGTACAACTCTCTGAAGGGGA
TGGACCCCAAGTTCCTCAGGAACCAGAGGTACGCCAAGAAGAAGAACCCG
CGCAAG
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protein sequence of jgi.p|Trimin1|149423

>Trimin1|149423|gw1.65.81.1 ID=Trimin1|149423|gw1.65.81.1|Name=jgi.p|Trimin1|149423|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=52bp
LQQKNHTGRNASAKDHANGIKKAPRFKYNSLKGMDPKFLRNQRYAKKKNP
RK
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mRNA from alignment at Contig_65:252741..253331+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12665 ID=mRNA_12665|Name=jgi.p|Trimin1|149423|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=591bp|location=Sequence derived from alignment at Contig_65:252741..253331+ (Tribonema minus UTEX_B_3156 )
CTGCAGCAAAAGAACCACACCGGGCGCAACGCCAGCGCCAAGGACCATGC
CAACGGCATCAAGAAGGCTCCCCGCTTCAAGTACAACTCTCTGAAGGGGG
TGAGTATGTGCCTTCGGTGGTGCGGTGCGCTGTGATGTTTCGCACGCCAT
TGCCCATCCGCCGCTGAGTTAATGCATTGAACGCACGAGGAATGACATGT
TCTTGCTTGCAAGCGTGTCCTTTGGTCCAGATCATGTCGCAATACACTGG
TCGAGTCCGTACCACGCAACTCATCTGCTACTTGACATCGGTCACAAAGC
TCCCACGCAGGGGCTGCACCTCGAGTTTCTGATATCGCTTGGTCTCGAAT
ACAATCCACTTGGATACCGTCACCAAACTCATTTCGATCAATTACATGTG
TACTCTTCAGGCGTGGTTAAGAGTCATACTCCCTTTCCACAGCCAACTTC
AGTAGAACGCACTTGGGCTCACCTCCAGTAGTTCACCTGCACAATCACAT
CACTGCATCCTTGCTTCCCCCGCCGCTGCCGCAGATGGACCCCAAGTTCC
TCAGGAACCAGAGGTACGCCAAGAAGAAGAACCCGCGCAAG
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Coding sequence (CDS) from alignment at Contig_65:252741..253331+

>mRNA_12665 ID=mRNA_12665|Name=jgi.p|Trimin1|149423|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=156bp|location=Sequence derived from alignment at Contig_65:252741..253331+ (Tribonema minus UTEX_B_3156 )
CTGCAGCAAAAGAACCACACCGGGCGCAACGCCAGCGCCAAGGACCATGC
CAACGGCATCAAGAAGGCTCCCCGCTTCAAGTACAACTCTCTGAAGGGGA
TGGACCCCAAGTTCCTCAGGAACCAGAGGTACGCCAAGAAGAAGAACCCG
CGCAAG
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